PDB Short entry for 2IWI HEADER TRANSFERASE 30-JUN-06 2IWI TITLE CRYSTAL STRUCTURE OF THE HUMAN PIM2 IN COMPLEX WITH A RUTHENIUM TITLE 2 ORGANOMETALLIC LIGAND RU1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HUMAN PIM2, PIM-2H; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLIC-SGC1 KEYWDS NUCLEOTIDE-BINDING, SERINE/THREONINE-PROTEIN KINASE, PIM2, KINASE, KEYWDS 2 CANCER, LEUKEMIA, TRANSFERASE, ATP-BINDING, PROTO-ONCOGENE, KEYWDS 3 PHOSPHORYLATION EXPDTA X-RAY DIFFRACTION AUTHOR S.RUSSO,J.E.DEBRECZENI,A.AMOS,A.N.BULLOCK,O.FEDOROV,F.NIESEN, AUTHOR 2 F.SOBOTT,A.TURNBULL,A.C.W.PIKE,E.UGOCHUKWU,E.PAPAGRIGORIOU, AUTHOR 3 G.BUNKOCZI,F.GORREC,A.EDWARDS,C.ARROWSMITH,J.WEIGELT,M.SUNDSTROM, AUTHOR 4 F.VON DELFT,S.KNAPP REVDAT 7 13-DEC-23 2IWI 1 REMARK REVDAT 6 08-MAY-19 2IWI 1 REMARK REVDAT 5 28-FEB-18 2IWI 1 SOURCE JRNL REVDAT 4 24-JAN-18 2IWI 1 AUTHOR JRNL REVDAT 3 03-NOV-09 2IWI 1 AUTHOR JRNL REVDAT 2 24-FEB-09 2IWI 1 VERSN REVDAT 1 02-AUG-06 2IWI 0 JRNL AUTH A.N.BULLOCK,S.RUSSO,A.AMOS,N.PAGANO,H.BREGMAN, JRNL AUTH 2 J.E.DEBRECZENI,W.H.LEE,F.VON DELFT,E.MEGGERS,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF THE PIM2 KINASE IN COMPLEX WITH AN JRNL TITL 2 ORGANORUTHENIUM INHIBITOR. JRNL REF PLOS ONE V. 4 E7112 2009 JRNL REFN ESSN 1932-6203 JRNL PMID 19841674 JRNL DOI 10.1371/JOURNAL.PONE.0007112 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 15818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1163 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3686 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.73000 REMARK 3 B22 (A**2) : -5.73000 REMARK 3 B33 (A**2) : 8.60000 REMARK 3 B12 (A**2) : -2.87000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.485 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.402 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.408 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.383 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3872 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2545 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5352 ; 1.265 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6191 ; 0.923 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 5.846 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;32.200 ;22.886 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 538 ;18.296 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.179 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 588 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4331 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 805 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 981 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2585 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1931 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1992 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.141 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 25 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2508 ; 0.423 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3919 ; 0.699 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1815 ; 0.793 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1382 ; 1.256 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 32 A 287 3 REMARK 3 1 B 32 B 287 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1374 ; 0.04 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 1543 ; 0.42 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1374 ; 2.91 ; 15.