PDB Short entry for 2J1I HEADER TRANSPORT PROTEIN 11-AUG-06 2J1I TITLE THE TRANSMEMBRANE DOMAIN OF PHOSPHOLEMMAN (FXYD1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLEMMAN; COMPND 3 SYNONYM: FXYD DOMAIN-CONTAINING ION TRANSPORT REGULATOR 1; COMPND 4 CHAIN: A, B, C, D; COMPND 5 FRAGMENT: TRANSMEMBRANE FRAGMENT, RESIDUES 32-59; COMPND 6 OTHER_DETAILS: SYNTHETIC PEPTIDE, NON-COVALENTLY COMPND 7 ASSOCIATED TRANSMEMBRANE PEPTIDE TETRAMER SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 OTHER_DETAILS: SYNTHETIC TRANSMEMBRANE PEPTIDE KEYWDS CHLORIDE CHANNEL, TRANSMEMBRANE PEPTIDE, KEYWDS 2 ALPHA-HELIX, IONIC CHANNEL, NA+/K+ ATPASE, KEYWDS 3 MEMBRANE, CHLORIDE, TETRAMER, TRANSPORT, ION CHANNEL, KEYWDS 4 ION TRANSPORT, TRANSMEMBRANE, PHOSPHORYLATION, KEYWDS 5 TRANSPORT PROTEIN EXPDTA THEORETICAL MODEL AUTHOR A.J.BEEVERS,A.KUKOL REVDAT 2 13-NOV-07 2J1I 1 JRNL REVDAT 1 09-OCT-07 2J1I 0 JRNL AUTH A.J.BEEVERS,A.KUKOL JRNL TITL PHOSPHOLEMMAN TRANSMEMBRANE STRUCTURE REVEALS JRNL TITL 2 POTENTIAL INTERACTIONS WITH NA+/K+-ATPASE. JRNL REF J.BIOL.CHEM. V. 282 32742 2007 JRNL REFN ASTM JBCHA3 US ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GROMACS REMARK 3 AUTHORS : LINDAHL, HESS, VAN DER SPOEL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND REMARK 3 IN THE CITATION ABOVE. REMARK 4 REMARK 4 2J1I COMPLIES WITH FORMAT V. 3.1, 01-AUG-2007 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 14-AUG-2006. REMARK 100 THE EBI ID CODE IS EBI-29665. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: MODEL BASED ON SYSTEMATIC CONFORMATIONAL SEARCH OF REMARK 220 HELIX-HELIX INTERACTION INCLUDING SHORT MOLECULAR DYNAMICS REMARK 220 SIMULATION WITH ORIENTATIONAL CONSTRAINTS FROM SITE- REMARK 220 SPECIFIC INFRARED DICHROISM EXPERIMENTS. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK ALSO PROVIDES INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 DETAILS:SEE REMARK 350 FOR THE AUTHOR PROVIDED AND REMARK 300 PROGRAMGENERATED ASSEMBLY INFORMATION FOR THE REMARK 300 STRUCTURE INTHIS ENTRY. THE REMARK ALSO PROVIDES REMARK 300 INFORMATION ONBURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: REMARK 350 SOFTWARE USED: PQS REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: REMARK 350 SOFTWARE USED: PQS REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: REMARK 350 SOFTWARE USED: PQS REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: REMARK 350 SOFTWARE USED: PQS REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCELIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 52 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 52 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 TYR D 27 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 35 -79.94 1.27 REMARK 500 PHE A 42 5.42 -64.33 REMARK 500 TYR B 27 -70.56 -131.57 REMARK 500 ILE B 40 4.49 -68.83 REMARK 500 LEU B 44 -58.41 65.64 REMARK 500 VAL C 36 -68.99 -17.00 REMARK 500 ILE C 40 47.06 -92.86 REMARK 500 ILE C 48 46.47 -73.