PDB Short entry for 2IZV HEADER TRANSCRIPTION 26-JUL-06 2IZV TITLE CRYSTAL STRUCTURE OF SOCS-4 IN COMPLEX WITH ELONGIN-B AND ELONGIN-C AT TITLE 2 2.55A RESOLUTION CAVEAT 2IZV ASN A 267 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPPRESSOR OF CYTOKINE SIGNALING 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 274-437; COMPND 5 SYNONYM: SOCS-4 ELONGIN B, C COMPLEX, SOCS-4, SOCS-7, SUPPRESSOR OF COMPND 6 CYTOKINE SIGNALING 7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: RNA POLYMERASE II TRANSCRIPTION FACTOR SIII SUBUNIT B, SIII COMPND 12 P18, ELONGIN B, ELOB, ELONGIN 18 KDA SUBUNIT; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1; COMPND 16 CHAIN: C; COMPND 17 FRAGMENT: RESIDUES 17-112; COMPND 18 SYNONYM: RNA POLYMERASE II TRANSCRIPTION FACTOR SIII SUBUNIT C, SIII COMPND 19 P15, ELONGIN-C, ELOC, ELONGIN 15 KDA SUBUNIT; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P11; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: P11; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 23 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 24 EXPRESSION_SYSTEM_VECTOR: P11 KEYWDS SIGNAL TRANSDUCTION INHIBITOR, GROWTH REGULATION, SIGNAL KEYWDS 2 TRANSDUCTION, SH2 DOMAIN, TRANSCRIPTION, NUCLEAR PROTEIN, UBL KEYWDS 3 CONJUGATION PATHWAY, TRANSCRIPTION REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,A.BULLOCK,E.PAPAGRIGORIOU,A.TURNBULL,A.C.W.PIKE, AUTHOR 2 F.GORREC,F.VON DELFT,M.SUNDSTROM,C.ARROWSMITH,J.WEIGELT,A.EDWARDS, AUTHOR 3 S.KNAPP REVDAT 7 13-DEC-23 2IZV 1 LINK REVDAT 6 08-MAY-19 2IZV 1 REMARK REVDAT 5 28-FEB-18 2IZV 1 SOURCE JRNL REVDAT 4 24-JAN-18 2IZV 1 AUTHOR REVDAT 3 13-JUL-11 2IZV 1 VERSN REVDAT 2 24-FEB-09 2IZV 1 VERSN REVDAT 1 02-AUG-06 2IZV 0 JRNL AUTH A.N.BULLOCK,M.C.RODRIGUEZ,J.E.DEBRECZENI,Z.SONGYANG,S.KNAPP JRNL TITL STRUCTURE OF THE SOCS4-ELONGINB/C COMPLEX REVEALS A DISTINCT JRNL TITL 2 SOCS BOX INTERFACE AND THE MOLECULAR BASIS FOR JRNL TITL 3 SOCS-DEPENDENT EGFR DEGRADATION. JRNL REF STRUCTURE V. 15 1493 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17997974 JRNL DOI 10.1016/J.STR.2007.09.016 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 18723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1358 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : 1.83000 REMARK 3 B12 (A**2) : -0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2882 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1966 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3910 ; 1.438 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4791 ; 1.006 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 6.553 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;33.785 ;23.465 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;16.155 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.092 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 436 ; 0.144 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3158 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 596 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 535 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1935 ; 0.190 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1397 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1487 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.162 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 34 ; 0.217 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1774 ; 3.518 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2881 ; 5.295 ; 7.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 7.002 ; 9.