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1543 ; 3.14 ; 15.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1289 A 1289 4 REMARK 3 1 B 1289 B 1289 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 43 ; 0.03 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 43 ; 0.03 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 43 ; 1.81 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 43 ; 1.81 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IWI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-06. REMARK 100 THE DEPOSITION ID IS D_1290029241. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 44.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1XWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 UL SITTING DROPS, 1.6 M SODIUM REMARK 280 -POTASSIUM PHOSPHATE, 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 76.53500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.18750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.20000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 76.53500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.18750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.20000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 76.53500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.18750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.20000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 88.37501 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.40000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 88.37501 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.40000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 88.37501 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLY A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 PRO A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 PRO A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 LYS A 23 REMARK 465 ASP A 24 REMARK 465 ARG A 25 REMARK 465 GLU A 26 REMARK 465 ALA A 27 REMARK 465 PHE A 28 REMARK 465 GLU A 29 REMARK 465 ALA A 30 REMARK 465 GLU A 31 REMARK 465 GLY A 70 REMARK 465 TRP A 71 REMARK 465 SER A 72 REMARK 465 PRO A 73 REMARK 465 LEU A 74 REMARK 465 SER A 75 REMARK 465 ASP A 76 REMARK 465 SER A 77 REMARK 465 GLU A 107 REMARK 465 THR A 108 REMARK 465 GLN A 109 REMARK 465 GLU A 110 REMARK 465 GLY A 111 REMARK 465 PRO A 289 REMARK 465 ALA A 290 REMARK 465 GLU A 291 REMARK 465 ASP A 292 REMARK 465 VAL A 293 REMARK 465 PRO A 294 REMARK 465 LEU A 295 REMARK 465 ASN A 296 REMARK 465 PRO A 297 REMARK 465 SER A 298 REMARK 465 LYS A 299 REMARK 465 GLY A 300 REMARK 465 GLY A 301 REMARK 465 PRO A 302 REMARK 465 ALA A 303 REMARK 465 PRO A 304 REMARK 465 LEU A 305 REMARK 465 ALA A 306 REMARK 465 TRP A 307 REMARK 465 SER A 308 REMARK 465 LEU A 309 REMARK 465 LEU A 310 REMARK 465 PRO A 311 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 PRO B 5 REMARK 465 LEU B 6 REMARK 465 GLN B 7 REMARK 465 GLY B 8 REMARK 465 PRO B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 PRO B 16 REMARK 465 THR B 17 REMARK 465 PRO B 18 REMARK 465 PRO B 19 REMARK 465 PRO B 20 REMARK 465 GLY B 21 REMARK 