PDB Short entry for 2IC5 HEADER SIGNALING PROTEIN 12-SEP-06 2IC5 TITLE CRYSTAL STRUCTURE OF HUMAN RAC3 GROWN IN THE PRESENCE OF GPP(NH)P. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P21-RAC3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21 (DE3)R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS GTPASE RAC3, SMALL GTP BINDING PROTEIN, P21 RAC, RAS-RELATED C3 KEYWDS 2 BOTULINUM TOXIN SUBSTRATE 3, SIGNALLING PROTEIN, GPPNHP, STRUCTURAL KEYWDS 3 GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,X.YANG,Y.ZAO,J.ELKINS,C.GILEADI,N.BURGESS,S.COLEBROOK, AUTHOR 2 O.GILEADI,O.FEDOROV,G.BUNKOCZI,M.SUNDSTROM,C.ARROWSMITH,J.WEIGELT, AUTHOR 3 A.EDWARDS,F.VON DELFT,D.DOYLE,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 2IC5 1 REMARK REVDAT 5 20-OCT-21 2IC5 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2IC5 1 REMARK REVDAT 3 13-JUL-11 2IC5 1 VERSN REVDAT 2 24-FEB-09 2IC5 1 VERSN REVDAT 1 10-OCT-06 2IC5 0 JRNL AUTH X.YANG,E.UGOCHUKWU,J.ELKINS,D.DOYLE JRNL TITL CRYSTAL STRUCTURE OF HUMAN RAC3 GROWN IN THE PRESENCE OF JRNL TITL 2 GPP(NH)P. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 28080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1826 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 278 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : 1.28000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2889 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1909 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3957 ; 1.469 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4671 ; 0.935 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 360 ; 5.300 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;36.304 ;23.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;11.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 455 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3162 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 564 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 551 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2040 ; 0.198 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1427 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1407 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 209 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.046 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1925 ; 3.688 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 714 ; 1.362 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2903 ; 4.592 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1236 ; 6.757 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1050 ; 8.427 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 28 5 REMARK 3 1 B 1 B 28 5 REMARK 3 2 A 39 A 178 5 REMARK 3 2 B 39 B 178 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 979 ; 0.21 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 1132 ; 0.61 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 979 ; 1.04 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1132 ; 2.28 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): -16.1019 15.1225 -7.4690 REMARK 3 T TENSOR REMARK 3 T11: -0.0989 T22: -0.1127 REMARK 3 T33: -0.0600 T12: -0.0010 REMARK 3 T13: 0.0085 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.0219 L22: 0.9705 REMARK 3 L33: 1.3765 L12: -0.0170 REMARK 3 L13: 0.1645 L23: -0.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: 0.0950 S13: 0.0146 REMARK 3 S21: -0.0497 S22: 0.0350 S23: 0.0330 REMARK 3 S31: 0.0715 S32: 0.0909 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4442 -13.8672 -12.6727 REMARK 3 T TENSOR REMARK 3 T11: -0.0525 T22: -0.1080 REMARK 3 T33: -0.0893 T12: 0.0467 REMARK 3 T13: 0.0008 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.1765 L22: 1.2792 REMARK 3 L33: 2.0703 L12: 0.1610 REMARK 3 L13: -0.0236 L23: 0.1758 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.1082 S13: -0.0275 REMARK 3 S21: 0.1202 S22: -0.0064 S23: 0.0359 