PDB Short entry for 2IZS HEADER TRANSFERASE 26-JUL-06 2IZS TITLE STRUCTURE OF CASEIN KINASE GAMMA 3 IN COMPLEX WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE I ISOFORM GAMMA-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 35-362; COMPND 5 SYNONYM: CKI-GAMMA 3, CASEIN KINASE 1 GAMMA 3; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLIC-SGC KEYWDS TRANSFERASE, NUCLEOTIDE-BINDING, WNT SIGNALING PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR G.BUNKOCZI,E.SALAH,P.RELLOS,S.DAS,O.FEDOROV,P.SAVITSKY, AUTHOR 2 J.E.DEBRECZENI,O.GILEADI,M.SUNDSTROM,A.EDWARDS,C.ARROWSMITH, AUTHOR 3 J.WEIGELT,F.VON DELFT,S.KNAPP REVDAT 6 13-DEC-23 2IZS 1 LINK REVDAT 5 04-APR-18 2IZS 1 REMARK REVDAT 4 24-JAN-18 2IZS 1 AUTHOR JRNL REVDAT 3 13-JUL-11 2IZS 1 VERSN REVDAT 2 24-FEB-09 2IZS 1 VERSN REVDAT 1 01-AUG-06 2IZS 0 JRNL AUTH G.BUNKOCZI,E.SALAH,P.RELLOS,S.DAS,O.FEDOROV,P.SAVITSKY, JRNL AUTH 2 J.E.DEBRECZENI,O.GILEADI,M.SUNDSTROM,A.EDWARDS,C.ARROWSMITH, JRNL AUTH 3 J.WEIGELT,F.VON DELFT,S.KNAPP JRNL TITL INHIBITOR BINDING BY CASEIN KINASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 28061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1501 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 238 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.145 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.907 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2587 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1837 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3493 ; 1.517 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4436 ; 0.940 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 6.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;32.299 ;22.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;13.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2832 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 555 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 596 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2060 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1273 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1362 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 221 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.255 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1647 ; 3.976 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2449 ; 5.024 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1203 ; 7.365 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1044 ; 8.857 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 107 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1435 -11.6198 28.3380 REMARK 3 T TENSOR REMARK 3 T11: -0.0824 T22: 0.0229 REMARK 3 T33: -0.0297 T12: -0.0264 REMARK 3 T13: -0.0064 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.6341 L22: 1.9876 REMARK 3 L33: 1.3339 L12: -0.8882 REMARK 3 L13: 1.1601 L23: -1.0210 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.1222 S13: 0.0173 REMARK 3 S21: -0.0329 S22: -0.0901 S23: -0.0937 REMARK 3 S31: -0.0135 S32: 0.1739 S33: 0.0958 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 108 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1471 -5.5449 15.6803 REMARK 3 T TENSOR REMARK 3 T11: -0.0665 T22: -0.0307 REMARK 3 T33: -0.0639 T12: -0.0135 REMARK 3 T13: -0.0010 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8823 L22: 0.6040 REMARK 3 L33: 0.9318 L12: 0.1306 REMARK 3 L13: -0.0372 L23: -0.0520 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.0453 S13: -0.0562 REMARK 3 S21: -0.0708 S22: -0.0290 S23: 0.0269 REMARK 3 S31: -0.0345 S32: -0.0334 S33: 0.0394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC HR MULTILAYER OPTICS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 32.