465 ASN B 66 REMARK 465 ARG B 67 REMARK 465 VAL B 68 REMARK 465 LEU B 69 REMARK 465 GLY B 70 REMARK 465 TRP B 71 REMARK 465 SER B 72 REMARK 465 PRO B 73 REMARK 465 LEU B 74 REMARK 465 SER B 75 REMARK 465 ASP B 76 REMARK 465 SER B 77 REMARK 465 VAL B 78 REMARK 465 THR B 108 REMARK 465 GLN B 109 REMARK 465 GLU B 110 REMARK 465 GLY B 111 REMARK 465 THR B 288 REMARK 465 PRO B 289 REMARK 465 ALA B 290 REMARK 465 GLU B 291 REMARK 465 ASP B 292 REMARK 465 VAL B 293 REMARK 465 PRO B 294 REMARK 465 LEU B 295 REMARK 465 ASN B 296 REMARK 465 PRO B 297 REMARK 465 SER B 298 REMARK 465 LYS B 299 REMARK 465 GLY B 300 REMARK 465 GLY B 301 REMARK 465 PRO B 302 REMARK 465 ALA B 303 REMARK 465 PRO B 304 REMARK 465 LEU B 305 REMARK 465 ALA B 306 REMARK 465 TRP B 307 REMARK 465 SER B 308 REMARK 465 LEU B 309 REMARK 465 LEU B 310 REMARK 465 PRO B 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 33 CD NE CZ NH1 NH2 REMARK 470 LYS A 40 CD CE NZ REMARK 470 HIS A 50 ND1 CD2 CE1 NE2 REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 ARG A 55 NE CZ NH1 NH2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 67 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 68 CG1 CG2 REMARK 470 LEU A 69 CG CD1 CD2 REMARK 470 VAL A 78 CG1 CG2 REMARK 470 HIS A 96 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 102 CG CD1 CD2 REMARK 470 MET A 113 CG SD CE REMARK 470 ARG A 118 NE CZ NH1 NH2 REMARK 470 LEU A 120 CG CD1 CD2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 ARG A 162 NE CZ NH1 NH2 REMARK 470 ARG A 174 CD NE CZ NH1 NH2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 ASP A 191 CG OD1 OD2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 GLN A 213 CD OE1 NE2 REMARK 470 GLN A 242 CD OE1 NE2 REMARK 470 LEU A 245 CG CD1 CD2 REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 GLU A 279 CD OE1 OE2 REMARK 470 LYS B 23 CG CD CE NZ REMARK 470 ASP B 24 CG OD1 OD2 REMARK 470 ARG B 25 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 PHE B 28 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ARG B 33 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 34 CG CD1 CD2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 LYS B 61 CD CE NZ REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 82 CD1 CD2 REMARK 470 TRP B 88 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 88 CZ3 CH2 REMARK 470 HIS B 96 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 107 CG CD OE1 OE2 REMARK 470 LEU B 120 CG CD1 CD2 REMARK 470 LYS B 132 CE NZ REMARK 470 GLU B 167 OE1 OE2 REMARK 470 ARG B 174 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 175 CD NE CZ NH1 NH2 REMARK 470 GLU B 192 CG CD OE1 OE2 REMARK 470 GLN B 213 CD OE1 NE2 REMARK 470 ARG B 240 NE CZ NH1 NH2 REMARK 470 LYS B 270 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 220 OG SER A 223 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 145 C GLY A 145 O 0.101 REMARK 500 VAL A 148 CB VAL A 148 CG1 0.184 REMARK 500 GLU B 31 CD GLU B 31 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 43 3.42 -67.26 REMARK 500 VAL A 68 -77.59 -142.18 REMARK 500 THR A 79 56.47 -114.53 REMARK 500 PRO A 97 39.30 -82.69 REMARK 500 ARG A 162 10.21 58.51 REMARK 500 ASP A 163 55.95 -157.31 REMARK 500 ASP A 182 90.42 68.74 REMARK 500 LEU A 267 50.98 -91.84 REMARK 500 PRO A 284 -35.25 -32.98 REMARK 500 PHE B 43 6.53 -67.54 REMARK 500 PRO B 97 38.86 -83.69 REMARK 500 GLN B 123 137.86 -170.34 REMARK 500 ARG B 162 10.52 59.85 REMARK 500 ASP B 163 52.39 -156.12 REMARK 500 ASP B 182 93.40 68.46 REMARK 500 GLU B 248 99.77 -68.40 REMARK 500 LEU B 267 51.31 -91.