PDB Short entry for 2IUP HEADER OXIDOREDUCTASE 07-JUN-06 2IUP TITLE CRYSTAL STRUCTURE OF DITHIONITE-REDUCED AROMATIC AMINE DEHYDROGENASE TITLE 2 (AADH) FROM ALCALIGENES FAECALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC AMINE DEHYDROGENASE ALPHA SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.4.99.4; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AROMATIC AMINE DEHYDROGENASE BETA SUBUNIT; COMPND 7 CHAIN: D, H; COMPND 8 EC: 1.4.99.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALCALIGENES FAECALIS; SOURCE 3 ORGANISM_TAXID: 511; SOURCE 4 STRAIN: IFO 14479; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: ALCALIGENES FAECALIS; SOURCE 7 ORGANISM_TAXID: 511; SOURCE 8 STRAIN: IFO 14479 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ROUJEINIKOVA,N.SCRUTTON,D.LEYS REVDAT 6 06-FEB-19 2IUP 1 JRNL REMARK REVDAT 5 30-JAN-19 2IUP 1 REMARK REVDAT 4 24-FEB-09 2IUP 1 VERSN REVDAT 3 23-JAN-07 2IUP 1 REMARK MASTER REVDAT 2 02-JAN-07 2IUP 1 JRNL REVDAT 1 20-SEP-06 2IUP 0 JRNL AUTH A.ROUJEINIKOVA,N.S.SCRUTTON,D.LEYS JRNL TITL ATOMIC LEVEL INSIGHT INTO THE OXIDATIVE HALF-REACTION OF JRNL TITL 2 AROMATIC AMINE DEHYDROGENASE. JRNL REF J. BIOL. CHEM. V. 281 40264 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 17005560 JRNL DOI 10.1074/JBC.M605559200 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 86487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4543 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 314 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.179 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7562 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 6573 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10279 ; 1.079 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15339 ; 0.693 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 947 ; 7.598 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;35.537 ;24.080 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1202 ;12.024 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;12.428 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1114 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8557 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1535 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1331 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6723 ; 0.211 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3878 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 898 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 3 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 30 ; 0.273 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 41 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5999 ; 2.439 ; 4.