PDB Short entry for 2IEF HEADER DNA BINDING PROTEIN/DNA 18-SEP-06 2IEF TITLE STRUCTURE OF THE COOPERATIVE EXCISIONASE (XIS)-DNA COMPLEX REVEALS A TITLE 2 MICRONUCLEOPROTEIN FILAMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: 15-MER DNA; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FIRST STRAND, 5'-END; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 19-MER DNA; COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: FIRST STRAND, 3'-END; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 34-MER DNA; COMPND 13 CHAIN: F; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: SECOND STRAND; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: EXCISIONASE; COMPND 18 CHAIN: A, B, C; COMPND 19 SYNONYM: XIS; COMPND 20 ENGINEERED: YES; COMPND 21 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 4; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE LAMBDA; SOURCE 9 ORGANISM_TAXID: 10710; SOURCE 10 GENE: XIS; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PSBET KEYWDS EXCISIONASE; RECOMBINATION DIRECTIONALITY FACTOR; SITE SPECIFIC KEYWDS 2 RECOMBINATION; MICRONUCLEOPROTEIN FILAMENT, DNA BINDING PROTEIN-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.A.ABBANI,C.V.PAPAGIANNIS,M.D.SAM,D.CASCIO,R.C.JOHNSON,R.T.CLUBB REVDAT 6 21-FEB-24 2IEF 1 REMARK REVDAT 5 20-OCT-21 2IEF 1 SEQADV REVDAT 4 13-JUL-11 2IEF 1 VERSN REVDAT 3 24-FEB-09 2IEF 1 VERSN REVDAT 2 13-MAR-07 2IEF 1 JRNL REVDAT 1 06-FEB-07 2IEF 0 JRNL AUTH M.A.ABBANI,C.V.PAPAGIANNIS,M.D.SAM,D.CASCIO,R.C.JOHNSON, JRNL AUTH 2 R.T.CLUBB JRNL TITL STRUCTURE OF THE COOPERATIVE XIS-DNA COMPLEX REVEALS A JRNL TITL 2 MICRONUCLEOPROTEIN FILAMENT THAT REGULATES PHAGE LAMBDA JRNL TITL 3 INTASOME ASSEMBLY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 2109 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17287355 JRNL DOI 10.1073/PNAS.0607820104 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1161 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.4470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1394 REMARK 3 NUCLEIC ACID ATOMS : 1385 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 68.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : -0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.396 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.271 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.676 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2992 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1720 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4335 ; 0.653 ; 2.530 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4176 ; 0.703 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 161 ; 7.928 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;34.226 ;20.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 257 ;19.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;21.558 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 463 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2263 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 353 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 466 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1894 ; 0.254 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1243 ; 0.223 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1263 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 74 ; 0.173 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.173 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1016 ; 1.955 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 316 ; 0.751 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1331 ; 1.788 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2897 ; 2.799 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3003 ; 3.913 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8800 46.9288 9.8377 REMARK 3 T TENSOR REMARK 3 T11: -0.0789 T22: -0.0751 REMARK 