PDB Short entry for 2IZ3 HEADER INHIBITOR 24-JUL-06 2IZ3 TITLE SOLUTION STRUCTURE OF HUMAN BETA-MICROSEMINOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-MICROSEMINOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-114; COMPND 5 SYNONYM: PROSTATE SECRETED SEMINAL PLASMA PROTEIN, PROSTATE SECRETORY COMPND 6 PROTEIN PSP94, PSP-94, IGBF, PN44, IMMUNOGLOBULIN-BINDING FACTOR, COMPND 7 SEMINAL PLASMA BETA-INHIBIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PROSTATE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: NOVABLUE; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30 XA/LIC KEYWDS POLYMORPHISM, ALTERNATIVE SPLICING, INHIBITOR EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.GHASRIANI,K.TEILUM,Y.JOHNSSON,P.FERNLUND,T.DRAKENBERG REVDAT 4 14-JUN-23 2IZ3 1 REMARK REVDAT 3 15-JAN-20 2IZ3 1 REMARK REVDAT 2 24-FEB-09 2IZ3 1 VERSN REVDAT 1 24-OCT-06 2IZ3 0 JRNL AUTH H.GHASRIANI,K.TEILUM,Y.JOHNSSON,P.FERNLUND,T.DRAKENBERG JRNL TITL SOLUTION STRUCTURE OF HUMAN AND PORCINE JRNL TITL 2 BETA-MICROSEMINOPROTEIN JRNL REF J.MOL.BIOL. V. 362 502 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16930619 JRNL DOI 10.1016/J.JMB.2006.07.029 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2IZ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029486. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH REMARK 210 METHOD USED : ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOW ENERGY AND NO VIOLATIONS > REMARK 210 0.5 A REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NOE-RESTRAINTS WERE COLLECTED FROM 3D-15N-EDITED NOESY, 3D REMARK 210 -1EC-EDITED NOESY AND 2D NOESY SPECTRA REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 34.87 -75.61 REMARK 500 1 SER A 14 -47.00 -139.09 REMARK 500 1 ARG A 16 -8.94 65.43 REMARK 500 1 LYS A 17 -86.00 -94.42 REMARK 500 1 CYS A 18 92.60 -163.41 REMARK 500 1 CYS A 37 22.29 172.74 REMARK 500 1 CYS A 73 64.88 36.23 REMARK 500 2 GLU A 8 72.65 -102.15 REMARK 500 2 SER A 14 -113.34 43.28 REMARK 500 2 CYS A 18 62.56 37.15 REMARK 500 2 ASN A 29 -4.27 78.12 REMARK 500 2 ASN A 36 -125.90 -107.26 REMARK 500 2 THR A 45 -40.40 -140.95 REMARK 500 2 CYS A 73 67.79 37.08 REMARK 500 3 CYS A 2 100.19 41.94 REMARK 500 3 ASN A 7 62.32 -59.42 REMARK 500 3 GLU A 8 -30.39 -161.06 REMARK 500 3 SER A 14 -60.29 -165.54 REMARK 500 3 ARG A 16 85.91 56.65 REMARK 500 3 LYS A 17 14.90 -162.16 REMARK 500 3 CYS A 18 82.62 39.72 REMARK 500 3 PRO A 27 178.61 -53.04 REMARK 500 3 ASP A 35 -9.61 67.28 REMARK 500 3 ASN A 36 -38.46 89.34 REMARK 500 3 THR A 45 36.18 -140.39 REMARK 500 3 ASN A 63 49.18 -103.64 REMARK 500 3 CYS A 64 141.36 163.29 REMARK 500 3 CYS A 73 60.96 37.09 REMARK 500 3 PRO A 83 -8.53 -55.25 REMARK 500 4 SER A 14 -20.69 -147.77 REMARK 500 4 ARG A 16 -165.92 51.07 REMARK 500 4 LYS A 17 -173.61 62.92 REMARK 500 4 CYS A 18 48.47 -102.42 REMARK 500 4 PRO A 27 -177.19 -48.10 REMARK 500 4 ASP A 35 -82.46 53.99 REMARK 500 4 ASN A 36 117.19 173.25 REMARK 500 4 THR A 45 31.06 -140.38 REMARK 500 4 LEU A 52 -38.58 58.53 REMARK 500 4 CYS A 73 64.07 38.92 REMARK 500 5 CYS A 2 96.82 38.08 REMARK 500 5 ASN A 7 -26.46 -38.24 REMARK 500 5 ASP A 13 102.14 53.87 REMARK 500 5 SER A 14 -59.03 -154.33 REMARK 500 5 LYS A 17 -158.04 -150.74 REMARK 500 5 CYS A 18 43.68 -99.13 REMARK 500 5 ASN A 63 47.92 -104.35 REMARK 500 5 CYS A 64 143.10 162.16 REMARK 500 5 CYS A 73 66.32 37.20 REMARK 500 6 ASN A 7 -27.41 -37.93 REMARK 500 6 PRO A 11 87.95 -42.54 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IZ4 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN BETA- MICROSEMINOPROTEIN REMARK 900 RELATED ID: 15037 RELATED DB: BMRB DBREF 2IZ3 A -2 0 PDB 2IZ3 2IZ3 -2 0 DBREF 2IZ3 A 1 94 UNP P08118 MSMB_HUMAN 21 114 SEQRES 1 A 97 GLY GLY GLY SER CYS TYR PHE ILE PRO ASN GLU GLY VAL SEQRES 2 A 97 PRO GLY ASP SER THR ARG LYS CYS MET ASP LEU LYS GLY SEQRES 3 A 97 ASN LYS HIS PRO ILE ASN SER GLU TRP GLN THR ASP ASN SEQRES 4 A 97 CYS GLU THR CYS THR CYS TYR GLU THR GLU ILE SER CYS SEQRES 5 A 97 CYS THR LEU VAL SER THR PRO VAL GLY TYR ASP LYS ASP SEQRES 6 A 97 ASN CYS GLN ARG ILE PHE LYS LYS GLU ASP CYS LYS TYR SEQRES 7 A 97 ILE VAL VAL GLU LYS LYS ASP PRO LYS LYS THR CYS SER SEQRES 8 A 97 VAL SER GLU TRP ILE ILE HELIX 1 1 LYS A 70 CYS A 73 5 4 SHEET 1 AA 4 CYS A 2 PRO A 6 0 SHEET 2 AA 4 GLU A 46 THR A 51 -1 O ILE A 47 N ILE A 5 SHEET 3 AA 4 GLU A 38 TYR A 43 -1 O THR A 39 N CYS A 50 SHEET 4 AA 4 GLU A 31 THR A 34 -1 O TRP A 32 N CYS A 40 SHEET 1 AB 2 THR A 55 VAL A 57 0 SHEET 2 AB 2 GLU A 91 ILE A 93 -1 O GLU A 91 N VAL A 57 SHEET 1 AC 2 CYS A 64 LYS A 69 0 SHEET 2 AC 2 LYS A 74 GLU A 79 -1 O LYS A 74 N LYS A 69 SSBOND 1 CYS A 2 CYS A 50 1555 1555 2.02 SSBOND 2 CYS A 18 CYS A 42 1555 1555 2.02 SSBOND 3 CYS A 37 CYS A 73 1555 1555 2.02 SSBOND 4 CYS A 40 CYS A 49 1555 1555 2.03 SSBOND 5 CYS A 64 CYS A 87 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000