PDB Short entry for 2IV6 HEADER PRION PROTEIN 08-JUN-06 2IV6 TITLE HPRP-173-195-D178N SOLUTION STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 173-195; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS PRION PROTEIN, HUMAN PRION PROTEIN, PEPTIDE, SOLUTION KEYWDS 2 STRUCTURE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR G.SAVIANO,T.TANCREDI REVDAT 2 24-FEB-09 2IV6 1 VERSN REVDAT 1 28-NOV-06 2IV6 0 JRNL AUTH L.RONGA,P.PALLADINO,B.TIZZANO,S.COSTANTINI, JRNL AUTH 2 A.FACCHIANO,G.SAVIANO,T.TANCREDI,M.RUVO,R.RAGONE, JRNL AUTH 3 E.BENEDETTI,F.ROSSI JRNL TITL THE CONFORMATIONAL LANDSCAPE OF THE HUMAN PRION JRNL TITL 2 PROTEIN ALPHA 2 DOMAIN: COMPARATIVE NMR AND MD JRNL TITL 3 STUDIES ON HELIX-2-DERIVED PEPTIDES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA REMARK 3 AUTHORS : P.GUNTERT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IV6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JUN-06. REMARK 100 THE PDBE ID CODE IS EBI-29054. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300.0 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1.0 REMARK 210 SAMPLE CONTENTS : TRIFLUOROETHANOL-D2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY,COSY,TOCSY,15N-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 REMARK 210 SPECTROMETER MODEL : OTHER REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : DYANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 178 TO ASN REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 175 - H ASN A 178 1.59 REMARK 500 O ASN A 181 - H LYS A 185 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 174 -56.60 77.59 REMARK 500 1 PHE A 175 -81.63 -71.27 REMARK 500 1 GLN A 186 -44.49 -155.02 REMARK 500 1 HIS A 187 154.51 -39.95 REMARK 500 1 THR A 188 -52.92 78.41 REMARK 500 1 THR A 191 -51.04 81.75 REMARK 500 1 THR A 193 -157.71 47.76 REMARK 500 2 ASN A 174 -56.99 75.55 REMARK 500 2 PHE A 175 -85.13 -73.24 REMARK 500 2 LYS A 185 -47.76 88.33 REMARK 500 2 HIS A 187 -98.68 -83.94 REMARK 500 2 THR A 188 -30.57 -38.11 REMARK 500 2 THR A 190 -91.06 -38.60 REMARK 500 2 THR A 191 -76.82 -142.16 REMARK 500 2 THR A 192 -12.20 84.06 REMARK 500 2 THR A 193 -150.03 -77.49 REMARK 500 3 ASN A 174 -58.07 70.98 REMARK 500 3 PHE A 175 -83.97 -71.93 REMARK 500 3 LYS A 185 21.10 85.43 REMARK 500 3 GLN A 186 -98.64 -145.34 REMARK 500 3 HIS A 187 -95.02 53.15 REMARK 500 3 THR A 188 -32.66 -36.73 REMARK 500 3 THR A 192 -75.86 -145.26 REMARK 500 3 THR A 193 -39.86 -172.83 REMARK 500 4 ASN A 174 -57.23 76.67 REMARK 500 4 LYS A 185 -40.31 89.88 REMARK 500 4 HIS A 187 -81.64 -97.83 REMARK 500 4 THR A 192 -75.59 -154.03 REMARK 500 4 THR A 193 -176.29 -172.91 REMARK 500 5 ASN A 174 -57.36 72.70 REMARK 500 5 PHE A 175 -81.10 -73.95 REMARK 500 5 THR A 183 -29.22 -39.79 REMARK 500 5 ILE A 184 -77.36 -90.61 REMARK 500 5 LYS A 185 56.30 86.70 REMARK 500 5 GLN A 186 -52.51 -147.31 REMARK 500 5 HIS A 187 -103.02 -53.82 REMARK 500 5 THR A 188 -34.23 -35.57 REMARK 500 5 THR A 191 -81.63 166.08 REMARK 500 5 THR A 192 -48.45 -166.99 REMARK 500 6 ASN A 174 -55.21 77.38 REMARK 500 6 PHE A 175 -85.25 -75.73 REMARK 500 6 THR A 183 -31.96 -38.16 REMARK 500 6 ILE A 184 -76.27 -87.71 REMARK 500 6 LYS A 185 55.66 86.66 REMARK 500 6 GLN A 186 -63.17 -134.93 REMARK 500 6 HIS A 187 -85.47 -53.53 REMARK 500 6 THR A 188 -32.39 -37.10 REMARK 500 6 THR A 191 -87.04 -94.93 REMARK 500 6 THR A 192 -12.16 83.97 REMARK 500 6 THR A 193 174.75 51.69 REMARK 500 7 ASN A 174 -31.47 -38.36 REMARK 500 7 GLN A 186 -50.65 -150.76 REMARK 500 7 HIS A 187 -103.10 -56.96 REMARK 500 7 THR A 191 -51.07 81.62 REMARK 500 7 THR A 192 -57.41 -168.89 REMARK 500 7 THR A 193 -160.74 44.63 REMARK 500 8 LYS A 185 -46.33 87.54 REMARK 500 8 HIS A 187 -95.11 -86.58 REMARK 500 8 THR A 188 -37.69 -36.17 REMARK 500 8 THR A 191 -51.09 81.59 REMARK 500 8 THR A 192 -54.14 168.60 REMARK 500 9 ASN A 174 -52.86 81.51 REMARK 500 9 LYS A 185 -44.63 89.07 REMARK 500 9 HIS A 187 -101.70 -85.98 REMARK 500 9 THR A 188 -30.44 -37.77 REMARK 500 9 THR A 191 -76.10 -106.43 REMARK 500 9 THR A 192 -55.95 -168.36 REMARK 500 9 THR A 193 -50.46 -162.24 REMARK 500 10 ASN A 174 -29.77 -39.95 REMARK 500 10 LYS A 185 20.42 81.57 REMARK 500 10 GLN A 186 -98.55 -146.13 REMARK 500 10 HIS A 187 -94.48 46.99 REMARK 500 10 THR A 188 -31.09 -37.83 REMARK 500 10 THR A 192 -81.10 -150.60 REMARK 500 10 THR A 193 -48.67 82.94 REMARK 500 11 ASN A 174 -31.34 -38.51 REMARK 500 11 LYS A 185 -48.95 92.14 REMARK 500 11 HIS A 187 -79.45 -90.68 REMARK 500 11 THR A 192 -86.22 -116.42 REMARK 500 11 THR A 193 -159.58 -173.86 REMARK 500 12 LYS A 185 -42.77 88.92 REMARK 500 12 HIS A 187 -101.32 -82.36 REMARK 500 12 THR A 188 -37.17 -37.46 REMARK 500 12 THR A 191 -79.44 -72.66 REMARK 500 12 THR A 192 -79.19 -160.20 REMARK 500 12 THR A 193 -49.15 -162.14 REMARK 500 13 LYS A 185 -44.36 88.55 REMARK 500 13 HIS A 187 -102.63 -92.78 REMARK 500 13 THR A 188 -30.16 -38.17 REMARK 500 13 THR A 192 -12.14 83.98 REMARK 500 14 LYS A 185 -40.75 89.78 REMARK 500 14 HIS A 187 -92.32 -89.30 REMARK 500 14 THR A 188 -36.16 -36.43 REMARK 500 14 THR A 191 -51.19 81.50 REMARK 500 14 THR A 192 -57.95 -167.01 REMARK 500 14 THR A 193 166.82 -47.14 REMARK 500 15 LYS A 185 -36.29 91.05 REMARK 500 15 HIS A 187 -101.99 -97.56 REMARK 500 15 THR A 188 -29.98 -38.35 REMARK 500 16 ASN A 174 -56.69 75.52 REMARK 500 16 PHE A 175 -84.67 -73.29 REMARK 500 16 LYS A 185 -52.15 87.58 REMARK 500 16 HIS A 187 -110.29 -90.07 REMARK 500 16 THR A 188 -29.15 -38.13 REMARK 500 16 THR A 190 -82.03 -44.86 REMARK 500 16 THR A 191 -78.50 -157.08 REMARK 500 16 THR A 192 -55.66 -163.75 REMARK 500 16 THR A 193 -102.81 36.57 REMARK 500 17 ASN A 174 -55.13 77.75 REMARK 500 17 PHE A 175 -85.68 -75.01 REMARK 500 17 ILE A 182 -32.42 -38.83 REMARK 500 17 GLN A 186 -51.05 -146.97 REMARK 500 17 HIS A 187 -104.81 -55.00 REMARK 500 17 THR A 188 -37.46 -33.56 REMARK 500 17 THR A 191 -88.10 -96.95 REMARK 500 17 THR A 192 -11.91 83.91 REMARK 500 18 LYS A 185 -41.84 89.10 REMARK 500 18 HIS A 187 -97.58 -85.89 REMARK 500 18 THR A 188 -32.30 -36.85 REMARK 500 19 GLN A 186 -88.23 -148.27 REMARK 500 19 HIS A 187 -106.09 41.58 REMARK 500 19 THR A 188 -39.69 -33.46 REMARK 500 19 THR A 193 -160.86 46.18 REMARK 500 20 ASN A 174 -30.07 -39.08 REMARK 500 20 LYS A 185 40.02 73.46 REMARK 500 20 GLN A 186 -107.18 -152.73 REMARK 500 20 HIS A 