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG10K, 0.20 M MGCL2, 0.10 M TRIS REMARK 280 PH=7.0, PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.36300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 146.72600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 146.72600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.36300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 CASEIN KINASES ARE OPERATIONALLY DEFINED BY THEIR REMARK 400 PREFERENTIAL UTILIZATION OF ACIDIC PROTEINS SUCH AS CASEINS AS REMARK 400 SUBSTRATES. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 33 REMARK 465 MET A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 334 REMARK 465 GLY A 335 REMARK 465 ALA A 336 REMARK 465 VAL A 337 REMARK 465 GLN A 338 REMARK 465 GLN A 339 REMARK 465 ASP A 340 REMARK 465 PRO A 341 REMARK 465 ALA A 342 REMARK 465 LEU A 343 REMARK 465 SER A 344 REMARK 465 SER A 345 REMARK 465 ASN A 346 REMARK 465 ARG A 347 REMARK 465 GLU A 348 REMARK 465 ALA A 349 REMARK 465 HIS A 350 REMARK 465 GLN A 351 REMARK 465 HIS A 352 REMARK 465 ARG A 353 REMARK 465 ASP A 354 REMARK 465 LYS A 355 REMARK 465 MET A 356 REMARK 465 GLN A 357 REMARK 465 GLN A 358 REMARK 465 SER A 359 REMARK 465 LYS A 360 REMARK 465 ASN A 361 REMARK 465 GLN A 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 ARG A 79 CD NE CZ NH1 NH2 REMARK 470 ARG A 88 CD NE CZ NH1 NH2 REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 253 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 42 -1.28 -145.94 REMARK 500 ASN A 53 -69.98 60.96 REMARK 500 PHE A 54 30.23 78.48 REMARK 500 LYS A 77 5.84 -69.72 REMARK 500 ASP A 162 39.29 -140.07 REMARK 500 ASP A 185 78.66 68.70 REMARK 500 GLU A 205 -163.77 -128.51 REMARK 500 THR A 210 -47.14 -139.93 REMARK 500 ASN A 279 -3.67 80.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1336 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 185 OD2 REMARK 620 2 HOH A2107 O 121.6 REMARK 620 3 HOH A2114 O 82.1 119.5 REMARK 620 4 HOH A2122 O 75.8 105.0 135.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1335 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2032 O REMARK 620 2 HOH A2052 O 171.8 REMARK 620 3 HOH A2053 O 100.3 85.9 REMARK 620 4 HOH A2071 O 81.1 104.9 86.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BRQ A1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO A1339 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CHL RELATED DB: PDB REMARK 900 STRUCTURE OF CASEIN KINASE 1 GAMMA 3 REMARK 900 RELATED ID: 2IZR RELATED DB: PDB REMARK 900 STRUCTURE OF CASEIN KINASE GAMMA 3 IN COMPLEX WITH INHIBITOR REMARK 900 RELATED ID: 2IZT RELATED DB: PDB REMARK 900 STRUCTURE OF CASEIN KINASE GAMMA 3 IN COMPLEX WITH INHIBITOR REMARK 900 RELATED ID: 2IZU RELATED DB: PDB REMARK 900 STRUCTURE OF CASEIN KINASE GAMMA 3 IN COMPLEX WITH INHIBITOR DBREF 2IZS A 35 362 UNP Q9Y6M4 KC1G3_HUMAN 35 362 SEQADV 2IZS SER A 33 UNP Q9Y6M4 EXPRESSION TAG SEQADV 2IZS MET A 34 UNP Q9Y6M4 EXPRESSION TAG SEQADV 2IZS ALA A 187 UNP Q9Y6M4 GLY 187 CONFLICT SEQRES 1 A 330 SER MET GLY VAL LEU MET VAL GLY PRO ASN PHE ARG VAL SEQRES 2 A 330 GLY LYS LYS ILE GLY CYS GLY ASN PHE GLY GLU LEU ARG SEQRES 3 A 330 LEU GLY LYS ASN LEU TYR THR ASN GLU TYR VAL ALA ILE SEQRES 4 A 330 LYS LEU GLU PRO MET LYS SER ARG ALA PRO GLN LEU HIS SEQRES 5 A 330 LEU GLU TYR ARG PHE TYR LYS GLN LEU GLY SER GLY ASP SEQRES 6 A 330 GLY ILE PRO GLN VAL TYR TYR PHE GLY PRO CYS GLY LYS SEQRES 7 A 330 TYR ASN ALA MET VAL LEU GLU LEU LEU GLY PRO SER LEU SEQRES 8 A 330 GLU ASP LEU