REMARK 3 S31: 0.2655 S32: 0.2537 S33: -0.0014 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IC5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29632 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SAME SPACE GROUP AS 2G0N REMARK 200 STARTING MODEL: 2G0N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, 20% MPEG 5K , PH 6.5, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.87750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.19050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.79150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.19050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.87750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.79150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 35 REMARK 465 VAL A 36 REMARK 465 GLY A 179 REMARK 465 SER B 0 REMARK 465 GLY B 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CD OE1 OE2 REMARK 470 TYR A 32 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 49 CD CE NZ REMARK 470 ARG A 130 CZ NH1 NH2 REMARK 470 LYS A 132 CD CE NZ REMARK 470 LYS A 133 CD CE NZ REMARK 470 LYS A 153 CE NZ REMARK 470 LYS A 166 CD CE NZ REMARK 470 GLU B 31 CD OE1 OE2 REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 GLN B 74 CG CD OE1 NE2 REMARK 470 LYS B 123 NZ REMARK 470 ASP B 124 CG OD1 OD2 REMARK 470 LYS B 132 CD CE NZ REMARK 470 LYS B 133 CE NZ REMARK 470 ARG B 174 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 96 -58.96 -128.41 REMARK 500 LYS B 96 -59.85 -128.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 GNP A 501 O2B 94.4 REMARK 620 3 GNP A 501 O1G 173.7 90.7 REMARK 620 4 HOH A 602 O 88.4 96.6 87.3 REMARK 620 5 HOH A 603 O 88.4 87.3 95.6 175.1 REMARK 620 6 HOH A 674 O 85.6 170.6 89.9 92.8 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 GDP B 502 O1B 90.7 REMARK 620 3 HOH B 503 O 82.4 91.6 REMARK 620 4 HOH B 504 O 85.7 174.0 92.6 REMARK 620 5 HOH B 505 O 168.7 95.2 87.8 89.2 REMARK 620 6 HOH B 506 O 92.7 89.3 175.0 86.2 97.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2G0N RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE HUMAN RAC3 IN COMPLEX WITH GDP AND REMARK 900 CHLORIDE DBREF 2IC5 A 1 178 UNP P60763 RAC3_HUMAN 1 178 DBREF 2IC5 B 1 178 UNP P60763 RAC3_HUMAN 1 178 SEQADV 2IC5 SER A 0 UNP P60763 CLONING ARTIFACT SEQADV 2IC5 GLY A 178 UNP P60763 CYS 178 ENGINEERED MUTATION SEQADV 2IC5 GLY A 179 UNP P60763 CLONING ARTIFACT SEQADV 2IC5 SER B 0 UNP P60763 CLONING ARTIFACT SEQADV 2IC5 GLY B 178 UNP P60763 CYS 178 ENGINEERED MUTATION SEQADV 2IC5 GLY B 179 UNP P60763 CLONING ARTIFACT SEQRES 1 A 180 SER MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 2 A 180 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 3 A 180 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 4 A 180 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 5 A 180 ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 6 A 180 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 7 A 180 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 8 A 180 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 9 A 180 HIS CYS PRO HIS THR PRO ILE LEU LEU VAL GLY THR LYS SEQRES 10 A 180 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU ARG LEU SEQRES 11 A 180 ARG ASP LYS LYS LEU ALA PRO ILE THR TYR PRO GLN GLY SEQRES 12 A 180 LEU ALA MET ALA ARG GLU ILE GLY SER VAL LYS TYR LEU SEQRES 13 A 180 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 14 A 180 PHE ASP GLU ALA ILE ARG ALA VAL LEU GLY GLY SEQRES 1 B 180 SER MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY SEQRES 2 B 180 ALA VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR SEQRES 3 B 180 ASN ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP SEQRES 4 B 180 ASN TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL SEQRES 5 B 180 ASN LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR SEQRES 6 B 180 ASP ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL SEQRES 