PDB Short entry for 2J0A HEADER TRANSFERASE 01-AUG-06 2J0A TITLE STRUCTURE OF THE CATALYTIC DOMAIN OF MOUSE MANIC FRINGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE MANIC FRINGE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 45-321; COMPND 5 SYNONYM: MANIC FRINGE, O-FUCOSYLPEPTIDE COMPND 6 3-BETA-N-ACETYLGLUCOSAMINYLTRANSFERASE; COMPND 7 EC: 2.4.1.222; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: ENGINEERED MUTATION TO REMOVE GLYCOSYLATION SITE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS GLYCOSYLTRANSFERASE, DEVELOPMENTAL PROTEIN, TRANSMEMBRANE, GOLGI KEYWDS 2 APPARATUS, NOTCH SIGNALING, MEMBRANE, TRANSFERASE, GLYCOPROTEIN, KEYWDS 3 SIGNAL-ANCHOR EXPDTA X-RAY DIFFRACTION AUTHOR M.JINEK,Y.-W.CHEN,H.CLAUSEN,S.M.COHEN,E.CONTI REVDAT 4 13-JUL-11 2J0A 1 VERSN REVDAT 3 24-FEB-09 2J0A 1 VERSN REVDAT 2 20-DEC-06 2J0A 1 JRNL REVDAT 1 04-SEP-06 2J0A 0 JRNL AUTH M.JINEK,Y.-W.CHEN,H.CLAUSEN,S.M.COHEN,E.CONTI JRNL TITL STRUCTURAL INSIGHTS INTO THE NOTCH-MODIFYING JRNL TITL 2 GLYCOSYLTRANSFERASE FRINGE JRNL REF NAT.STRUCT.MOL.BIOL. V. 13 945 2006 JRNL REFN ISSN 1545-9993 JRNL PMID 16964258 JRNL DOI 10.1038/NSMB1144 REMARK 2 REMARK 2 RESOLUTION. 1.8 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 23794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1273 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1957 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.96000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2021 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1380 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2757 ; 1.739 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3347 ; 1.178 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 6.734 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;36.000 ;23.441 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;15.483 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;12.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 305 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2222 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 425 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 348 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1290 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 892 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 940 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 69 ; 0.151 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.229 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.279 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.225 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1222 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1979 ; 1.793 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 804 ; 3.291 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 775 ; 4.890 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 318 REMARK 3 ORIGIN FOR THE GROUP (A): 23.6860 -0.1890 34.7270 REMARK 3 T TENSOR REMARK 3 T11: -0.0599 T22: -0.1267 REMARK 3 T33: -0.1135 T12: 0.0127 REMARK 3 T13: -0.0014 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.2746 L22: 1.0801 REMARK 3 L33: 1.1202 L12: 0.0705 REMARK 3 L13: 0.5172 L23: -0.0138 REMARK 3 S TENSOR REMARK 3 S11: 0.0037 S12: 0.0003 S13: -0.1809 REMARK 3 S21: 0.0273 S22: -0.0067 S23: 0.0370 REMARK 3 S31: 0.0382 S32: -0.1125 S33: 0.0031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. SIDECHAINS GLU99, LYS150, GLN161, ASP162, REMARK 3 ARG163, ARG228, ARG246, LYS282 DISORDERED REMARK 4 REMARK 4 2J0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-06. REMARK 100 THE PDBE ID CODE IS EBI-29548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25066 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 81.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, HYSS, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.8 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SULFATE, 20% REMARK 280 PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 81.30000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 81.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 HOH A2049 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 109 TO GLN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 185 TO GLN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 PRO A 43 REMARK 465 MET A 44 REMARK 465 ASN A 45 REMARK 465 PRO A 46 REMARK 465 GLY A 47 REMARK 465 PRO A 48 REMARK 465 LEU A 49 REMARK 465 SER A 111 REMARK 465 ALA A 112 REMARK 465 GLU A 113 REMARK 465 HIS A 114 REMARK 465 SER A 115 REMARK 465 HIS A 116 REMARK 465 PRO A 117 REMARK 465 ASN A 173 REMARK 465 ARG A 174 REMARK 465 PRO A 175 REMARK 465 ILE A 176 REMARK 465 HIS A 177 REMARK 465 ALA A 178 REMARK 465 SER A 179 REMARK 465 GLU A 180 REMARK 465 LEU A 181 REMARK 465 GLN A 182 REMARK 465 SER A 183 REMARK 465 LYS A 184 REMARK 465 GLN A 185 REMARK 465 ARG A 186 REMARK 465 THR A 187 REMARK 465 LYS A 188 REMARK 465 LEU A 189 REMARK 465 VAL A 190 REMARK 465 ARG A 191 REMARK 465 ALA A 319 REMARK 465 ALA A 320 REMARK 465 PRO A 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 72 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 300 NE - CZ - NH1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 300 NE - CZ - NH2 ANGL. DEV. = -8.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -112.48 -107.18 REMARK 500 ILE A 82 36.89 -150.62 REMARK 500 LEU A 257 39.31 -96.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 107 23.7 L L OUTSIDE RANGE REMARK 500 VAL A 165 22.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1320 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 118 O REMARK 620 2 LEU A 226 O 96.9 REMARK 620 3 LEU A 229 O 164.5 93.0 REMARK 620 4 THR A 234 OG1 92.0 87.2 76.6 REMARK 620 5 HOH A2051 O 87.4 174.6 83.5 95.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A1320 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J0B RELATED DB: PDB REMARK 900 STRUCTURE OF THE CATALYTIC DOMAIN OF MOUSE REMARK 900 MANIC FRINGE IN COMPLEX WITH UDP AND REMARK 900 MANGANESE DBREF 2J0A A 42 44 PDB 2J0A 2J0A 42 44 DBREF 2J0A A 45 321 UNP O09008 MFNG_MOUSE 45 321 SEQADV 2J0A GLN A 109 UNP O09008 ASN 109 ENGINEERED MUTATION SEQRES 1 A 280 GLY PRO MET ASN PRO GLY PRO LEU GLU LEU GLN LEU GLY SEQRES 2 A 280 ASP ILE PHE ILE ALA VAL LYS THR THR TRP ALA PHE HIS SEQRES 3 A 280 ARG SER ARG LEU ASP LEU LEU LEU ASP THR TRP VAL SER