3 T33: -0.0345 T12: 0.0761 REMARK 3 T13: -0.0137 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 4.4714 L22: 5.4013 REMARK 3 L33: 3.1191 L12: -0.5390 REMARK 3 L13: -1.8949 L23: -0.0560 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: -0.3925 S13: 0.0578 REMARK 3 S21: 0.3737 S22: 0.1350 S23: -0.3856 REMARK 3 S31: -0.0096 S32: -0.0432 S33: -0.0963 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3712 63.2500 13.0315 REMARK 3 T TENSOR REMARK 3 T11: -0.0599 T22: -0.0514 REMARK 3 T33: -0.0850 T12: 0.0177 REMARK 3 T13: 0.0254 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 6.0323 L22: 4.1177 REMARK 3 L33: 4.8594 L12: -3.3000 REMARK 3 L13: -1.4140 L23: -0.8928 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.0057 S13: 0.2112 REMARK 3 S21: -0.1968 S22: 0.0261 S23: -0.1567 REMARK 3 S31: 0.0184 S32: 0.0213 S33: -0.0520 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 53 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6100 82.8660 23.5850 REMARK 3 T TENSOR REMARK 3 T11: -0.1272 T22: -0.0467 REMARK 3 T33: 0.0055 T12: 0.0080 REMARK 3 T13: -0.0267 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 4.7026 L22: 6.9826 REMARK 3 L33: 3.3746 L12: -1.3137 REMARK 3 L13: 0.4019 L23: -0.9820 REMARK 3 S TENSOR REMARK 3 S11: -0.0513 S12: -0.0292 S13: 0.4578 REMARK 3 S21: -0.0026 S22: -0.1187 S23: 0.1636 REMARK 3 S31: -0.2963 S32: -0.3299 S33: 0.1700 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 15 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5392 78.6459 15.1837 REMARK 3 T TENSOR REMARK 3 T11: -0.1166 T22: 0.0384 REMARK 3 T33: -0.0122 T12: 0.0066 REMARK 3 T13: -0.1531 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 4.8985 L22: 8.5196 REMARK 3 L33: 1.8273 L12: -3.2493 REMARK 3 L13: -0.9411 L23: 1.6572 REMARK 3 S TENSOR REMARK 3 S11: 0.1459 S12: 0.8260 S13: -0.0022 REMARK 3 S21: -0.4825 S22: -0.5570 S23: 0.8780 REMARK 3 S31: -0.1312 S32: -0.4396 S33: 0.4111 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 16 E 34 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3259 37.6576 12.2578 REMARK 3 T TENSOR REMARK 3 T11: 0.0032 T22: -0.0780 REMARK 3 T33: 0.1776 T12: 0.0041 REMARK 3 T13: -0.0016 T23: 0.0967 REMARK 3 L TENSOR REMARK 3 L11: 10.9410 L22: 7.7824 REMARK 3 L33: 0.4626 L12: -8.4287 REMARK 3 L13: 0.4905 L23: 0.1966 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: -0.0484 S13: -1.8666 REMARK 3 S21: 0.3098 S22: -0.0619 S23: 1.1503 REMARK 3 S31: 0.1728 S32: 0.3589 S33: 0.0465 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 35 F 68 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9159 54.2314 13.5996 REMARK 3 T TENSOR REMARK 3 T11: -0.0724 T22: 0.0293 REMARK 3 T33: -0.0757 T12: -0.0314 REMARK 3 T13: -0.0256 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 5.0641 L22: 4.1616 REMARK 3 L33: 0.4493 L12: -3.7001 REMARK 3 L13: -0.6398 L23: 0.9413 REMARK 3 S TENSOR REMARK 3 S11: 0.1420 S12: 0.1977 S13: -0.6832 REMARK 3 S21: -0.0760 S22: -0.3194 S23: 0.7419 REMARK 3 S31: 0.0305 S32: -0.1462 S33: 0.1774 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2IEF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-06. REMARK 100 THE DEPOSITION ID IS D_1000039480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 93.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M AMMONIUM ACETATE REMARK 280 0.1M SODIUM CITRATE, PH 6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.42267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.84533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.84533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.42267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 55 REMARK 465 ARG C 54 REMARK 465 PRO C 55 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 52 CB CG CD1 CD2 REMARK 470 ASN B 53 CB CG OD1 ND2 REMARK 470 ARG B 54 CB CG CD NE CZ NH1 NH2 REMARK 470 ASN C 53 CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT D 2 O3' DT D 2 C3' -0.040 REMARK 500 DG D 10 O3' DG D 10 C3' -0.036 REMARK 500 DT D 12 O3' DT D 12 C3' -0.055 REMARK 500 DA D 15 O3' DA D 15 C3' -0.048 REMARK 500 DT E 22 O3' DT E 22 C3' -0.066 REMARK 500 DT E 22 C5 DT E 22 C7 0.038 REMARK 500 DT E 31 C5 DT E 31 C7 0.038 REMARK 500 DT F 35 C5 DT F 35 C7 0.044 REMARK 500 DA F 37 O3' DA F 37 C3' 0.097 REMARK 500 DC F 38 O3' DC F 38 C3' 0.099 REMARK 500 DA F 39 O3' DA F 39 C3' -0.036 REMARK 500 DA F 41 O3' DA F 41 C3' -0.036 REMARK 500 DT F 43 C5' DT F 43 C4' 0.057 REMARK 500 DG F 54 C5 DG F 54 C6 -0.061 REMARK 500 DA F 57 O3' DA F 57 C3' -0.048 REMARK 500 DC F 65 O3' DC F 65 C3' 0.089 REMARK 500 DA F 68 C5' DA F 68 C4' 0.052 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG E 18 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA F 37 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 67 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 51 -154.87 -154.56 REMARK 500 LEU B 52 126.60 177.43 REMARK 500 ASN B 53 -156.54 -178.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 2IEF A 1 55 UNP P03699 VXIS_LAMBD 1 55 DBREF 2IEF B 1 55 UNP P03699 VXIS_LAMBD 1 55 DBREF 2IEF C 1 55 UNP P03699 VXIS_LAMBD 1 55 DBREF 2IEF D 1 15 PDB 2IEF 2IEF 1 15 DBREF 2IEF E 16 34 PDB 2IEF 2IEF 16 34 DBREF 2IEF F 35 68 PDB 2IEF 2IEF 35 68 SEQADV 2IEF SER A 28 UNP P03699 CYS 28 ENGINEERED MUTATION SEQADV 2IEF SER B 28 UNP P03699 CYS 28 ENGINEERED MUTATION SEQADV 2IEF SER C 28 UNP P03699 CYS 28 ENGINEERED MUTATION SEQRES 1 D 15 DA DT DA DT DG DT DT DG DT DG DT DT DT SEQRES 2 D 15 DT DA SEQRES 1 E 19 DC DA DG DT DA DT DT DA DT DG DT DA DG SEQRES 2 E 19 DT DC DT DG DT DT SEQRES 1 F 34 DT DA DA DC DA DG DA DC DT DA DC DA DT SEQRES 2 F 34 DA DA DT DA DC DT DG DT DA DA DA DA DC SEQRES 3 F 34 DA DC DA DA DC DA DT DA SEQRES 1 A 55 MET TYR LEU THR LEU GLN GLU TRP ASN ALA ARG GLN ARG SEQRES 2 A 55 ARG PRO ARG SER LEU GLU THR VAL ARG ARG TRP VAL ARG SEQRES 3 A 55 GLU SER ARG ILE PHE PRO PRO PRO VAL LYS ASP GLY ARG SEQRES 4 A 55 GLU TYR LEU PHE HIS GLU SER ALA VAL LYS VAL ASP LEU SEQRES 5 A 55 ASN ARG PRO SEQRES 1 B 55 MET TYR LEU THR LEU GLN GLU TRP ASN ALA ARG GLN ARG SEQRES 2 B 55 ARG PRO ARG SER LEU GLU THR VAL ARG ARG TRP VAL ARG SEQRES 3 B 55 GLU SER ARG ILE PHE PRO PRO PRO VAL LYS ASP GLY ARG SEQRES 4 B 55 GLU TYR LEU PHE HIS GLU SER ALA VAL LYS VAL ASP LEU SEQRES 5 B 55 ASN ARG PRO SEQRES 1 C 55 MET TYR LEU THR LEU GLN GLU TRP ASN ALA ARG GLN ARG SEQRES 2 C 55 ARG PRO ARG SER LEU GLU THR VAL ARG ARG TRP VAL ARG SEQRES 3 C 55 GLU SER ARG ILE PHE PRO PRO PRO VAL LYS ASP GLY ARG SEQRES 4 C 55 GLU TYR LEU PHE HIS GLU SER ALA VAL LYS VAL ASP LEU SEQRES 5 C 55 ASN ARG PRO FORMUL 7 HOH *39(H2 O) HELIX 1 1 LEU A 5 GLN A 12 1 8 HELIX 2 2 SER A 17 GLU A 27 1 11 HELIX 3 3 LEU B 5 ARG B 11 1 7 HELIX 4 4 SER B 17 GLU B 27 1 11 HELIX 5 5 LEU C 5 ALA C 10 1 6 HELIX 6 6 SER C 17 GLU C 27 1 11 SHEET 1 A 3 LEU A 3 THR A 4 0 SHEET 2 A 3 GLU A 40 PHE A 43 -1 O PHE A 43 N LEU A 3 SHEET 3 A 3 VAL A 35 ASP A 37 -1 N ASP A 37 O GLU A 40 SHEET 1 B 2 ILE A 30 PHE A 31 0 SHEET 2 B 2 VAL A 48 LYS A 49 -1 O VAL A 48 N PHE A 31 SHEET 1 C 3 TYR B 2 THR B 4 0 SHEET 2 C 3 GLU B 40 HIS B 44 -1 O PHE B 43 N LEU B 3 SHEET 3 C 3 VAL B 35 ASP B 37 -1 N VAL B 35 O LEU B 42 SHEET 1 D 2 ILE B 30 PHE B 31 0 SHEET 2 D 2 VAL B 48 LYS B 49 -1 O VAL B 48 N PHE B 31 SHEET 1 E 3 TYR C 2 THR C 4 0 SHEET 2 E 3 GLU C 40 HIS C 44 -1 O PHE C 43 N LEU C 3 SHEET 3 E 3 VAL C 35 ASP C 37 -1 N ASP C 37 O GLU C 40 SHEET 1 F 2 ILE C 30 PHE C 31 0 SHEET 2 F 2 VAL C 48 LYS C 49 -1 O VAL C 48 N PHE C 31 CISPEP 1 PHE A 31 PRO A 32 0 -9.10 CISPEP 2 PHE B 31 PRO B 32 0 -6.88 CISPEP 3 PHE C 31 PRO C 32 0 -11.76 CRYST1 111.655 111.655 76.268 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008956 0.005171 0.000000 0.00000 SCALE2 0.000000 0.010342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013112 0.00000