7 B 180 PHE LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE SEQRES 8 B 180 GLU ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS SEQRES 9 B 180 HIS CYS PRO HIS THR PRO ILE LEU LEU VAL GLY THR LYS SEQRES 10 B 180 LEU ASP LEU ARG ASP ASP LYS ASP THR ILE GLU ARG LEU SEQRES 11 B 180 ARG ASP LYS LYS LEU ALA PRO ILE THR TYR PRO GLN GLY SEQRES 12 B 180 LEU ALA MET ALA ARG GLU ILE GLY SER VAL LYS TYR LEU SEQRES 13 B 180 GLU CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL SEQRES 14 B 180 PHE ASP GLU ALA ILE ARG ALA VAL LEU GLY GLY HET MG A 302 1 HET CL A 402 1 HET GNP A 501 32 HET BTB A 601 14 HET MG B 301 1 HET CL B 401 1 HET GDP B 502 28 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN BTB BIS-TRIS BUFFER FORMUL 3 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 5 GNP C10 H17 N6 O13 P3 FORMUL 6 BTB C8 H19 N O5 FORMUL 9 GDP C10 H15 N5 O11 P2 FORMUL 10 HOH *278(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 GLN A 61 ASP A 65 5 5 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 LYS A 116 ARG A 120 5 5 HELIX 7 7 ASP A 122 ASP A 131 1 10 HELIX 8 8 THR A 138 ILE A 149 1 12 HELIX 9 9 GLY A 164 GLY A 178 1 15 HELIX 10 10 GLY B 15 ASN B 26 1 12 HELIX 11 11 GLN B 61 ASP B 65 5 5 HELIX 12 12 LEU B 67 TYR B 72 5 6 HELIX 13 13 SER B 86 LYS B 96 1 11 HELIX 14 14 LYS B 96 CYS B 105 1 10 HELIX 15 15 LYS B 116 ARG B 120 5 5 HELIX 16 16 ASP B 122 LYS B 132 1 11 HELIX 17 17 THR B 138 GLY B 150 1 13 HELIX 18 18 GLY B 164 GLY B 178 1 15 SHEET 1 A 6 ASN A 39 VAL A 46 0 SHEET 2 A 6 LYS A 49 TRP A 56 -1 O LEU A 55 N TYR A 40 SHEET 3 A 6 GLN A 2 GLY A 10 1 N CYS A 6 O TRP A 56 SHEET 4 A 6 VAL A 77 SER A 83 1 O CYS A 81 N VAL A 9 SHEET 5 A 6 ILE A 110 THR A 115 1 O VAL A 113 N ILE A 80 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LEU A 155 N GLY A 114 SHEET 1 B 6 ASN B 39 VAL B 46 0 SHEET 2 B 6 LYS B 49 TRP B 56 -1 O LEU B 55 N TYR B 40 SHEET 3 B 6 GLN B 2 GLY B 10 1 N CYS B 6 O GLY B 54 SHEET 4 B 6 VAL B 77 SER B 83 1 O LEU B 79 N VAL B 9 SHEET 5 B 6 ILE B 110 THR B 115 1 O THR B 115 N PHE B 82 SHEET 6 B 6 LYS B 153 GLU B 156 1 O LEU B 155 N GLY B 114 LINK OG1 THR A 17 MG MG A 302 1555 1555 2.05 LINK MG MG A 302 O2B GNP A 501 1555 1555 2.00 LINK MG MG A 302 O1G GNP A 501 1555 1555 2.12 LINK MG MG A 302 O HOH A 602 1555 1555 2.11 LINK MG MG A 302 O HOH A 603 1555 1555 1.95 LINK MG MG A 302 O HOH A 674 1555 1555 2.14 LINK OG1 THR B 17 MG MG B 301 1555 1555 2.11 LINK MG MG B 301 O1B GDP B 502 1555 1555 2.03 LINK MG MG B 301 O HOH B 503 1555 1555 2.06 LINK MG MG B 301 O HOH B 504 1555 1555 2.31 LINK MG MG B 301 O HOH B 505 1555 1555 2.03 LINK MG MG B 301 O HOH B 506 1555 1555 2.14 SITE 1 AC1 6 THR B 17 GDP B 502 HOH B 503 HOH B 504 SITE 2 AC1 6 HOH B 505 HOH B 506 SITE 1 AC2 5 THR A 17 GNP A 501 HOH A 602 HOH A 603 SITE 2 AC2 5 HOH A 674 SITE 1 AC3 6 GLY B 12 LYS B 16 GLY B 60 GLN B 61 SITE 2 AC3 6 GDP B 502 HOH B 505 SITE 1 AC4 1 SER A 151 SITE 1 AC5 27 GLY A 12 ALA A 13 VAL A 14 GLY A 15 SITE 2 AC5 27 LYS A 16 THR A 17 CYS A 18 PHE A 28 SITE 3 AC5 27 ILE A 33 GLY A 60 GLN A 61 LYS A 116 SITE 4 AC5 27 ASP A 118 LEU A 119 SER A 158 ALA A 159 SITE 5 AC5 27 LEU A 160 MG A 302 HOH A 602 HOH A 603 SITE 6 AC5 27 HOH A 614 HOH A 639 HOH A 656 HOH A 674 SITE 7 AC5 27 HOH A 696 HOH A 699 TYR B 64 SITE 1 AC6 24 TYR A 64 ALA B 13 VAL B 14 GLY B 15 SITE 2 AC6 24 LYS B 16 THR B 17 CYS B 18 PHE B 28 SITE 3 AC6 24 ILE B 33 LYS B 116 ASP B 118 LEU B 119 SITE 4 AC6 24 SER B 158 ALA B 159 LEU B 160 MG B 301 SITE 5 AC6 24 CL B 401 HOH B 503 HOH B 505 HOH B 506 SITE 6 AC6 24 HOH B 511 HOH B 535 HOH B 569 HOH B 617 SITE 1 AC7 13 TYR A 23 THR A 24 ASN A 26 ALA A 42 SITE 2 AC7 13 ASN A 43 LYS A 166 HOH A 642 HOH A 686 SITE 3 AC7 13 THR B 24 THR B 25 ASN B 26 HOH B 516 SITE 4 AC7 13 HOH B 531 CRYST1 53.755 81.583 84.381 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012257 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011851 0.00000