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7620 ; 2.674 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3365 ; 4.238 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2656 ; 5.149 ;12.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IUP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290029016. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91209 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 2000 MME, AMMONIUM SULPHATE, REMARK 280 SODIUM CACODYLATE, PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.53150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 433 REMARK 465 ALA D 48 REMARK 465 GLY D 49 REMARK 465 GLY D 50 REMARK 465 GLY D 51 REMARK 465 GLY D 52 REMARK 465 SER D 53 REMARK 465 SER D 54 REMARK 465 SER D 55 REMARK 465 GLY D 56 REMARK 465 ALA D 57 REMARK 465 ASP D 58 REMARK 465 HIS D 59 REMARK 465 ILE D 60 REMARK 465 SER D 61 REMARK 465 LEU D 62 REMARK 465 ASN D 63 REMARK 465 PRO D 64 REMARK 465 ASP D 65 REMARK 465 LEU D 66 REMARK 465 ALA D 67 REMARK 465 ASN D 68 REMARK 465 GLU D 69 REMARK 465 ASP D 70 REMARK 465 ALA D 180 REMARK 465 LYS D 181 REMARK 465 ASN D 182 REMARK 465 ALA H 48 REMARK 465 GLY H 49 REMARK 465 GLY H 50 REMARK 465 GLY H 51 REMARK 465 GLY H 52 REMARK 465 SER H 53 REMARK 465 SER H 54 REMARK 465 SER H 55 REMARK 465 GLY H 56 REMARK 465 ALA H 57 REMARK 465 ASP H 58 REMARK 465 HIS H 59 REMARK 465 ILE H 60 REMARK 465 ALA H 180 REMARK 465 LYS H 181 REMARK 465 ASN H 182 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 LYS B 271 CG CD CE NZ REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 ASP B 308 CG OD1 OD2 REMARK 470 LYS B 366 CG CD CE NZ REMARK 470 SER H 61 OG REMARK 470 GLU H 69 CG CD OE1 OE2 REMARK 470 ASP H 70 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2370 O HOH H 2059 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 393 CB THR A 393 OG1 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 122 -133.04 52.02 REMARK 500 ILE A 146 -68.15 70.93 REMARK 500 LYS A 174 18.68 -149.78 REMARK 500 SER A 227 160.39 78.63 REMARK 500 ARG A 236 43.18 -143.62 REMARK 500 ASP A 273 62.42 -153.09 REMARK 500 TYR A 328 -83.78 -116.30 REMARK 500 ALA A 421 75.91 -154.46 REMARK 500 ALA B 122 -135.49 50.74 REMARK 500 ILE B 146 -69.76 70.22 REMARK 500 LYS B 174 23.74 -150.38 REMARK 500 VAL B 216 -91.09 -82.23 REMARK 500 SER B 227 159.04 78.97 REMARK 500 ARG B 236 54.80 -146.81 REMARK 500 ASP B 273 60.80 -155.04 REMARK 500 TYR B 328 -85.85 -117.18 REMARK 500 ALA B 421 77.57 -155.88 REMARK 500 GLU D 151 76.76 -119.07 REMARK 500 HIS H 80 30.54 -94.82 REMARK 500 ASN H 141 55.32 -147.