PDB Short entry for 2IPV HEADER MEMBRANE PROTEIN 12-OCT-06 2IPV TITLE HOMOLOGY MODEL OF NR2B SUBUNIT OF NMDA RECEPTOR IN COMPLEX TITLE 2 WITH GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE BINDING SITE OF NR2B SUBUNIT OF NMDA COMPND 3 RECEPTOR; COMPND 4 CHAIN: X SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS THEORETICAL MODEL, NR2B SUBUNIT, NMDA RECEPTOR, GLUTAMATE EXPDTA THEORETICAL MODEL AUTHOR P.A.ABREU,M.G.ALBUQUERQUE,C.R.RODRIGUES,R.PAES-DE-CARVALHO, AUTHOR 2 S.PINHEIRO,H.C.CASTRO REVDAT 1 24-OCT-06 2IPV 0 JRNL AUTH H.FURUKAWA,S.K.SINGH,R.MANCUSSO,E.GOUAUX JRNL TITL SUBUNIT ARRANGEMENT AND FUNCTION IN NMDA RECEPTORS JRNL REF NATURE V. 438 185 2005 JRNL REFN ASTM NATUAS UK ISSN 0028-0836 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NR2B SUBUNIT OF NMDA RECEPTOR REMARK 3 HOMOLOGY MODEL WAS CONSTRUCTED USING SWISS MODEL PROGRAM. THE REMARK 3 CRYSTAL STRUCTURE OF NR2A SUBUNIT (PDB CODE 2A5S) WAS THE REMARK 3 TEMPLATE AND THE MODEL WAS MINIMIZED USING DEEP VIEW'S REMARK 3 INTERNAL MINIMIZER AVAILABLE IN SWISS PDB VIEWER. REMARK 4 REMARK 4 2IPV COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY WAS DEPOSITED AT RCSB ON 12-OCT-2006. REMARK 100 THE RCSB ID CODE IS RCSB039868. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: NR2B SUBUNIT OF NMDA RECEPTOR HOMOLOGY MODEL WAS REMARK 220 CONSTRUCTED USING SWISS MODEL PROGRAM. THE CRYSTAL REMARK 220 STRUCTURE OF NR2A SUBUNIT (PDB CODE 2A5S) WAS THE REMARK 220 TEMPLATE AND THE MODEL WAS MINIMIZED USING DEEP VIEW'S REMARK 220 INTERNAL MINIMIZER AVAILABLE IN SWISS PDB VIEWER. THIS REMARK 220 THEORETICAL MODEL ENTRY WAS NOT ANNOTATED AND NOT REMARK 220 VALIDATED BY THE WWPDB STAFF AND THEREFORE MAY NOT REMARK 220 CONFORM TO THE PDB FORMAT. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A5S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NR2A LIGAND BINDING CORE IN REMARK 900 COMPLEX WITH GLUTAMATE SEQRES 1 X 256 ASP HIS LEU SER ILE VAL THR LEU GLU GLU ALA PRO PHE SEQRES 2 X 256 VAL ILE VAL GLU SER VAL ASP PRO LEU SER GLY THR CYS SEQRES 3 X 256 MET ARG ASN THR VAL PRO CYS GLN LYS ARG ILE VAL THR SEQRES 4 X 256 GLU ASN LYS THR ASP GLU GLU PRO GLY TYR ILE LYS LYS SEQRES 5 X 256 CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU LYS LYS ILE SEQRES 6 X 256 SER LYS SER VAL LYS PHE THR TYR ASP LEU TYR LEU VAL SEQRES 7 X 256 THR ASN GLY LYS HIS GLY LYS LYS ILE ASN GLY THR TRP SEQRES 8 X 256 ASN GLY MET ILE GLY GLU VAL VAL MET LYS ARG ALA TYR SEQRES 9 X 256 MET ALA VAL GLY SER LEU THR ILE ASN GLU GLU ARG SER SEQRES 10 X 256 GLU VAL VAL ASP PHE SER VAL PRO PHE ILE VAL ILE PHE SEQRES 11 X 256 LEU ALA SER TYR THR ALA ASN LEU ALA ALA PHE MET ILE SEQRES 12 X 256 GLN GLU GLU TYR VAL ASP GLN VAL SER GLY LEU SER ASP SEQRES 13 X 256 LYS LYS PHE GLN ARG PRO ASN ASP PHE SER PRO PRO PHE SEQRES 14 X 256 ARG PHE GLY THR VAL PRO ASN GLY SER THR GLU ARG ASN SEQRES 15 X 256 ILE ARG ASN ASN TYR ALA GLU MET HIS ALA TYR MET GLY SEQRES 16 X 256 LYS PHE ASN GLN ARG GLY VAL ASP ASP ALA LEU LEU SER SEQRES 17 X 256 LEU LYS THR GLY LYS LEU ASP ALA PHE ILE TYR ASP ALA SEQRES 18 X 256 ALA VAL LEU ASN TYR MET ALA GLY ARG ASP GLU GLY CYS SEQRES 19 X 256 LYS LEU VAL THR ILE GLY SER GLY LYS VAL PHE ALA SER SEQRES 20 X 256 THR GLY TYR GLY ILE ALA ILE GLN LYS HET GLU X 261 10 HETNAM GLU GLUTAMIC ACID FORMUL 2 GLU C5 H9 N O4 HELIX 1 1 GLY X 60 LYS X 74 1 15 HELIX 2 2 GLY X 97 MET X 104 1 8 HELIX 3 3 ASN X 117 GLU X 122 1 6 HELIX 4 4 ASP X 160 ARG X 165 1 6 HELIX 5 5 PRO X 166 PHE X 169 5 4 HELIX 6 6 GLY X 181 ASN X 189 1 9 HELIX 7 7 TYR X 191 LYS X 200 1 10 HELIX 8 8 GLY X 205 THR X 215 1 11 HELIX 9 9 ALA X 225 ARG X 234 1 10 HELIX 10 10 LYS X 247 SER X 251 5 5 SHEET 1 A 5 TYR X 77 LEU X 81 0 SHEET 2 A 5 LEU X 7 THR X 11 1 N LEU X 7 O ASP X 78 SHEET 3 A 5 MET X 109 ALA X 110 1 O MET X 109 N VAL X 10 SHEET 4 A 5 ALA X 257 GLN X 259 -1 O ALA X 257 N ALA X 110 SHEET 5 A 5 VAL X 124 PHE X 126 -1 N ASP X 125 O ILE X 258 SHEET 1 B 3 ILE X 19 SER X 22 0 SHEET 2 B 3 LYS X 56 LYS X 59 -1 O LYS X 59 N ILE X 19 SHEET 3 B 3 VAL X 35 CYS X 37 -1 N VAL X 35 O CYS X 58 SHEET 1 C 2 LYS X 89 ILE X 91 0 SHEET 2 C 2 THR X 94 ASN X 96 -1 O THR X 94 N ILE X 91 SHEET 1 D 4 PHE X 175 GLY X 176 0 SHEET 2 D 4 ALA X 220 ASP X 224 1 O ILE X 222 N GLY X 176 SHEET 3 D 4 LEU X 142 ILE X 147 -1 N PHE X 145 O PHE X 221 SHEET 4 D 4 LEU X 240 GLY X 244 -1 O ILE X 243 N ALA X 144 SSBOND 1 CYS X 30 CYS X 57 SSBOND 2 CYS X 37 CYS X 58 CISPEP 1 ALA X 15 PRO X 16 0 0.54 CISPEP 2 ASP X 153 GLN X 154 0 18.73 CISPEP 3 SER X 170 PRO X 171 0 -0.28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000