PDB Short entry for 2IV9 HEADER ENDOCYTOSIS/REGULATOR 08-JUN-06 2IV9 TITLE B2-APPENDAGE FROM AP2 IN COMPLEX WITH EPS15 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT BETA-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: APPENDAGE DOMAIN, RESIDUES 700-937; COMPND 5 SYNONYM: BETA2-APPENDAGE, ADAPTER-RELATED PROTEIN COMPLEX 2 BETA-2 COMPND 6 SUBUNIT, BETA-ADAPTIN, PLASMA MEMBRANE ADAPTOR HA2/AP2 ADAPTIN BETA COMPND 7 SUBUNIT, CLATHRIN ASSEMBLY PROTEIN COMPLEX 2 BETA LARGE CHAIN, COMPND 8 AP105B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR SUBSTRATE 15 ISOFORM B; COMPND 12 CHAIN: P; COMPND 13 FRAGMENT: RESIDUES 720-731; COMPND 14 SYNONYM: EPS15, PROTEIN EPS15, AF-1P PROTEIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116 KEYWDS ENDOCYTOSIS/REGULATOR, ALTERNATIVE SPLICING, ENDOCYTOSIS-REGULATOR KEYWDS 2 COMPLEX, B2, EAR, EPS15, ADAPTOR, CALCIUM, APPENDAGE, COATED PITS, KEYWDS 3 ENDOCYTOSIS, PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR M.G.J.FORD,E.M.SCHMID,H.T.MCMAHON REVDAT 4 13-DEC-23 2IV9 1 REMARK REVDAT 3 24-FEB-09 2IV9 1 VERSN REVDAT 2 27-MAR-07 2IV9 1 COMPND REMARK REVDAT 1 13-MAR-07 2IV9 0 JRNL AUTH E.M.SCHMID,M.G.J.FORD,A.BURTEY,G.J.K.PRAEFCKE, JRNL AUTH 2 S.-Y.PEAK-CHEW,I.G.MILLS,A.BENMERAH,H.T.MCMAHON JRNL TITL ROLE OF THE AP2 BETA-APPENDAGE HUB IN RECRUITING PARTNERS JRNL TITL 2 FOR CLATHRIN-COATED VESICLE ASSEMBLY JRNL REF PLOS BIOL. V. 4 262 2006 JRNL REFN ISSN 1544-9173 JRNL PMID 16903783 JRNL DOI 10.1371/JOURNAL.PBIO.0040262 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 36750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1946 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2187 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.218 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3936 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5367 ; 1.219 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 5.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;42.689 ;25.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;14.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;13.388 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 605 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2976 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1581 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2636 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 67 ; 0.239 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2510 ; 0.802 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3948 ; 1.369 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1638 ; 1.614 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 2.556 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. SOME DENSITY WAS SEEN FOR THE KEY BINDING RESIDUES AT REMARK 3 THE EPS15 P-SHORT BINDING SITE ON MOLECULE B BUT A MODEL COULD REMARK 3 NOT BE BUILT UNAMBIGUOSLY. REMARK 4 REMARK 4 2IV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290029069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.50 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E42 CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1M AMMONIUM REMARK 280 ACETATE PH 4.5, PH 4.