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 27 0.10 SIDE CHAIN REMARK 500 TYR D 27 0.12 SIDE CHAIN REMARK 500 ARG D 53 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 0 LEU A 35 -10.34 REMARK 500 0 GLY A 39 -13.93 REMARK 500 0 GLY B 34 -15.84 REMARK 500 0 ILE C 40 -14.99 REMARK 500 0 LEU C 41 -11.98 REMARK 500 0 LEU C 44 12.75 REMARK 500 0 GLY C 45 -12.34 REMARK 500 0 ILE C 48 -10.13 REMARK 500 0 LEU D 41 -10.29 REMARK 500 0 LEU D 44 -11.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 12 TO 39 DBREF 2J1I A 26 53 UNP O00168 PLM_HUMAN 32 59 DBREF 2J1I A 54 54 PDB 2J1I 2J1I 54 54 DBREF 2J1I B 26 53 UNP O00168 PLM_HUMAN 32 59 DBREF 2J1I B 54 54 PDB 2J1I 2J1I 54 54 DBREF 2J1I C 26 53 UNP O00168 PLM_HUMAN 32 59 DBREF 2J1I C 54 54 PDB 2J1I 2J1I 54 54 DBREF 2J1I D 26 53 UNP O00168 PLM_HUMAN 32 59 DBREF 2J1I D 54 54 PDB 2J1I 2J1I 54 54 SEQRES 1 A 29 ASP TYR GLN SER LEU GLN ILE GLY GLY LEU VAL ILE ALA SEQRES 2 A 29 GLY ILE LEU PHE ILE LEU GLY ILE LEU ILE VAL LEU SER SEQRES 3 A 29 ARG ARG CYN SEQRES 1 B 29 ASP TYR GLN SER LEU GLN ILE GLY GLY LEU VAL ILE ALA SEQRES 2 B 29 GLY ILE LEU PHE ILE LEU GLY ILE LEU ILE VAL LEU SER SEQRES 3 B 29 ARG ARG CYN SEQRES 1 C 29 ASP TYR GLN SER LEU GLN ILE GLY GLY LEU VAL ILE ALA SEQRES 2 C 29 GLY ILE LEU PHE ILE LEU GLY ILE LEU ILE VAL LEU SER SEQRES 3 C 29 ARG ARG CYN SEQRES 1 D 29 ASP TYR GLN SER LEU GLN ILE GLY GLY LEU VAL ILE ALA SEQRES 2 D 29 GLY ILE LEU PHE ILE LEU GLY ILE LEU ILE VAL LEU SER SEQRES 3 D 29 ARG ARG CYN HET ACE A 25 3 HET ACE B 25 3 HET ACE C 25 3 HET ACE D 25 3 HET CYN A 54 2 HET CYN B 54 2 HET CYN C 54 2 HET CYN D 54 2 HETNAM ACE ACETYL GROUP HETNAM CYN CYANIDE ION FORMUL 5 CYN 4(C N 1-) FORMUL 6 ACE 4() HELIX 1 1 ASP A 26 GLY A 34 1 9 HELIX 2 2 LEU A 35 ALA A 38 5 4 HELIX 3 3 LEU A 41 ILE A 46 1 6 HELIX 4 4 ILE A 46 ARG A 53 1 8 HELIX 5 5 TYR B 27 ALA B 38 1 12 HELIX 6 6 GLY B 39 ILE B 43 5 5 HELIX 7 7 LEU B 47 ARG B 53 1 7 HELIX 8 8 TYR C 27 GLY C 34 1 8 HELIX 9 9 GLY C 34 ILE C 40 1 7 HELIX 10 10 LEU C 41 LEU C 44 5 4 HELIX 11 11 ILE C 48 ARG C 53 1 6 HELIX 12 12 GLN D 28 GLY D 34 1 7 HELIX 13 13 GLY D 34 ILE D 40 1 7 HELIX 14 14 LEU D 41 ILE D 46 1 6 HELIX 15 15 LEU D 47 ARG D 53 1 7 LINK C ACE A 25 N ASP A 26 1555 1555 1.33 LINK C ARG A 53 N CYN A 54 1555 1555 1.34 LINK C ACE B 25 N ASP B 26 1555 1555 1.33 LINK C ARG B 53 N CYN B 54 1555 1555 1.33 LINK C ACE C 25 N ASP C 26 1555 1555 1.33 LINK C ARG C 53 N CYN C 54 1555 1555 1.34 LINK C ACE D 25 N ASP D 26 1555 1555 1.32 LINK C ARG D 53 N CYN D 54 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000