187 -101.91 37.75 REMARK 500 21 ILE A 182 -31.55 -38.39 REMARK 500 21 LYS A 185 -39.97 91.52 REMARK 500 21 HIS A 187 -99.87 -91.83 REMARK 500 21 THR A 191 -74.47 -47.57 REMARK 500 21 THR A 192 -12.03 83.90 REMARK 500 22 ASN A 174 -60.19 66.51 REMARK 500 22 PHE A 175 -89.54 -73.24 REMARK 500 22 LYS A 185 54.96 73.15 REMARK 500 22 GLN A 186 -42.69 -132.35 REMARK 500 22 HIS A 187 -85.07 -82.16 REMARK 500 22 THR A 188 -32.53 -36.83 REMARK 500 22 THR A 191 -65.95 168.44 REMARK 500 22 THR A 192 -68.58 -163.45 REMARK 500 22 THR A 193 -45.13 -164.28 REMARK 500 23 GLN A 186 -44.01 -155.44 REMARK 500 23 HIS A 187 155.27 -37.96 REMARK 500 23 THR A 188 -52.58 77.64 REMARK 500 23 THR A 192 -69.93 -160.45 REMARK 500 23 THR A 193 -51.48 -174.16 REMARK 500 24 ASN A 174 -44.56 85.25 REMARK 500 24 PHE A 175 -83.89 -83.28 REMARK 500 24 LYS A 185 19.66 80.23 REMARK 500 24 GLN A 186 -45.13 -148.06 REMARK 500 24 HIS A 187 156.00 -39.12 REMARK 500 24 THR A 188 -53.42 75.23 REMARK 500 24 THR A 191 -80.71 -38.90 REMARK 500 24 THR A 192 -11.98 83.93 REMARK 500 24 THR A 193 -82.61 -39.26 REMARK 500 25 ASN A 174 -61.37 164.92 REMARK 500 25 LYS A 185 -42.93 87.67 REMARK 500 25 HIS A 187 -80.13 -89.86 REMARK 500 25 THR A 191 -51.05 81.62 REMARK 500 25 THR A 192 -58.44 -161.21 REMARK 500 25 THR A 193 -65.58 -152.12 REMARK 500 26 GLN A 186 -82.88 -155.28 REMARK 500 26 HIS A 187 -102.68 38.80 REMARK 500 26 THR A 190 -38.75 -38.43 REMARK 500 26 THR A 191 -76.81 -61.84 REMARK 500 26 THR A 192 -12.02 83.88 REMARK 500 27 GLN A 186 -43.69 -155.33 REMARK 500 27 HIS A 187 154.20 -37.26 REMARK 500 27 THR A 188 -53.12 77.85 REMARK 500 27 THR A 191 -73.67 -139.95 REMARK 500 27 THR A 192 -55.69 -175.87 REMARK 500 27 THR A 193 -49.87 -168.94 REMARK 500 28 GLN A 186 -44.26 -155.32 REMARK 500 28 HIS A 187 156.75 -38.75 REMARK 500 28 THR A 188 -52.98 76.31 REMARK 500 28 THR A 192 -73.15 -77.41 REMARK 500 28 THR A 193 -155.31 -65.68 REMARK 500 29 ASN A 174 -35.67 -38.99 REMARK 500 29 LYS A 185 20.60 82.15 REMARK 500 29 GLN A 186 -43.77 -155.10 REMARK 500 29 HIS A 187 152.33 -39.03 REMARK 500 29 THR A 188 -52.72 79.20 REMARK 500 29 THR A 192 -66.72 -158.28 REMARK 500 30 ASN A 174 -57.40 73.39 REMARK 500 30 PHE A 175 -85.66 -72.11 REMARK 500 30 LYS A 185 31.99 84.46 REMARK 500 30 GLN A 186 -87.43 -155.09 REMARK 500 30 HIS A 187 -105.96 32.42 REMARK 500 30 THR A 188 -39.04 -33.05 REMARK 500 30 VAL A 189 -29.53 -39.53 REMARK 500 30 THR A 191 -90.89 -132.07 REMARK 500 30 THR A 192 -61.04 -163.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X4Q RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PWI DOMAIN IN U4/U6 REMARK 900 SMALL NUCLEARRIBONUCLEOPROTEIN PRP3(HPRP3) REMARK 900 RELATED ID: 2IV4 RELATED DB: PDB REMARK 900 HPRP180-195 STRUCTURE REMARK 900 RELATED ID: 2IV5 RELATED DB: PDB REMARK 900 HPRP-173-195 SOLUTION STRUCTURE DBREF 2IV6 A 173 195 UNP Q5QPB4 Q5QPB4_HUMAN 173 195 SEQADV 2IV6 ASN A 178 UNP Q5QPB4 ASP 178 ENGINEERED MUTATION SEQRES 1 A 23 ASN ASN PHE VAL HIS ASN CYS VAL ASN ILE THR ILE LYS SEQRES 2 A 23 GLN HIS THR VAL THR THR THR THR LYS GLY HELIX 1 1 HIS A 177 LYS A 185 1 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000