PDB Short entry for 2IIJ HEADER CHAPERONE 28-SEP-06 2IIJ TITLE STRUCTURE OF HUMAN ASF1A IN COMPLEX WITH HISTONE H3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASF1A PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H3; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: RESIDUES 122-135; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASF1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM30; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD (DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PETM30 KEYWDS PROTEIN-PROTEIN COMPLEX, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.AGEZ,R.GUEROIS,C.VAN HEIJENOORT,C.MANN,F.OCHSENBEIN REVDAT 4 09-MAR-22 2IIJ 1 REMARK SEQADV REVDAT 3 24-FEB-09 2IIJ 1 VERSN REVDAT 2 20-FEB-07 2IIJ 1 JRNL REVDAT 1 13-FEB-07 2IIJ 0 JRNL AUTH M.AGEZ,J.CHEN,R.GUEROIS,C.VAN HEIJENOORT,J.Y.THURET,C.MANN, JRNL AUTH 2 F.OCHSENBEIN JRNL TITL STRUCTURE OF THE HISTONE CHAPERONE ASF1 BOUND TO THE HISTONE JRNL TITL 2 H3 C-TERMINAL HELIX AND FUNCTIONAL INSIGHTS. JRNL REF STRUCTURE V. 15 191 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17292837 JRNL DOI 10.1016/J.STR.2007.01.002 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.5, ARIA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), M. NILGES, INSTITUT PASTEUR, REMARK 3 FRANCE (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 5185 RESTRAINTS, 4945 ARE REMARK 3 NOE-DERIVED REMARK 3 DISTANCE CONSTRAINTS, 170 DIHEDRAL ANGLE RESTRAINTS, 70 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 2IIJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000039613. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2 MM ASF1 (1-156) U-15N/13C/ 2.5 REMARK 210 MM HISTONE H3 (122-135) TRIS D11 REMARK 210 20 MM, NAN3 0.1%, EDTA 1 MM, DSS REMARK 210 0.1 MM PH 7.4, 90% H2O, 10% D2O; REMARK 210 2 MM ASF1 (1-156) U-15N/13C/ 2.5 REMARK 210 MM HISTONE H3 (122-135) TRIS D11 REMARK 210 20 MM, NAN3 0.1%, EDTA 1 MM, DSS REMARK 210 0.1 MM PH 7.4, 100% D2O; 2 MM REMARK 210 ASF1 (1-156) U-15N/ 2.5 MM REMARK 210 HISTONE H3 (122-135) TRIS D11 20 REMARK 210 MM, NAN3 0.1%, EDTA 1 MM, DSS REMARK 210 0.1 MM PH 7.4, 90% H2O, 10% D2O; REMARK 210 2.5 MM ASF1 (1-156) / 2 MM REMARK 210 HISTONE H3 (122-135)U-15N/13C REMARK 210 TRIS D11 20 MM, NAN3 0.1%, EDTA REMARK 210 1 MM, DSS 0.1 MM PH 7.4, 90% H2O, REMARK 210 10% D2O; 2.5 MM ASF1 (1-156) / REMARK 210 2 MM HISTONE H3 (122-135)U-15N/ REMARK 210 13C TRIS D11 20 MM, NAN3 0.1%, REMARK 210 EDTA 1 MM, DSS 0.1 MM PH 7.4, REMARK 210 100% D2O; 2.5 MM ASF1 (1-156) / REMARK 210 2 MM HISTONE H3 (122-135)U-15N REMARK 210 TRIS D11 20 MM, NAN3 0.1%, EDTA REMARK 210 1 MM, DSS 0.1 MM PH 7.4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_12C14N_FILTERED_13CSEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.111, ARIA 2.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 TYR A 111 HA ALA A 141 1.15 REMARK 500 HA ARG B 129 HB3 GLU B 133 1.20 REMARK 500 HB3 LEU A 34 HA PRO A 64 1.26 REMARK 500 HD11 LEU A 38 HZ PHE A 106 1.32 REMARK 500 OD2 ASP A 86 HZ2 LYS A 129 1.55 REMARK 500 OD2 ASP A 13 HH21 ARG A 137 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 15 101.99 -50.32 REMARK 500 1 PRO A 17 137.47 -38.31 REMARK 500 1 GLU A 36 -165.84 -113.33 REMARK 500 1 VAL A 45 105.87 -54.73 REMARK 500 1 ALA A 67 -171.77 50.29 REMARK 500 1 VAL A 90 46.17 -101.19 REMARK 500 1 TYR A 117 151.93 -47.97 REMARK 500 1 ASN A 125 89.11 -152.72 REMARK 500 1 LEU A 140 92.57 -62.20 REMARK 500 1 ASP A 155 71.19 -114.32 REMARK 500 2 ASN A 7 -65.65 -107.39 REMARK 500 2 ASP A 13 43.66 -69.69 REMARK 500 2 PRO A 15 100.97 -53.02 REMARK 500 2 PRO A 17 141.46 -39.83 REMARK 500 2 GLU A 36 -167.37 -117.13 REMARK 