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 200 PRO A 201 30.64 REMARK 500 PRO A 310 TRP A 311 149.58 REMARK 500 SER B 200 PRO B 201 37.45 REMARK 500 PRO B 310 TRP B 311 149.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2060 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A2062 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2081 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A2104 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH B2043 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH H2050 DISTANCE = 6.37 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IUQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DITHIONITE-REDUCED AROMATIC AMINE REMARK 900 DEHYDROGENASE (AADH) FROM ALCALIGENES FAECALIS IN COMPLEX WITH REMARK 900 TRYPTAMINE REMARK 900 RELATED ID: 2IUR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF N-QUINOL FORM OF AROMATIC AMINE DEHYDROGENASE REMARK 900 (AADH) FROM ALCALIGENES FAECALIS, FORM A COCRYSTAL REMARK 900 RELATED ID: 2IUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF N-QUINOL FORM OF AROMATIC AMINE DEHYDROGENASE REMARK 900 (AADH) FROM ALCALIGENES FAECALIS, FORM BREMARK 999 REMARK 900 RELATED ID: 2IVA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF N-SEMIQUINONE FORM OF AROMATIC AMINE REMARK 900 DEHYDROGENASE (AADH) FROM ALCALIGENES FAECALIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DATABASE REFERENCES FOR CHAIN A, B, D, H DO NOT REMARK 999 CURRENTLY EXIST. DBREF 2IUP A 73 433 PDB 2IUP 2IUP 73 433 DBREF 2IUP B 73 433 PDB 2IUP 2IUP 73 433 DBREF 2IUP D 48 182 PDB 2IUP 2IUP 48 182 DBREF 2IUP H 48 182 PDB 2IUP 2IUP 48 182 SEQRES 1 A 361 ARG GLU VAL LEU THR GLY GLY HIS SER VAL SER ALA PRO SEQRES 2 A 361 GLN GLU ASN ARG ILE TYR VAL MET ASP SER VAL PHE MET SEQRES 3 A 361 HIS LEU THR GLU SER ARG VAL HIS VAL TYR ASP TYR THR SEQRES 4 A 361 ASN GLY LYS PHE LEU GLY MET VAL PRO THR ALA PHE ASN SEQRES 5 A 361 GLY HIS VAL GLN VAL SER ASN ASP GLY LYS LYS ILE TYR SEQRES 6 A 361 THR MET THR THR TYR HIS GLU ARG ILE THR ARG GLY LYS SEQRES 7 A 361 ARG SER ASP VAL VAL GLU VAL TRP ASP ALA ASP LYS LEU SEQRES 8 A 361 THR PHE GLU LYS GLU ILE SER LEU PRO PRO LYS ARG VAL SEQRES 9 A 361 GLN GLY LEU ASN TYR ASP GLY LEU PHE ARG GLN THR THR SEQRES 10 A 361 ASP GLY LYS PHE ILE VAL LEU GLN ASN ALA SER PRO ALA SEQRES 11 A 361 THR SER ILE GLY ILE VAL ASP VAL ALA LYS GLY ASP TYR SEQRES 12 A 361 VAL GLU ASP VAL THR ALA ALA ALA GLY CYS TRP SER VAL SEQRES 13 A 361 ILE PRO GLN PRO ASN ARG PRO ARG SER PHE MET THR ILE SEQRES 14 A 361 CYS GLY ASP GLY GLY LEU LEU THR ILE ASN LEU GLY GLU SEQRES 15 A 361 ASP GLY LYS VAL ALA SER GLN SER ARG SER LYS GLN MET SEQRES 16 A 361 PHE SER VAL LYS