PHE ASP LEU CYS ASP ARG THR PHE SER LEU SEQRES 9 A 330 LYS THR VAL LEU MET ILE ALA ILE GLN LEU ILE SER ARG SEQRES 10 A 330 MET GLU TYR VAL HIS SER LYS ASN LEU ILE TYR ARG ASP SEQRES 11 A 330 VAL LYS PRO GLU ASN PHE LEU ILE GLY ARG PRO GLY ASN SEQRES 12 A 330 LYS THR GLN GLN VAL ILE HIS ILE ILE ASP PHE ALA LEU SEQRES 13 A 330 ALA LYS GLU TYR ILE ASP PRO GLU THR LYS LYS HIS ILE SEQRES 14 A 330 PRO TYR ARG GLU HIS LYS SER LEU THR GLY THR ALA ARG SEQRES 15 A 330 TYR MET SER ILE ASN THR HIS LEU GLY LYS GLU GLN SER SEQRES 16 A 330 ARG ARG ASP ASP LEU GLU ALA LEU GLY HIS MET PHE MET SEQRES 17 A 330 TYR PHE LEU ARG GLY SER LEU PRO TRP GLN GLY LEU LYS SEQRES 18 A 330 ALA ASP THR LEU LYS GLU ARG TYR GLN LYS ILE GLY ASP SEQRES 19 A 330 THR LYS ARG ALA THR PRO ILE GLU VAL LEU CYS GLU ASN SEQRES 20 A 330 PHE PRO GLU MET ALA THR TYR LEU ARG TYR VAL ARG ARG SEQRES 21 A 330 LEU ASP PHE PHE GLU LYS PRO ASP TYR ASP TYR LEU ARG SEQRES 22 A 330 LYS LEU PHE THR ASP LEU PHE ASP ARG LYS GLY TYR MET SEQRES 23 A 330 PHE ASP TYR GLU TYR ASP TRP ILE GLY LYS GLN LEU PRO SEQRES 24 A 330 THR PRO VAL GLY ALA VAL GLN GLN ASP PRO ALA LEU SER SEQRES 25 A 330 SER ASN ARG GLU ALA HIS GLN HIS ARG ASP LYS MET GLN SEQRES 26 A 330 GLN SER LYS ASN GLN HET BRQ A1334 23 HET MG A1335 1 HET MG A1336 1 HET CL A1337 1 HET CL A1338 1 HET PGO A1339 5 HETNAM BRQ {[4-AMINO-2-(3-CHLOROANILINO)-1,3-THIAZOL-5-YL](4- HETNAM 2 BRQ FLUOROPHENYL)METHANONE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM PGO S-1,2-PROPANEDIOL FORMUL 2 BRQ C16 H12 CL F N3 O S 1+ FORMUL 3 MG 2(MG 2+) FORMUL 5 CL 2(CL 1-) FORMUL 7 PGO C3 H8 O2 FORMUL 8 HOH *238(H2 O) HELIX 1 1 GLN A 82 GLY A 94 1 13 HELIX 2 2 SER A 122 CYS A 130 1 9 HELIX 3 3 SER A 135 LYS A 156 1 22 HELIX 4 4 LYS A 164 GLU A 166 5 3 HELIX 5 5 ARG A 172 LYS A 176 5 5 HELIX 6 6 SER A 217 LEU A 222 1 6 HELIX 7 7 SER A 227 GLY A 245 1 19 HELIX 8 8 THR A 256 THR A 271 1 16 HELIX 9 9 PRO A 272 CYS A 277 1 6 HELIX 10 10 PHE A 280 LEU A 293 1 14 HELIX 11 11 ASP A 300 LYS A 315 1 16 SHEET 1 AA 6 MET A 38 VAL A 39 0 SHEET 2 AA 6 PHE A 43 LYS A 48 -1 O PHE A 43 N VAL A 39 SHEET 3 AA 6 LEU A 57 ASN A 62 -1 O LEU A 59 N GLY A 46 SHEET 4 AA 6 GLU A 67 PRO A 75 -1 O GLU A 67 N ASN A 62 SHEET 5 AA 6 TYR A 111 GLU A 117 -1 O ASN A 112 N GLU A 74 SHEET 6 AA 6 VAL A 102 CYS A 108 -1 N TYR A 103 O VAL A 115 SHEET 1 AB 2 LEU A 158 ILE A 159 0 SHEET 2 AB 2 LYS A 190 GLU A 191 -1 O LYS A 190 N ILE A 159 SHEET 1 AC 2 PHE A 168 ILE A 170 0 SHEET 2 AC 2 ILE A 181 ILE A 183 -1 O HIS A 182 N LEU A 169 LINK OD2 ASP A 185 MG MG A1336 1555 1555 2.10 LINK MG MG A1335 O HOH A2032 1555 1555 2.38 LINK MG MG A1335 O HOH A2052 1555 1555 2.20 LINK MG MG A1335 O HOH A2053 1555 1555 2.14 LINK MG MG A1335 O HOH A2071 1555 1555 2.15 LINK MG MG A1336 O HOH A2107 1555 1555 1.94 LINK MG MG A1336 O HOH A2114 1555 1555 2.00 LINK MG MG A1336 O HOH A2122 1555 1555 2.36 CISPEP 1 THR A 332 PRO A 333 0 -12.63 SITE 1 AC1 5 GLN A 101 HOH A2032 HOH A2052 HOH A2053 SITE 2 AC1 5 HOH A2071 SITE 1 AC2 5 ASP A 162 ASP A 185 HOH A2107 HOH A2114 SITE 2 AC2 5 HOH A2122 SITE 1 AC3 3 LYS A 137 TYR A 317 MET A 318 SITE 1 AC4 2 LYS A 61 ARG A 149 SITE 1 AC5 15 ILE A 49 ASN A 53 LEU A 57 LYS A 72 SITE 2 AC5 15 LEU A 116 GLU A 117 LEU A 118 LEU A 119 SITE 3 AC5 15 GLY A 120 PRO A 121 ILE A 184 PRO A 331 SITE 4 AC5 15 THR A 332 PRO A 333 HOH A2237 SITE 1 AC6 5 GLY A 50 GLY A 120 SER A 122 ASP A 125 SITE 2 AC6 5 LEU A 169 CRYST1 56.029 56.029 220.089 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017848 0.010304 0.000000 0.00000 SCALE2 0.000000 0.020609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004544 0.00000