500 2 ALA A 48 0.23 -66.05 REMARK 500 2 GLU A 51 -3.31 -141.65 REMARK 500 2 ALA A 67 -179.64 48.19 REMARK 500 2 VAL A 90 46.67 -102.39 REMARK 500 2 LYS B 122 -61.85 -148.44 REMARK 500 2 ASP B 123 -93.92 13.18 REMARK 500 2 ARG B 134 -31.20 -135.07 REMARK 500 3 ASP A 13 39.55 -68.88 REMARK 500 3 PRO A 15 101.73 -50.38 REMARK 500 3 PRO A 17 132.65 -38.22 REMARK 500 3 GLU A 36 -167.51 -117.01 REMARK 500 3 VAL A 45 104.46 -53.44 REMARK 500 3 ASP A 77 -175.32 -62.07 REMARK 500 3 VAL A 90 45.43 -100.74 REMARK 500 3 TYR A 117 156.65 -48.80 REMARK 500 3 LEU A 140 91.81 -64.51 REMARK 500 3 MET B 120 -64.14 -105.09 REMARK 500 3 GLU B 133 75.49 -113.84 REMARK 500 3 ARG B 134 -75.74 -53.46 REMARK 500 4 ALA A 2 -62.12 -91.04 REMARK 500 4 ASN A 7 -65.88 -131.16 REMARK 500 4 ASP A 13 44.47 -82.62 REMARK 500 4 PRO A 15 101.01 -51.47 REMARK 500 4 SER A 47 68.04 -115.19 REMARK 500 4 SER A 50 -138.88 -103.01 REMARK 500 4 GLU A 51 3.54 -155.61 REMARK 500 4 ALA A 67 162.27 53.52 REMARK 500 4 ASP A 77 -177.80 -59.26 REMARK 500 4 VAL A 90 46.53 -96.23 REMARK 500 4 TYR A 117 151.91 -46.52 REMARK 500 4 LEU A 140 88.20 -69.20 REMARK 500 4 MET B 120 -66.34 -133.93 REMARK 500 5 ASN A 7 -63.02 -128.14 REMARK 500 5 ASP A 13 83.00 -66.20 REMARK 500 5 PRO A 15 102.04 -49.44 REMARK 500 REMARK 500 THIS ENTRY HAS 267 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 14 PRO A 15 2 -138.13 REMARK 500 ASN A 14 PRO A 15 4 -135.24 REMARK 500 ASN A 14 PRO A 15 6 -149.74 REMARK 500 ASN A 14 PRO A 15 8 108.22 REMARK 500 ASN A 14 PRO A 15 10 -136.67 REMARK 500 ASN A 14 PRO A 15 11 -147.81 REMARK 500 ASN A 14 PRO A 15 13 -125.72 REMARK 500 ASN A 14 PRO A 15 15 -146.87 REMARK 500 ASN A 14 PRO A 15 19 -149.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 137 0.07 SIDE CHAIN REMARK 500 6 ARG A 137 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TEY RELATED DB: PDB REMARK 900 STRUCTURE OF THE FREE PROTEIN HUMAN ASF1A DBREF 2IIJ A 1 156 UNP Q6IA08 Q6IA08_HUMAN 1 156 DBREF 2IIJ B 118 135 PDB 2IIJ 2IIJ 118 135 SEQADV 2IIJ GLY A -1 UNP Q6IA08 CLONING ARTIFACT SEQADV 2IIJ ALA A 0 UNP Q6IA08 CLONING ARTIFACT SEQRES 1 A 158 GLY ALA MET ALA LYS VAL GLN VAL ASN ASN VAL VAL VAL SEQRES 2 A 158 LEU ASP ASN PRO SER PRO PHE TYR ASN PRO PHE GLN PHE SEQRES 3 A 158 GLU ILE THR PHE GLU CYS ILE GLU ASP LEU SER GLU ASP SEQRES 4 A 158 LEU GLU TRP LYS ILE ILE TYR VAL GLY SER ALA GLU SER SEQRES 5 A 158 GLU GLU TYR ASP GLN VAL LEU ASP SER VAL LEU VAL GLY SEQRES 6 A 158 PRO VAL PRO ALA GLY ARG HIS MET PHE VAL PHE GLN ALA SEQRES 7 A 158 ASP ALA PRO ASN PRO GLY LEU ILE PRO ASP ALA ASP ALA SEQRES 8 A 158 VAL GLY VAL THR VAL VAL LEU ILE THR CYS THR TYR ARG SEQRES 9 A 158 GLY GLN GLU PHE ILE ARG VAL GLY TYR TYR VAL ASN ASN SEQRES 10 A 158 GLU TYR THR GLU THR GLU LEU ARG GLU ASN PRO PRO VAL SEQRES 11 A 158 LYS PRO ASP PHE SER LYS LEU GLN ARG ASN ILE LEU ALA SEQRES 12 A 158 SER ASN PRO ARG VAL THR ARG PHE HIS ILE ASN TRP GLU SEQRES 13 A 158 ASP ASN SEQRES 1 B 18 GLY ALA MET GLY LYS ASP ILE GLN LEU ALA ARG ARG ILE SEQRES 2 B 18 ARG GLY GLU ARG ALA HELIX 1 1 SER A 50 ASP A 54 5 5 HELIX 2 2 PRO A 85 VAL A 90 1 6 HELIX 3 3 GLU A 119 ASN A 125 1 7 HELIX 4 4 GLY B 121 GLU B 133 1 13 SHEET 1 A 3 VAL A 4 VAL A 11 0 SHEET 2 A 3 PHE A 22 ASP A 33 -1 O GLU A 29 N GLN A 5 SHEET 3 A 3 PRO A 66 ALA A 76 -1 O PHE A 74 N PHE A 24 SHEET 1 B 6 SER A 16 PRO A 17 0 SHEET 2 B 6 LEU A 135 VAL A 146 -1 O ARG A 137 N SER A 16 SHEET 3 B 6 GLN A 104 TYR A 117 -1 N TYR A 112 O LEU A 140 SHEET 4 B 6 VAL A 92 TYR A 101 -1 N CYS A 99 O PHE A 106 SHEET 5 B 6 LEU A 38 TYR A 44 -1 N GLU A 39 O THR A 100 SHEET 6 B 6 GLN A 55 VAL A 62 -1 O GLN A 55 N TYR A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000