ASP ASP PRO ILE PHE ILE ALA PRO ALA SEQRES 17 A 361 LEU ASP LYS ASP LYS ALA HIS PHE VAL SER TYR TYR GLY SEQRES 18 A 361 ASN VAL TYR SER ALA ASP PHE SER GLY ASP GLU VAL LYS SEQRES 19 A 361 VAL ASP GLY PRO TRP SER LEU LEU ASN ASP GLU ASP LYS SEQRES 20 A 361 ALA LYS ASN TRP VAL PRO GLY GLY TYR ASN LEU VAL GLY SEQRES 21 A 361 LEU HIS ARG ALA SER GLY ARG MET TYR VAL PHE MET HIS SEQRES 22 A 361 PRO ASP GLY LYS GLU GLY THR HIS LYS PHE PRO ALA ALA SEQRES 23 A 361 GLU ILE TRP VAL MET ASP THR LYS THR LYS GLN ARG VAL SEQRES 24 A 361 ALA ARG ILE PRO GLY ARG ASP ALA LEU SER MET THR ILE SEQRES 25 A 361 ASP GLN GLN ARG ASN LEU MET LEU THR LEU ASP GLY GLY SEQRES 26 A 361 ASN VAL ASN VAL TYR ASP ILE SER GLN PRO GLU PRO LYS SEQRES 27 A 361 LEU LEU ARG THR ILE GLU GLY ALA ALA GLU ALA SER LEU SEQRES 28 A 361 GLN VAL GLN PHE HIS PRO VAL GLY GLY THR SEQRES 1 B 361 ARG GLU VAL LEU THR GLY GLY HIS SER VAL SER ALA PRO SEQRES 2 B 361 GLN GLU ASN ARG ILE TYR VAL MET ASP SER VAL PHE MET SEQRES 3 B 361 HIS LEU THR GLU SER ARG VAL HIS VAL TYR ASP TYR THR SEQRES 4 B 361 ASN GLY LYS PHE LEU GLY MET VAL PRO THR ALA PHE ASN SEQRES 5 B 361 GLY HIS VAL GLN VAL SER ASN ASP GLY LYS LYS ILE TYR SEQRES 6 B 361 THR MET THR THR TYR HIS GLU ARG ILE THR ARG GLY LYS SEQRES 7 B 361 ARG SER ASP VAL VAL GLU VAL TRP ASP ALA ASP LYS LEU SEQRES 8 B 361 THR PHE GLU LYS GLU ILE SER LEU PRO PRO LYS ARG VAL SEQRES 9 B 361 GLN GLY LEU ASN TYR ASP GLY LEU PHE ARG GLN THR THR SEQRES 10 B 361 ASP GLY LYS PHE ILE VAL LEU GLN ASN ALA SER PRO ALA SEQRES 11 B 361 THR SER ILE GLY ILE VAL ASP VAL ALA LYS GLY ASP TYR SEQRES 12 B 361 VAL GLU ASP VAL THR ALA ALA ALA GLY CYS TRP SER VAL SEQRES 13 B 361 ILE PRO GLN PRO ASN ARG PRO ARG SER PHE MET THR ILE SEQRES 14 B 361 CYS GLY ASP GLY GLY LEU LEU THR ILE ASN LEU GLY GLU SEQRES 15 B 361 ASP GLY LYS VAL ALA SER GLN SER ARG SER LYS GLN MET SEQRES 16 B 361 PHE SER VAL LYS ASP ASP PRO ILE PHE ILE ALA PRO ALA SEQRES 17 B 361 LEU ASP LYS ASP LYS ALA HIS PHE VAL SER TYR TYR GLY SEQRES 18 B 361 ASN VAL TYR SER ALA ASP PHE SER GLY ASP GLU VAL LYS SEQRES 19 B 361 VAL ASP GLY PRO TRP SER LEU LEU ASN ASP GLU ASP LYS SEQRES 20 B 361 ALA LYS ASN TRP VAL PRO GLY GLY TYR ASN LEU VAL GLY SEQRES 21 B 361 LEU HIS ARG ALA SER GLY ARG MET TYR VAL PHE MET HIS SEQRES 22 B 361 PRO ASP GLY LYS GLU GLY THR HIS LYS PHE PRO ALA ALA SEQRES 23 B 361 GLU ILE TRP VAL MET ASP THR LYS THR LYS GLN ARG VAL SEQRES 24 B 361 ALA ARG ILE PRO GLY ARG ASP ALA LEU SER MET THR ILE SEQRES 25 B 361 ASP GLN GLN ARG ASN LEU MET LEU THR LEU ASP GLY GLY SEQRES 26 B 361 ASN VAL ASN VAL TYR ASP ILE SER GLN PRO GLU PRO LYS SEQRES 27 B 361 LEU LEU ARG THR ILE GLU GLY ALA ALA GLU ALA