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.24900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.21550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.09000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.21550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.24900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.09000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 700 REMARK 465 GLY A 701 REMARK 465 ILE B 700 REMARK 465 GLY B 701 REMARK 465 MET B 702 REMARK 465 ALA B 703 REMARK 465 PRO B 704 REMARK 465 SER P 10 REMARK 465 THR P 11 REMARK 465 LEU P 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 732 CZ NH1 NH2 REMARK 470 GLU A 828 CD OE1 OE2 REMARK 470 GLU A 847 CG CD OE1 OE2 REMARK 470 GLN B 733 CG CD OE1 NE2 REMARK 470 GLU B 828 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 891 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 809 -159.37 -126.21 REMARK 500 ASP A 829 49.10 -79.67 REMARK 500 GLU A 882 63.60 37.64 REMARK 500 ALA A 920 74.62 -119.59 REMARK 500 GLN B 733 61.49 39.47 REMARK 500 ALA B 771 70.26 49.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E42 RELATED DB: PDB REMARK 900 BETA2-ADAPTIN APPENDAGE DOMAIN, FROM CLATHRIN ADAPTOR AP2 REMARK 900 RELATED ID: 1GW5 RELATED DB: PDB REMARK 900 AP2 CLATHRIN ADAPTOR CORE REMARK 900 RELATED ID: 2G30 RELATED DB: PDB REMARK 900 BETA APPENDAGE OF AP2 COMPLEXED WITH ARH PEPTIDE REMARK 900 RELATED ID: 2IV8 RELATED DB: PDB REMARK 900 BETA APPENDAGE IN COMPLEX WITH B-ARRESTIN PEPTIDE DBREF 2IV9 A 700 937 UNP P63010 AP2B1_HUMAN 700 937 DBREF 2IV9 B 700 937 UNP P63010 AP2B1_HUMAN 700 937 DBREF 2IV9 P 1 12 UNP Q5JC29 Q5JC29_RAT 720 731 SEQRES 1 A 238 ILE GLY MET ALA PRO GLY GLY TYR VAL ALA PRO LYS ALA SEQRES 2 A 238 VAL TRP LEU PRO ALA VAL LYS ALA LYS GLY LEU GLU ILE SEQRES 3 A 238 SER GLY THR PHE THR HIS ARG GLN GLY HIS ILE TYR MET SEQRES 4 A 238 GLU MET ASN PHE THR ASN LYS ALA LEU GLN HIS MET THR SEQRES 5 A 238 ASP PHE ALA ILE GLN PHE ASN LYS ASN SER PHE GLY VAL SEQRES 6 A 238 ILE PRO SER THR PRO LEU ALA ILE HIS THR PRO LEU MET SEQRES 7 A 238 PRO ASN GLN SER ILE ASP VAL SER LEU PRO LEU ASN THR SEQRES 8 A 238 LEU GLY PRO VAL MET LYS MET GLU PRO LEU ASN ASN LEU SEQRES 9 A 238 GLN VAL ALA VAL LYS ASN ASN ILE ASP VAL PHE TYR PHE SEQRES 10 A 238 SER CYS LEU ILE PRO LEU ASN VAL LEU PHE VAL GLU ASP SEQRES 11 A 238 GLY LYS MET GLU ARG GLN VAL PHE LEU ALA THR TRP LYS SEQRES 12 A 238 ASP ILE PRO ASN GLU ASN GLU LEU GLN PHE GLN ILE LYS SEQRES 13 A 238 GLU CYS HIS LEU ASN ALA ASP THR VAL SER SER LYS LEU SEQRES 14 A 238 GLN ASN ASN ASN VAL TYR THR ILE ALA LYS ARG ASN VAL SEQRES 15 A 238 GLU GLY GLN ASP MET LEU TYR GLN SER LEU LYS LEU THR SEQRES 16 A 238 ASN GLY ILE TRP ILE LEU ALA GLU LEU ARG ILE GLN PRO SEQRES 17 A 238 GLY ASN PRO ASN TYR THR LEU SER LEU LYS CYS ARG ALA SEQRES 18 A 238 PRO GLU VAL SER GLN TYR ILE TYR GLN VAL TYR ASP SER SEQRES 19 A 238 ILE LEU LYS ASN SEQRES 1 B 238 ILE GLY MET ALA PRO GLY GLY TYR VAL ALA PRO LYS ALA SEQRES 2 B 238 VAL TRP LEU PRO ALA VAL LYS ALA LYS GLY LEU GLU ILE SEQRES 3 B 238 SER GLY THR PHE THR HIS ARG GLN GLY HIS ILE TYR MET SEQRES 4 B 238 GLU MET ASN PHE THR ASN LYS ALA LEU GLN HIS MET THR SEQRES 5 B 238 ASP PHE ALA ILE GLN PHE ASN LYS ASN SER PHE GLY VAL SEQRES 6 B 238 ILE PRO SER THR PRO LEU ALA ILE HIS THR PRO LEU MET SEQRES 7 B 238 PRO ASN GLN SER ILE ASP VAL SER LEU PRO LEU ASN THR SEQRES 8 B 238 LEU GLY PRO VAL MET LYS MET GLU PRO LEU ASN ASN