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1029 ; 8.759 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 267 A 383 REMARK 3 RESIDUE RANGE : A 422 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5008 -16.1138 61.5944 REMARK 3 T TENSOR REMARK 3 T11: -0.0127 T22: -0.0086 REMARK 3 T33: -0.0535 T12: 0.0407 REMARK 3 T13: -0.0385 T23: 0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.9031 L22: 2.6757 REMARK 3 L33: 1.0306 L12: 0.8146 REMARK 3 L13: 0.1039 L23: 0.0303 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.2001 S13: -0.1057 REMARK 3 S21: 0.2938 S22: -0.0036 S23: -0.0199 REMARK 3 S31: 0.0146 S32: -0.0199 S33: -0.0358 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 384 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2349 -6.5275 47.1676 REMARK 3 T TENSOR REMARK 3 T11: -0.0457 T22: -0.0571 REMARK 3 T33: 0.0138 T12: 0.0241 REMARK 3 T13: -0.0087 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 0.5906 L22: 3.7599 REMARK 3 L33: 1.6225 L12: -0.2030 REMARK 3 L13: -0.9701 L23: 0.6611 REMARK 3 S TENSOR REMARK 3 S11: 0.1165 S12: -0.1975 S13: 0.1240 REMARK 3 S21: -0.2094 S22: 0.0110 S23: -0.3413 REMARK 3 S31: -0.1042 S32: 0.0249 S33: -0.1274 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): 35.1863 -29.7591 27.7502 REMARK 3 T TENSOR REMARK 3 T11: -0.0854 T22: -0.0974 REMARK 3 T33: -0.0403 T12: 0.0275 REMARK 3 T13: 0.0156 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.3090 L22: 3.0440 REMARK 3 L33: 1.8646 L12: -1.6996 REMARK 3 L13: -1.6951 L23: 1.9404 REMARK 3 S TENSOR REMARK 3 S11: 0.0512 S12: 0.1284 S13: -0.1869 REMARK 3 S21: -0.2321 S22: -0.1623 S23: 0.0169 REMARK 3 S31: -0.0674 S32: -0.1062 S33: 0.1111 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 112 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6390 -16.8591 32.2935 REMARK 3 T TENSOR REMARK 3 T11: -0.0323 T22: -0.1156 REMARK 3 T33: -0.0492 T12: 0.0621 REMARK 3 T13: -0.0006 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 2.5625 L22: 1.8708 REMARK 3 L33: 2.2259 L12: -0.4579 REMARK 3 L13: -0.2497 L23: 0.1585 REMARK 3 S TENSOR REMARK 3 S11: 0.1076 S12: 0.0854 S13: 0.1179 REMARK 3 S21: -0.3384 S22: -0.1158 S23: 0.0085 REMARK 3 S31: -0.0863 S32: -0.0893 S33: 0.0082 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2IZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-06. REMARK 100 THE DEPOSITION ID IS D_1290029506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8984 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 44.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.710 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.72 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2C9W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 150 UL SITTING DROP 2M NACL 10% PEK6K, REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 77.38500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.67825 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.63633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 77.38500 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 44.67825 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.63633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 77.38500 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 44.67825 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.63633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.35650 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 45.27267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 89.35650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 45.27267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 89.35650 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 