SER LEU SEQRES 28 B 361 GLN VAL GLN PHE HIS PRO VAL GLY GLY THR SEQRES 1 D 135 ALA GLY GLY GLY GLY SER SER SER GLY ALA ASP HIS ILE SEQRES 2 D 135 SER LEU ASN PRO ASP LEU ALA ASN GLU ASP GLU VAL ASN SEQRES 3 D 135 SER CYS ASP TYR TRP ARG HIS CYS ALA VAL ASP GLY PHE SEQRES 4 D 135 LEU CYS SER CYS CYS GLY GLY THR THR THR THR CYS PRO SEQRES 5 D 135 PRO GLY SER THR PRO SER PRO ILE SER TRQ ILE GLY THR SEQRES 6 D 135 CYS HIS ASN PRO HIS ASP GLY LYS ASP TYR LEU ILE SER SEQRES 7 D 135 TYR HIS ASP CYS CYS GLY LYS THR ALA CYS GLY ARG CYS SEQRES 8 D 135 GLN CYS ASN THR GLN THR ARG GLU ARG PRO GLY TYR GLU SEQRES 9 D 135 PHE PHE LEU HIS ASN ASP VAL ASN TRP CYS MET ALA ASN SEQRES 10 D 135 GLU ASN SER THR PHE HIS CYS THR THR SER VAL LEU VAL SEQRES 11 D 135 GLY LEU ALA LYS ASN SEQRES 1 H 135 ALA GLY GLY GLY GLY SER SER SER GLY ALA ASP HIS ILE SEQRES 2 H 135 SER LEU ASN PRO ASP LEU ALA ASN GLU ASP GLU VAL ASN SEQRES 3 H 135 SER CYS ASP TYR TRP ARG HIS CYS ALA VAL ASP GLY PHE SEQRES 4 H 135 LEU CYS SER CYS CYS GLY GLY THR THR THR THR CYS PRO SEQRES 5 H 135 PRO GLY SER THR PRO SER PRO ILE SER TRQ ILE GLY THR SEQRES 6 H 135 CYS HIS ASN PRO HIS ASP GLY LYS ASP TYR LEU ILE SER SEQRES 7 H 135 TYR HIS ASP CYS CYS GLY LYS THR ALA CYS GLY ARG CYS SEQRES 8 H 135 GLN CYS ASN THR GLN THR ARG GLU ARG PRO GLY TYR GLU SEQRES 9 H 135 PHE PHE LEU HIS ASN ASP VAL ASN TRP CYS MET ALA ASN SEQRES 10 H 135 GLU ASN SER THR PHE HIS CYS THR THR SER VAL LEU VAL SEQRES 11 H 135 GLY LEU ALA LYS ASN MODRES 2IUP TRQ D 109 TRP MODRES 2IUP TRQ H 109 TRP HET TRQ D 109 16 HET TRQ H 109 16 HETNAM TRQ 2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)- HETNAM 2 TRQ PROPIONIC ACID FORMUL 3 TRQ 2(C11 H10 N2 O4) FORMUL 5 HOH *1173(H2 O) HELIX 1 1 PRO A 85 GLU A 87 5 3 HELIX 2 2 VAL A 96 GLU A 102 5 7 HELIX 3 3 TYR A 181 GLY A 183 5 3 HELIX 4 4 THR A 220 ALA A 223 5 4 HELIX 5 5 ASN A 315 LYS A 321 1 7 HELIX 6 6 PRO B 85 GLU B 87 5 3 HELIX 7 7 VAL B 96 GLU B 102 5 7 HELIX 8 8 TYR B 181 GLY B 183 5 3 HELIX 9 9 THR B 220 ALA B 223 5 4 HELIX 10 10 ASN B 315 LYS B 321 1 7 HELIX 11 11 TYR D 77 CYS D 81 5 5 HELIX 12 12 CYS D 88 CYS D 91 5 4 HELIX 13 13 PRO D 148 HIS D 155 5 8 HELIX 14 14 ASN H 63 ALA H 67 5 5 HELIX 15 15 ASN H 68 ASN H 73 1 6 HELIX 16 16 TYR H 77 CYS H 81 5 5 HELIX 17 17 CYS H 88 CYS H 91 5 4 HELIX 18 18 PRO H 148 HIS H 155 5 8 SHEET 1 AA 4 PHE A 115 PRO A 120 0 SHEET 2 AA 4 ARG A 104 ASP A 109 -1 O VAL A 105 N VAL A 119 SHEET 3 AA 4 ARG A 89 ASP A 94 -1 O ILE A 90 N TYR A 108 SHEET 4 AA 4 SER A 422 PHE A 427 -1 N LEU A 423 O MET A 93 SHEET 1 AB 4 PHE A 123 VAL A 129 0 SHEET 2 AB 4 LYS A 135 HIS A 143 -1 O TYR A 137 N GLN A 128 SHEET 3 AB 4 ARG A 151 ASP A 