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 96 PRO A 97 -32.02 REMARK 500 GLN A 287 THR A 288 147.31 REMARK 500 HIS B 96 PRO B 97 -30.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HB1 A 1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HB1 B 1288 DBREF 2IWI A 0 0 PDB 2IWI 2IWI 0 0 DBREF 2IWI A 1 311 UNP Q9P1W9 PIM2_HUMAN 1 311 DBREF 2IWI B 0 0 PDB 2IWI 2IWI 0 0 DBREF 2IWI B 1 311 UNP Q9P1W9 PIM2_HUMAN 1 311 SEQRES 1 A 312 SER MET LEU THR LYS PRO LEU GLN GLY PRO PRO ALA PRO SEQRES 2 A 312 PRO GLY THR PRO THR PRO PRO PRO GLY GLY LYS ASP ARG SEQRES 3 A 312 GLU ALA PHE GLU ALA GLU TYR ARG LEU GLY PRO LEU LEU SEQRES 4 A 312 GLY LYS GLY GLY PHE GLY THR VAL PHE ALA GLY HIS ARG SEQRES 5 A 312 LEU THR ASP ARG LEU GLN VAL ALA ILE LYS VAL ILE PRO SEQRES 6 A 312 ARG ASN ARG VAL LEU GLY TRP SER PRO LEU SER ASP SER SEQRES 7 A 312 VAL THR CYS PRO LEU GLU VAL ALA LEU LEU TRP LYS VAL SEQRES 8 A 312 GLY ALA GLY GLY GLY HIS PRO GLY VAL ILE ARG LEU LEU SEQRES 9 A 312 ASP TRP PHE GLU THR GLN GLU GLY PHE MET LEU VAL LEU SEQRES 10 A 312 GLU ARG PRO LEU PRO ALA GLN ASP LEU PHE ASP TYR ILE SEQRES 11 A 312 THR GLU LYS GLY PRO LEU GLY GLU GLY PRO SER ARG CYS SEQRES 12 A 312 PHE PHE GLY GLN VAL VAL ALA ALA ILE GLN HIS CYS HIS SEQRES 13 A 312 SER ARG GLY VAL VAL HIS ARG ASP ILE LYS ASP GLU ASN SEQRES 14 A 312 ILE LEU ILE ASP LEU ARG ARG GLY CYS ALA LYS LEU ILE SEQRES 15 A 312 ASP PHE GLY SER GLY ALA LEU LEU HIS ASP GLU PRO TYR SEQRES 16 A 312 THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO PRO GLU SEQRES 17 A 312 TRP ILE SER ARG HIS GLN TYR HIS ALA LEU PRO ALA THR SEQRES 18 A 312 VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET VAL CYS SEQRES 19 A 312 GLY ASP ILE PRO PHE GLU ARG ASP GLN GLU ILE LEU GLU SEQRES 20 A 312 ALA GLU LEU HIS PHE PRO ALA HIS VAL SER PRO ASP CYS SEQRES 21 A 312 CYS ALA LEU ILE ARG ARG CYS LEU ALA PRO LYS PRO SER SEQRES 22 A 312 SER ARG PRO SER LEU GLU GLU ILE LEU LEU ASP PRO TRP SEQRES 23 A 312 MET GLN THR PRO ALA GLU ASP VAL PRO LEU ASN PRO SER SEQRES 24 A 312 LYS GLY GLY PRO ALA PRO LEU ALA TRP SER LEU LEU PRO SEQRES 1 B 312 SER MET LEU THR LYS PRO LEU GLN GLY PRO PRO ALA PRO SEQRES 2 B 312 PRO GLY THR PRO THR PRO PRO PRO GLY GLY LYS ASP ARG SEQRES 3 B 312 GLU ALA PHE GLU ALA GLU TYR ARG LEU GLY PRO LEU LEU SEQRES 4 B 312 GLY LYS GLY GLY PHE GLY THR VAL PHE ALA GLY HIS ARG SEQRES 5 B 312 LEU THR ASP ARG LEU GLN VAL ALA ILE LYS VAL ILE PRO SEQRES 6 B 312 ARG ASN ARG VAL LEU GLY TRP SER PRO LEU SER ASP SER SEQRES 7 B 312 VAL THR CYS PRO LEU GLU VAL ALA LEU LEU TRP LYS VAL SEQRES 8 B 312 GLY ALA GLY GLY GLY HIS PRO GLY VAL ILE ARG LEU LEU SEQRES 9 B 312 ASP TRP PHE GLU THR GLN GLU GLY PHE MET LEU VAL LEU SEQRES 10 B 312 GLU ARG PRO LEU PRO ALA GLN ASP LEU PHE ASP TYR ILE SEQRES 11 B 312 THR GLU LYS GLY PRO LEU GLY GLU GLY PRO SER ARG CYS SEQRES 12 B 312 PHE PHE GLY GLN VAL VAL ALA ALA ILE GLN HIS CYS HIS SEQRES 13 B 312 SER ARG GLY VAL VAL HIS ARG ASP ILE LYS ASP GLU ASN SEQRES 14 B 312 ILE LEU ILE ASP LEU ARG ARG GLY CYS