45.27267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 GLY A 260 REMARK 465 VAL A 261 REMARK 465 ASP A 262 REMARK 465 LEU A 263 REMARK 465 GLY A 264 REMARK 465 THR A 265 REMARK 465 GLU A 266 REMARK 465 VAL A 430 REMARK 465 LEU A 431 REMARK 465 ARG A 432 REMARK 465 ILE A 433 REMARK 465 ASP A 434 REMARK 465 ALA A 435 REMARK 465 PRO A 436 REMARK 465 GLU A 437 REMARK 465 GLN B 106 REMARK 465 ASP B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 SER B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 GLU B 114 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 GLN B 118 REMARK 465 MET C 16 REMARK 465 SER C 47 REMARK 465 GLY C 48 REMARK 465 PRO C 49 REMARK 465 GLY C 50 REMARK 465 GLN C 51 REMARK 465 PHE C 52 REMARK 465 ALA C 53 REMARK 465 GLU C 54 REMARK 465 ASN C 55 REMARK 465 GLU C 56 REMARK 465 THR C 57 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 LYS A 425 CD CE NZ REMARK 470 LYS A 427 CD CE NZ REMARK 470 ARG A 429 NE CZ NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 19 CE NZ REMARK 470 GLN B 65 CD OE1 NE2 REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 LYS B 104 CE NZ REMARK 470 LYS C 43 NZ REMARK 470 ASN C 58 CG OD1 ND2 REMARK 470 ARG C 63 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 305 123.09 -37.95 REMARK 500 HIS B 10 -119.33 51.70 REMARK 500 ASP B 47 -126.76 61.23 REMARK 500 ALA B 71 68.76 -152.79 REMARK 500 ASP B 82 -121.38 69.53 REMARK 500 ASP C 111 62.20 60.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1430 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 313 O REMARK 620 2 GLN A 315 O 90.5 REMARK 620 3 TYR A 318 O 100.3 74.7 REMARK 620 4 EDO A1431 O2 80.0 162.0 91.9 REMARK 620 5 HOH A2022 O 95.5 82.2 152.0 113.7 REMARK 620 6 HOH A2023 O 172.5 94.4 75.6 93.7 90.8 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1430 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1431 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LM8 RELATED DB: PDB REMARK 900 STRUCTURE OF A HIF-1A-PVHL-ELONGINB- ELONGINC COMPLEX REMARK 900 RELATED ID: 1LQB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HYDROXYLATED HIF-1 ALPHA PEPTIDEBOUND TO THE REMARK 900 PVHL/ELONGIN-C/ ELONGIN-B COMPLEX REMARK 900 RELATED ID: 1VCB RELATED DB: PDB REMARK 900 THE VHL-ELONGINC-ELONGINB STRUCTURE REMARK 900 RELATED ID: 2C9W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOCS-2 IN COMPLEX WITH ELONGIN-B AND ELONGIN-C REMARK 900 AT 1.9A RESOLUTION DBREF 2IZV A 251 273 PDB 2IZV 2IZV 251 273 DBREF 2IZV A 274 437 UNP Q8WXH5 SOCS4_HUMAN 274 437 DBREF 2IZV B 1 118 UNP Q15370 ELOB_HUMAN 1 118 DBREF 2IZV C 16 16 PDB 2IZV 2IZV 16 16 DBREF 2IZV C 17 112 UNP Q15369 ELOC_HUMAN 17 112 SEQRES 1 A 187 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 187 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU VAL PRO SEQRES 3 A 187 ASP LEU LEU GLN ILE ASN ASN ASN PRO CYS TYR TRP GLY SEQRES 4 A 187 VAL MET ASP LYS TYR ALA ALA GLU ALA LEU LEU GLU GLY SEQRES 5 A 187 LYS PRO GLU GLY THR PHE LEU LEU ARG ASP SER ALA GLN SEQRES 6 A 187 GLU ASP TYR LEU PHE SER VAL SER PHE ARG ARG TYR SER SEQRES 7 A 187 ARG SER LEU HIS ALA ARG ILE GLU GLN TRP ASN HIS ASN SEQRES 8 A 187 PHE SER PHE ASP ALA HIS ASP PRO CYS VAL PHE HIS SER SEQRES 9 A 187 PRO ASP ILE THR GLY LEU LEU GLU HIS TYR LYS ASP PRO SEQRES 10 A 187 SER ALA CYS MET PHE PHE GLU PRO LEU LEU SER THR PRO SEQRES 11 A 187 LEU ILE ARG THR PHE PRO PHE SER LEU GLN HIS ILE CYS SEQRES 12 A 187 ARG THR VAL ILE CYS ASN CYS THR THR TYR ASP GLY ILE SEQRES 13 A 187 ASP ALA LEU PRO ILE PRO SER SER MET LYS LEU TYR LEU SEQRES 14 A 187 LYS GLU TYR HIS TYR LYS SER LYS VAL ARG VAL LEU ARG SEQRES 15 A 187 ILE