159 -1 O SER A 152 N TYR A 142 SHEET 4 AB 4 PHE A 165 LEU A 171 -1 N GLU A 166 O VAL A 157 SHEET 1 AC 4 PHE A 185 GLN A 187 0 SHEET 2 AC 4 PHE A 193 ALA A 199 -1 O VAL A 195 N ARG A 186 SHEET 3 AC 4 THR A 203 ASP A 209 -1 O SER A 204 N ASN A 198 SHEET 4 AC 4 ASP A 214 VAL A 219 -1 O ASP A 214 N ASP A 209 SHEET 1 AD 4 CYS A 225 PRO A 230 0 SHEET 2 AD 4 SER A 237 CYS A 242 -1 O MET A 239 N ILE A 229 SHEET 3 AD 4 LEU A 247 LEU A 252 -1 O LEU A 248 N THR A 240 SHEET 4 AD 4 VAL A 258 ARG A 263 -1 N ALA A 259 O ASN A 251 SHEET 1 AE 4 ALA A 280 LEU A 281 0 SHEET 2 AE 4 LYS A 285 VAL A 289 -1 O HIS A 287 N ALA A 280 SHEET 3 AE 4 ASN A 294 ASP A 299 -1 O TYR A 296 N PHE A 288 SHEET 4 AE 4 LYS A 306 SER A 312 -1 O LYS A 306 N ASP A 299 SHEET 1 AF 3 VAL A 324 PRO A 325 0 SHEET 2 AF 3 ARG A 339 HIS A 345 -1 O HIS A 345 N VAL A 324 SHEET 3 AF 3 VAL A 331 HIS A 334 -1 O GLY A 332 N TYR A 341 SHEET 1 AG 4 VAL A 324 PRO A 325 0 SHEET 2 AG 4 ARG A 339 HIS A 345 -1 O HIS A 345 N VAL A 324 SHEET 3 AG 4 GLU A 359 ASP A 364 -1 O GLU A 359 N MET A 344 SHEET 4 AG 4 GLN A 369 PRO A 375 -1 O GLN A 369 N ASP A 364 SHEET 1 AH 4 SER A 381 ASP A 385 0 SHEET 2 AH 4 LEU A 390 LEU A 394 -1 O LEU A 390 N ASP A 385 SHEET 3 AH 4 VAL A 399 ASP A 403 -1 O ASN A 400 N THR A 393 SSBOND 1 CYS A 225 CYS A 242 1555 1555 2.04 SSBOND 2 CYS B 225 CYS B 242 1555 1555 2.03 SSBOND 3 CYS D 75 CYS D 140 1555 1555 2.03 SSBOND 4 CYS D 81 CYS D 113 1555 1555 2.00 SSBOND 5 CYS D 88 CYS D 171 1555 1555 2.04 SSBOND 6 CYS D 90 CYS D 138 1555 1555 2.04 SSBOND 7 CYS D 91 CYS D 135 1555 1555 2.04 SSBOND 8 CYS D 98 CYS D 129 1555 1555 2.03 SSBOND 9 CYS D 130 CYS D 161 1555 1555 2.02 SSBOND 10 CYS H 75 CYS H 140 1555 1555 2.05 SSBOND 11 CYS H 81 CYS H 113 1555 1555 2.05 SSBOND 12 CYS H 88 CYS H 171 1555 1555 2.08 SSBOND 13 CYS H 90 CYS H 138 1555 1555 2.05 SSBOND 14 CYS H 91 CYS H 135 1555 1555 2.02 SSBOND 15 CYS H 98 CYS H 129 1555 1555 2.01 SSBOND 16 CYS H 130 CYS H 161 1555 1555 2.04 LINK C SER D 108 N TRQ D 109 1555 1555 1.33 LINK C TRQ D 109 N ILE D 110 1555 1555 1.32 LINK CE3 TRQ D 109 CD1 TRP D 160 1555 1555 1.58 LINK C SER H 108 N TRQ H 109 1555 1555 1.32 LINK CE3 TRQ H 109 CD1 TRP H 160 1555 1555 1.57 LINK C TRQ H 109 N ILE H 110 1555 1555 1.32 CISPEP 1 GLY A 309 PRO A 310 0 20.41 CISPEP 2 GLY B 309 PRO B 310 0 17.35 CRYST1 70.960 89.063 80.802 90.00 90.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014092 0.000000 0.000057 0.00000 SCALE2 0.000000 0.011228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012376 0.00000 MTRIX1 1 -0.997000 0.073000 0.020000 0.06958 1 MTRIX2 1 0.075000 0.941000 0.329000 -0.08810 1 MTRIX3 1 0.005000 0.330000 -0.944000 0.55727 1