ALA LYS LEU ILE SEQRES 15 B 312 ASP PHE GLY SER GLY ALA LEU LEU HIS ASP GLU PRO TYR SEQRES 16 B 312 THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO PRO GLU SEQRES 17 B 312 TRP ILE SER ARG HIS GLN TYR HIS ALA LEU PRO ALA THR SEQRES 18 B 312 VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET VAL CYS SEQRES 19 B 312 GLY ASP ILE PRO PHE GLU ARG ASP GLN GLU ILE LEU GLU SEQRES 20 B 312 ALA GLU LEU HIS PHE PRO ALA HIS VAL SER PRO ASP CYS SEQRES 21 B 312 CYS ALA LEU ILE ARG ARG CYS LEU ALA PRO LYS PRO SER SEQRES 22 B 312 SER ARG PRO SER LEU GLU GLU ILE LEU LEU ASP PRO TRP SEQRES 23 B 312 MET GLN THR PRO ALA GLU ASP VAL PRO LEU ASN PRO SER SEQRES 24 B 312 LYS GLY GLY PRO ALA PRO LEU ALA TRP SER LEU LEU PRO HET HB1 A1289 30 HET HB1 B1288 30 HETNAM HB1 RUTHENIUM-PYRIDOCARBAZOLE-1 FORMUL 3 HB1 2(C23 H13 N3 O3 RU) HELIX 1 1 PRO A 81 ALA A 92 1 12 HELIX 2 2 LEU A 125 GLY A 133 1 9 HELIX 3 3 GLY A 136 GLY A 158 1 23 HELIX 4 4 LYS A 165 GLU A 167 5 3 HELIX 5 5 PRO A 205 HIS A 212 1 8 HELIX 6 6 HIS A 215 GLY A 234 1 20 HELIX 7 7 ARG A 240 ALA A 247 1 8 HELIX 8 8 SER A 256 LEU A 267 1 12 HELIX 9 9 SER A 276 ASP A 283 1 8 HELIX 10 10 ASP B 24 ALA B 30 1 7 HELIX 11 11 PRO B 81 ALA B 92 1 12 HELIX 12 12 LEU B 125 GLY B 133 1 9 HELIX 13 13 GLY B 136 GLY B 158 1 23 HELIX 14 14 LYS B 165 GLU B 167 5 3 HELIX 15 15 THR B 200 SER B 204 5 5 HELIX 16 16 PRO B 205 HIS B 212 1 8 HELIX 17 17 HIS B 215 GLY B 234 1 20 HELIX 18 18 ARG B 240 ALA B 247 1 8 HELIX 19 19 SER B 256 LEU B 267 1 12 HELIX 20 20 SER B 276 ASP B 283 1 8 SHEET 1 AA 5 ARG A 33 GLY A 41 0 SHEET 2 AA 5 GLY A 44 HIS A 50 -1 O GLY A 44 N GLY A 41 SHEET 3 AA 5 GLN A 57 VAL A 62 -1 O VAL A 58 N GLY A 49 SHEET 4 AA 5 MET A 113 GLU A 117 -1 O LEU A 114 N LYS A 61 SHEET 5 AA 5 LEU A 102 TRP A 105 -1 N LEU A 103 O VAL A 115 SHEET 1 AB 3 ALA A 122 ASP A 124 0 SHEET 2 AB 3 ILE A 169 ASP A 172 -1 O ILE A 171 N GLN A 123 SHEET 3 AB 3 CYS A 177 LEU A 180 -1 O CYS A 177 N ASP A 172 SHEET 1 AC 2 VAL A 159 VAL A 160 0 SHEET 2 AC 2 ALA A 187 LEU A 188 -1 O ALA A 187 N VAL A 160 SHEET 1 BA 5 TYR B 32 GLY B 41 0 SHEET 2 BA 5 GLY B 44 ARG B 51 -1 O GLY B 44 N GLY B 41 SHEET 3 BA 5 LEU B 56 VAL B 62 -1 O LEU B 56 N ARG B 51 SHEET 4 BA 5 MET B 113 GLU B 117 -1 O LEU B 114 N LYS B 61 SHEET 5 BA 5 LEU B 102 PHE B 106 -1 N LEU B 103 O VAL B 115 SHEET 1 BB 3 ALA B 122 ASP B 124 0 SHEET 2 BB 3 ILE B 169 ASP B 172 -1 O ILE B 171 N GLN B 123 SHEET 3 BB 3 CYS B 177 LEU B 180 -1 O CYS B 177 N ASP B 172 SHEET 1 BC 2 VAL B 159 VAL B 160 0 SHEET 2 BC 2 ALA B 187 LEU B 188 -1 O ALA B 187 N VAL B 160 CISPEP 1 LEU A 120 PRO A 121 0 1.07 CISPEP 2 LEU B 120 PRO B 121 0 -2.43 SITE 1 AC1 12 GLY A 39 PHE A 43 VAL A 46 ILE A 100 SITE 2 AC1 12 LEU A 116 GLU A 117 ARG A 118 ASP A 124 SITE 3 AC1 12 GLU A 167 LEU A 170 ILE A 181 ASP A 182 SITE 1 AC2 10 GLY B 39 PHE B 43 VAL B 46 LEU B 116 SITE 2 AC2 10 GLU B 117 ARG B 118 GLU B 167 LEU B 170 SITE 3 AC2 10 ILE B 181 ASP B 182 CRYST1 153.070 153.070 78.600 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006533 0.003772 0.000000 0.00000 SCALE2 0.000000 0.007544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012723 0.00000 MTRIX1 1 0.949870 0.282640 -0.133630 -19.34309 1 MTRIX2 1 0.292340 -0.651490 0.700070 66.53331 1 MTRIX3 1 0.110810 -0.704040 -0.701460 49.99966 1