PDB Short entry for 2IYV HEADER TRANSFERASE 22-JUL-06 2IYV TITLE SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH ADP, TITLE 2 OPEN LID (CONF. B) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIKIMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SK; COMPND 5 EC: 2.7.1.71; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, AROMATIC AMINO ACID BIOSYNTHESIS, P-LOOP KINASE, METAL- KEYWDS 2 BINDING, SHIKIMATE KINASE, SHIKIMATE PATHWAY, NUCLEOTIDE- BINDING, KEYWDS 3 AMINO-ACID BIOSYNTHESIS, KINASE, MAGNESIUM, ATP-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.D.HARTMANN,G.P.BOURENKOV,A.OBERSCHALL,N.STRIZHOV,H.D.BARTUNIK REVDAT 4 13-DEC-23 2IYV 1 REMARK REVDAT 3 24-FEB-09 2IYV 1 VERSN REVDAT 2 22-NOV-06 2IYV 1 JRNL REVDAT 1 11-OCT-06 2IYV 0 JRNL AUTH M.D.HARTMANN,G.P.BOURENKOV,A.OBERSCHALL,N.STRIZHOV, JRNL AUTH 2 H.D.BARTUNIK JRNL TITL MECHANISM OF PHOSPHORYL TRANSFER CATALYZED BY SHIKIMATE JRNL TITL 2 KINASE FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.MOL.BIOL. V. 364 411 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 17020768 JRNL DOI 10.1016/J.JMB.2006.09.001 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 33221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1756 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2360 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1334 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.98000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.154 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1478 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1486 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2004 ; 1.517 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3414 ; 0.845 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 5.055 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;28.377 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 272 ;13.489 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;15.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 242 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1581 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 318 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 287 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1494 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 711 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 936 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.138 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 85 ; 0.244 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.077 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1170 ; 4.098 ;12.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1466 ; 4.525 ;16.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 620 ; 5.070 ;24.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 538 ; 6.689 ;36.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 19.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.510 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2IYQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) PEG 3000, 100MM MES PH 6.5, REMARK 280 PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.09650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 465 HIS A 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM REMARK 900 MYCOBACTERIUMTUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT REMARK 900 1.8ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1L4Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM REMARK 900 MYCOBACTERIUMTUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 REMARK 900 ANGSTROMRESOLUTION REMARK 900 RELATED ID: 1U8A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE IN REMARK 900 COMPLEX WITH SHIKIMATE AND ADP AT 2.15 ANGSTROMRESOLUTION REMARK 900 RELATED