SEQRES 4 A 280 ARG ILE ARG GLN GLN THR PHE ILE PHE THR ASP SER PRO SEQRES 5 A 280 ASP GLU ARG LEU GLN GLU ARG LEU GLY PRO HIS LEU VAL SEQRES 6 A 280 VAL THR GLN CYS SER ALA GLU HIS SER HIS PRO ALA LEU SEQRES 7 A 280 SER CYS LYS MET ALA ALA GLU PHE ASP ALA PHE LEU VAL SEQRES 8 A 280 SER GLY LEU ARG TRP PHE CYS HIS VAL ASP ASP ASP ASN SEQRES 9 A 280 TYR VAL ASN PRO LYS ALA LEU LEU GLN LEU LEU LYS THR SEQRES 10 A 280 PHE PRO GLN ASP ARG ASP VAL TYR VAL GLY LYS PRO SER SEQRES 11 A 280 LEU ASN ARG PRO ILE HIS ALA SER GLU LEU GLN SER LYS SEQRES 12 A 280 GLN ARG THR LYS LEU VAL ARG PHE TRP PHE ALA THR GLY SEQRES 13 A 280 GLY ALA GLY PHE CYS ILE ASN ARG GLN LEU ALA LEU LYS SEQRES 14 A 280 MET VAL PRO TRP ALA SER GLY SER HIS PHE VAL ASP THR SEQRES 15 A 280 SER ALA LEU ILE ARG LEU PRO ASP ASP CYS THR VAL GLY SEQRES 16 A 280 TYR ILE ILE GLU CYS LYS LEU GLY GLY ARG LEU GLN PRO SEQRES 17 A 280 SER PRO LEU PHE HIS SER HIS LEU GLU THR LEU GLN LEU SEQRES 18 A 280 LEU GLY ALA ALA GLN LEU PRO GLU GLN VAL THR LEU SER SEQRES 19 A 280 TYR GLY VAL PHE GLU GLY LYS LEU ASN VAL ILE LYS LEU SEQRES 20 A 280 PRO GLY PRO PHE SER HIS GLU GLU ASP PRO SER ARG PHE SEQRES 21 A 280 ARG SER LEU HIS CYS LEU LEU TYR PRO ASP THR PRO TRP SEQRES 22 A 280 CYS PRO LEU LEU ALA ALA PRO HET SO4 A1319 5 HET K A1320 1 HETNAM SO4 SULFATE ION HETNAM K POTASSIUM ION FORMUL 2 SO4 O4 S 2- FORMUL 3 K K 1+ FORMUL 4 HOH *85(H2 O) HELIX 1 1 GLN A 52 GLY A 54 5 3 HELIX 2 2 THR A 63 HIS A 67 5 5 HELIX 3 3 ARG A 70 THR A 77 1 8 HELIX 4 4 TRP A 78 ILE A 82 5 5 HELIX 5 5 ASP A 94 GLY A 102 1 9 HELIX 6 6 SER A 120 GLY A 134 1 15 HELIX 7 7 ASN A 148 LYS A 157 1 10 HELIX 8 8 ARG A 205 SER A 216 1 12 HELIX 9 9 PRO A 230 LYS A 242 1 13 HELIX 10 10 THR A 259 LEU A 263 5 5 HELIX 11 11 GLN A 267 GLN A 271 5 5 HELIX 12 12 ARG A 300 TYR A 309 1 10 SHEET 1 AA 7 LEU A 105 VAL A 107 0 SHEET 2 AA 7 THR A 86 THR A 90 1 O ILE A 88 N VAL A 106 SHEET 3 AA 7 ILE A 56 LYS A 61 1 O ILE A 58 N PHE A 87 SHEET 4 AA 7 TRP A 137 ASP A 142 1 O TRP A 137 N PHE A 57 SHEET 5 AA 7 PHE A 201 ASN A 204 -1 O PHE A 201 N HIS A 140 SHEET 6 AA 7 TYR A 166 GLY A 168 -1 O VAL A 167 N CYS A 202 SHEET 7 AA 7 LEU A 247 PRO A 249 1 O GLN A 248 N GLY A 168 SHEET 1 AB 2 ASN A 145 VAL A 147 0 SHEET 2 AB 2 THR A 273 SER A 275 -1 O LEU A 274 N TYR A 146 SHEET 1 AC 2 PRO A 170 SER A 171 0 SHEET 2 AC 2 PHE A 194 ALA A 195 -1 O PHE A 194 N SER A 171 SHEET 1 AD 2 GLY A 277 PHE A 279 0 SHEET 2 AD 2 LYS A 282 ASN A 284 -1 O LYS A 282 N PHE A 279 SSBOND 1 CYS A 110 CYS A 121 1555 1555 1.97 SSBOND 2 CYS A 139 CYS A 202 1555 1555 2.05 SSBOND 3 CYS A 306 CYS A 315 1555 1555 2.02 LINK K K A1320 O ALA A 118 1555 1555 2.52 LINK K K A1320 O LEU A 226 1555 1555 2.64 LINK K K A1320 O LEU A 229 1555 1555 2.63 LINK K K A1320 OG1 THR A 234 1555 1555 2.86 LINK K K A1320 O HOH A2051 1555 1555 2.44 CISPEP 1 GLY A 290 PRO A 291 0 6.34 SITE 1 AC1 6 ARG A 205 TRP A 214 VAL A 221 ASP A 222 SITE 2 AC1 6 LYS A 242 HOH A2085 SITE 1 AC2 5 ALA A 118 LEU A 226 LEU A 229 THR A 234 SITE 2 AC2 5 HOH A2051 CRYST1 162.600 41.400 39.800 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006150 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025126 0.00000