ASP ALA PRO GLU SEQRES 1 B 118 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 B 118 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 B 118 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 118 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 118 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 B 118 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 118 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 B 118 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 9 B 118 PRO GLN ASP SER GLY SER SER ALA ASN GLU GLN ALA VAL SEQRES 10 B 118 GLN SEQRES 1 C 97 MET MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU SEQRES 2 C 97 PHE ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR SEQRES 3 C 97 ILE LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU SEQRES 4 C 97 ASN GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER SEQRES 5 C 97 HIS VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS SEQRES 6 C 97 VAL ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE SEQRES 7 C 97 PRO ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA SEQRES 8 C 97 ALA ASN PHE LEU ASP CYS HET NA A1430 1 HET EDO A1431 4 HET CL A1432 1 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NA NA 1+ FORMUL 5 EDO C2 H6 O2 FORMUL 6 CL CL 1- FORMUL 7 HOH *113(H2 O) HELIX 1 1 ASP A 277 ASN A 284 1 8 HELIX 2 2 ASP A 292 GLU A 301 1 10 HELIX 3 3 ASP A 356 TYR A 364 1 9 HELIX 4 4 ASP A 366 CYS A 370 5 5 HELIX 5 5 SER A 388 THR A 401 1 14 HELIX 6 6 THR A 402 ALA A 408 1 7 HELIX 7 7 PRO A 412 LYS A 420 1 9 HELIX 8 8 THR B 23 LYS B 36 1 14 HELIX 9 9 PRO B 38 ASP B 40 5 3 HELIX 10 10 PRO B 100 LYS B 104 5 5 HELIX 11 11 ARG C 33 LEU C 37 1 5 HELIX 12 12 SER C 39 MET C 45 1 7 HELIX 13 13 PRO C 66 TYR C 83 1 18 HELIX 14 14 ALA C 96 ASP C 111 1 16 SHEET 1 AA 2 GLN A 271 LEU A 274 0 SHEET 2 AA 2 HIS A 423 SER A 426 -1 O TYR A 424 N MET A 273 SHEET 1 AB 3 TYR A 287 VAL A 290 0 SHEET 2 AB 3 THR A 307 ASP A 312 1 O LEU A 310 N TRP A 288 SHEET 3 AB 3 THR A 379 PRO A 380 1 O THR A 379 N PHE A 308 SHEET 1 AC 4 TYR A 287 VAL A 290 0 SHEET 2 AC 4 THR A 307 ASP A 312 1 O LEU A 310 N TRP A 288 SHEET 3 AC 4 PHE A 320 ARG A 326 -1 O SER A 321 N ARG A 311 SHEET 4 AC 4 ARG A 329 ARG A 334 -1 O ARG A 329 N ARG A 326 SHEET 1 AD 2 GLU A 336 TRP A 338 0 SHEET 2 AD 2 ASN A 341 SER A 343 -1 O ASN A 341 N TRP A 338 SHEET 1 BA 8 GLN B 49 LEU B 50 0 SHEET 2 BA 8 GLN B 42 LYS B 46 -1 O LYS B 46 N GLN B 49 SHEET 3 BA 8 ALA B 73 ALA B 81 -1 O GLY B 76 N TYR B 45 SHEET 4 BA 8 ASP B 2 ARG B 9 1 O PHE B 4 N ALA B 73 SHEET 5 BA 8 THR B 12 LYS B 19 -1 O THR B 12 N ARG B 9 SHEET 6 BA 8 GLU C 28 LYS C 32 1 O GLU C 28 N THR B 13 SHEET 7 BA 8 TYR C 18 ILE C 22 -1 O VAL C 19 N VAL C 31 SHEET 8 BA 8 GLU C 59 ASN C 61 1 O VAL C 60 N ILE C 22 SHEET 1 BB 4 GLN B 49 LEU B 50 0 SHEET 2 BB 4 GLN B 42 LYS B 46 -1 O LYS B 46 N GLN B 49 SHEET 3 BB 4 ALA B 73 ALA B 81 -1 O GLY B 76 N TYR B 45 SHEET 4 BB 4 THR B 84 PHE B 85 -1 O THR B 84 N ALA B 81 LINK O SER A 313 NA NA A1430 1555 1555 2.37 LINK O GLN A 315 NA NA A1430 1555 1555 2.50 LINK O TYR A 318 NA NA A1430 1555 1555 2.44 LINK NA NA A1430 O2 EDO A1431 1555 1555 2.50 LINK NA NA A1430 O HOH A2022 1555 1555 2.59 LINK NA NA A1430 O HOH A2023 1555 1555 2.41 SITE 1 AC1 6 SER A 313 GLN A 315 TYR A 318 EDO A1431 SITE 2 AC1 6 HOH A2022 HOH A2023 SITE 1 AC2 7 ASP A 312 SER A 313 TYR A 318 LEU A 319 SITE 2 AC2 7 GLU A 421 NA A1430 HOH A2020 CRYST1 154.770 154.770 67.909 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006461 0.003730 0.000000 0.00000 SCALE2 0.000000 0.007461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014726 0.00000