ID: 1ZYU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE IN REMARK 900 COMPLEX WITH SHIKIMATE AND AMPPCP AT 2.85ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2G1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE AT REMARK 900 2.0 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2G1K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS SHIKIMATEKINASE IN REMARK 900 COMPLEX WITH SHIKIMATE AT 1.75 ANGSTROMRESOLUTION REMARK 900 RELATED ID: 2IYQ RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE AND ADP REMARK 900 RELATED ID: 2IYR RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE REMARK 900 RELATED ID: 2IYS RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE, OPEN LID (CONF . A) REMARK 900 RELATED ID: 2IYT RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN UNLIGANDED REMARK 900 STATE, OPEN LID (CONF. A) REMARK 900 RELATED ID: 2IYU RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 ADP, OPEN LID (CONF. A) REMARK 900 RELATED ID: 2IYW RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 MGATP, OPEN LID (CONF. B ) REMARK 900 RELATED ID: 2IYX RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE AND SO4 REMARK 900 RELATED ID: 2IYY RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE-3-PHOSPHATE AND SO4 REMARK 900 RELATED ID: 2IYZ RELATED DB: PDB REMARK 900 SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH REMARK 900 SHIKIMATE-3-PHOSPHATE AND ADP REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINAL HIS-TAG DBREF 2IYV A 1 176 UNP P0A4Z2 AROK_MYCTU 1 176 DBREF 2IYV A 177 184 PDB 2IYV 2IYV 177 184 SEQRES 1 A 184 MET ALA PRO LYS ALA VAL LEU VAL GLY LEU PRO GLY SER SEQRES 2 A 184 GLY LYS SER THR ILE GLY ARG ARG LEU ALA LYS ALA LEU SEQRES 3 A 184 GLY VAL GLY LEU LEU ASP THR ASP VAL ALA ILE GLU GLN SEQRES 4 A 184 ARG THR GLY ARG SER ILE ALA ASP ILE PHE ALA THR ASP SEQRES 5 A 184 GLY GLU GLN GLU PHE ARG ARG ILE GLU GLU ASP VAL VAL SEQRES 6 A 184 ARG ALA ALA LEU ALA ASP HIS ASP GLY VAL LEU SER LEU SEQRES 7 A 184 GLY GLY GLY ALA VAL THR SER PRO GLY VAL ARG ALA ALA SEQRES 8 A 184 LEU ALA GLY HIS THR VAL VAL TYR LEU GLU ILE SER ALA SEQRES 9 A 184 ALA GLU GLY VAL ARG ARG THR GLY GLY ASN THR VAL ARG SEQRES 10 A 184 PRO LEU LEU ALA GLY PRO ASP ARG ALA GLU LYS TYR ARG SEQRES 11 A 184 ALA LEU MET ALA LYS ARG ALA PRO LEU TYR ARG ARG VAL SEQRES 12 A 184 ALA THR MET ARG VAL ASP THR ASN ARG ARG ASN PRO GLY SEQRES 13 A 184 ALA VAL VAL ARG HIS ILE LEU SER ARG LEU GLN VAL PRO SEQRES 14 A 184 SER PRO SER GLU ALA ALA THR LEU GLU HIS HIS HIS HIS SEQRES 15 A 184 HIS HIS HET ADP A 201 27 HET CL A 202 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 CL CL 1- FORMUL 4 HOH *185(H2 O) HELIX 1 1 GLY A 14 GLY A 27 1 14 HELIX 2 2 THR A 33 GLY A 42 1 10 HELIX 3 3 SER A 44 GLY A 53 1 10 HELIX 4 4 GLY A 53 HIS A 72 1 20 HELIX 5 5 GLY A 81 THR A 84 5 4 HELIX 6 6 SER A 85 ALA A 93 1 9 HELIX 7 7 SER A 103 THR A 111 1 9 HELIX 8 8 ASP A 124 ALA A 144 1 21 HELIX 9 9 ASN A 154 SER A 164 1 11 HELIX 10 10 SER A 172 HIS A 179 1 8 SHEET 1 AA 5 LEU A 30 ASP A 32 0 SHEET 2 AA 5 VAL A 75 SER A 77 1 O VAL A 75 N LEU A 31 SHEET 3 AA 5 ALA A 5 VAL A 8 1 O ALA A 5 N LEU A 76 SHEET 4 AA 5 VAL A 97 GLU A 101 1 O VAL A 98 N VAL A 8 SHEET 5 AA 5 MET A 146 ASP A 149 1 O MET A 146 N TYR A 99 SITE 1 AC1 3 ARG A 153 HIS A 161 HOH A2162 SITE 1 AC2 19 LEU A 10 GLY A 12 SER A 13 GLY A 14 SITE 2 AC2 19 LYS A 15 SER A 16 THR A 17 ARG A 110 SITE 3 AC2 19 ARG A 153 PRO A 155 HOH A2006 HOH A2008 SITE 4 AC2 19 HOH A2148 HOH A2178 HOH A2179 HOH A2180 SITE 5 AC2 19 HOH A2181 HOH A2182 HOH A2184 CRYST1 38.618 44.193 51.289 90.00 109.13 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025895 0.000000 0.008982 0.00000 SCALE2 0.000000 0.022628 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020637 0.00000