LEU SEQRES 9 B 238 GLN VAL ALA VAL LYS ASN ASN ILE ASP VAL PHE TYR PHE SEQRES 10 B 238 SER CYS LEU ILE PRO LEU ASN VAL LEU PHE VAL GLU ASP SEQRES 11 B 238 GLY LYS MET GLU ARG GLN VAL PHE LEU ALA THR TRP LYS SEQRES 12 B 238 ASP ILE PRO ASN GLU ASN GLU LEU GLN PHE GLN ILE LYS SEQRES 13 B 238 GLU CYS HIS LEU ASN ALA ASP THR VAL SER SER LYS LEU SEQRES 14 B 238 GLN ASN ASN ASN VAL TYR THR ILE ALA LYS ARG ASN VAL SEQRES 15 B 238 GLU GLY GLN ASP MET LEU TYR GLN SER LEU LYS LEU THR SEQRES 16 B 238 ASN GLY ILE TRP ILE LEU ALA GLU LEU ARG ILE GLN PRO SEQRES 17 B 238 GLY ASN PRO ASN TYR THR LEU SER LEU LYS CYS ARG ALA SEQRES 18 B 238 PRO GLU VAL SER GLN TYR ILE TYR GLN VAL TYR ASP SER SEQRES 19 B 238 ILE LEU LYS ASN SEQRES 1 P 12 SER PHE GLY ASP GLY PHE ALA ASP PHE SER THR LEU HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 B1003 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 HOH *252(H2 O) HELIX 1 1 PRO A 716 ALA A 720 5 5 HELIX 2 2 PRO A 821 LEU A 825 5 5 HELIX 3 3 GLU A 833 ILE A 844 1 12 HELIX 4 4 ASN A 860 ASN A 870 1 11 HELIX 5 5 ALA A 920 GLU A 922 5 3 HELIX 6 6 VAL A 923 ASN A 937 1 15 HELIX 7 7 PRO B 716 ALA B 720 5 5 HELIX 8 8 PRO B 821 LEU B 825 5 5 HELIX 9 9 GLU B 833 ILE B 844 1 12 HELIX 10 10 PRO B 845 GLU B 849 5 5 HELIX 11 11 ASN B 860 ASN B 870 1 11 HELIX 12 12 ALA B 920 GLU B 922 5 3 HELIX 13 13 VAL B 923 LYS B 936 1 14 HELIX 14 14 ASP P 4 PHE P 9 5 6 SHEET 1 AA 5 ALA A 712 LEU A 715 0 SHEET 2 AA 5 LEU A 723 ARG A 732 -1 O ILE A 725 N TRP A 714 SHEET 3 AA 5 HIS A 735 ASN A 744 -1 O HIS A 735 N ARG A 732 SHEET 4 AA 5 SER A 781 ASN A 789 -1 O ILE A 782 N PHE A 742 SHEET 5 AA 5 ILE A 765 PRO A 766 -1 O ILE A 765 N ASN A 789 SHEET 1 AB 3 ALA A 754 PHE A 757 0 SHEET 2 AB 3 ASN A 802 LYS A 808 -1 O ALA A 806 N GLN A 756 SHEET 3 AB 3 VAL A 813 LEU A 819 -1 O PHE A 814 N VAL A 807 SHEET 1 AC 5 LEU A 850 LYS A 855 0 SHEET 2 AC 5 ASN A 911 LYS A 917 -1 O TYR A 912 N ILE A 854 SHEET 3 AC 5 TRP A 898 ILE A 905 -1 O LEU A 900 N LYS A 917 SHEET 4 AC 5 GLN A 884 LYS A 892 -1 O ASP A 885 N ILE A 905 SHEET 5 AC 5 TYR A 874 VAL A 881 -1 O TYR A 874 N SER A 890 SHEET 1 BA 5 ALA B 712 LEU B 715 0 SHEET 2 BA 5 LEU B 723 ARG B 732 -1 O ILE B 725 N LEU B 715 SHEET 3 BA 5 HIS B 735 ASN B 744 -1 O HIS B 735 N ARG B 732 SHEET 4 BA 5 SER B 781 ASN B 789 -1 O ILE B 782 N PHE B 742 SHEET 5 BA 5 ILE B 765 PRO B 766 -1 O ILE B 765 N ASN B 789 SHEET 1 BB 3 ALA B 754 PHE B 757 0 SHEET 2 BB 3 ASN B 802 LYS B 808 -1 O ALA B 806 N GLN B 756 SHEET 3 BB 3 VAL B 813 LEU B 819 -1 O PHE B 814 N VAL B 807 SHEET 1 BC 5 LEU B 850 ILE B 854 0 SHEET 2 BC 5 TYR B 912 LYS B 917 -1 O TYR B 912 N ILE B 854 SHEET 3 BC 5 TRP B 898 ILE B 905 -1 O LEU B 900 N LYS B 917 SHEET 4 BC 5 GLN B 884 LYS B 892 -1 O ASP B 885 N ILE B 905 SHEET 5 BC 5 TYR B 874 VAL B 881 -1 O TYR B 874 N SER B 890 CISPEP 1 GLU A 798 PRO A 799 0 -0.11 CISPEP 2 GLU B 798 PRO B 799 0 -8.77 SITE 1 AC1 7 PRO A 793 VAL A 794 HOH A2065 HOH A2133 SITE 2 AC1 7 LYS B 855 ARG B 919 HOH B2102 SITE 1 AC2 6 HIS A 731 GLY A 734 VAL A 827 GLU A 828 SITE 2 AC2 6 HOH A2134 HOH A2135 SITE 1 AC3 6 HIS B 731 GLY B 734 VAL B 827 GLU B 828 SITE 2 AC3 6 HOH B2111 HOH B2112 CRYST1 58.498 72.180 116.431 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017095 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008589 0.00000