PDB Short entry for 2J2Z HEADER CHAPERONE/SURFACE ACTIVE PROTEIN 17-AUG-06 2J2Z TITLE X-RAY STRUCTURE OF THE CHAPERONE PAPD IN COMPLEX WITH THE PILUS TITLE 2 TERMINATOR SUBUNIT PAPH AT 2.3 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN PAPD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PERIPLASMIC CHAPERONE PAPD; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PAP FIMBRIAL MINOR PILIN PROTEIN; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PAPH; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: RESIDUES 2 TO 22 DELETED (NON DONOR STRAND EXCHANGE COMPND 12 REGION). N_TERMINAL EXTENSION 1 DELETED (NTD1). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: UTI 89; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 STRAIN: J96; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS CHAPERONE/SURFACE ACTIVE PROTEIN, PERIPLASMIC, PILUS TERMINATION, KEYWDS 2 IMMUNOGLOBULIN DOMAIN, PAPH, PAPD, FIMBRIA, CHAPERONE, P5 POCKET, KEYWDS 3 CHAPERONE- SURFACE ACTIVE PROTEIN COMPLEX, CHAPERONE-SURFACE ACTIVE KEYWDS 4 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.VERGER,E.MILLER,H.REMAUT,G.WAKSMAN,S.HULTGREN REVDAT 4 13-DEC-23 2J2Z 1 LINK REVDAT 3 24-FEB-09 2J2Z 1 VERSN REVDAT 2 20-DEC-06 2J2Z 1 JRNL REVDAT 1 08-NOV-06 2J2Z 0 JRNL AUTH D.VERGER,E.MILLER,H.REMAUT,G.WAKSMAN,S.HULTGREN JRNL TITL MOLECULAR MECHANISM OF P PILUS TERMINATION IN UROPATHOGENIC JRNL TITL 2 ESCHERICHIA COLI. JRNL REF EMBO REP. V. 7 1228 2006 JRNL REFN ISSN 1469-221X JRNL PMID 17082819 JRNL DOI 10.1038/SJ.EMBOR.7400833 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 28668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 29 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 924 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 54 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.005 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -15.22600 REMARK 3 B22 (A**2) : 7.14400 REMARK 3 B33 (A**2) : 8.08300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.253 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 40.51 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FINAL MODEL INCLUDES ALL PAPD MAIN REMARK 3 CHAIN ATOMS EXCEPT THE LAST TWO RESIDUES AND ALL PAPHNTD1 MAIN REMARK 3 CHAIN ATOMS EXCEPT THE FIRST 2 (RESIDUES 1 AND 23). THE FINAL REMARK 3 MODEL ALSO MISSES ONE SIDE CHAIN OF PAPD AND 13 SIDE CHAINS OF REMARK 3 PAPHNTD1.THE ELECTRON DENSITY WAS ABSENT FOR THESE EXPOSED REMARK 3 RESIDUES THUS THEY WERE MODELLED AS ALANINES REMARK 4 REMARK 4 2J2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-AUG-06. REMARK 100 THE DEPOSITION ID IS D_1290029746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28676 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1N0L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M COCL2, 0.1 M MES PH 6.5, 1.8 M REMARK 280 AS, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.73000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.65000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.73000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.65000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.42000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.73000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.65000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.42000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.73000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.65000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.42000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO CO B1174 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2018 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 PHE B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 GLY B 7 REMARK 465 MET B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 GLU B 12 REMARK 465 TYR B 13 REMARK 465 TRP B 14 REMARK 465 GLY B 15 REMARK 465 GLU B 16 REMARK 465 GLU B 17 REMARK 465 HIS B 18 REMARK 465 VAL B 19 REMARK 465 TRP B 20 REMARK 465 TRP B 21 REMARK 465 ASP B 22 REMARK 465 GLY B 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 217 CA C O CB CG CD OE1 REMARK 470 GLU A 217 OE2 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 ARG B 98 CD NE CZ NH1 NH2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ASN B 140 CG OD1 ND2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 PHE B 163 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE A 46 CD1 ILE A 46 4555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 39 -169.36 -79.80 REMARK 500 SER A 65 -156.33 -154.97 REMARK 500 LEU A 156 111.75 -164.06 REMARK 500 ALA B 111 151.15 -43.88 REMARK 500 GLU B 142 45.43 -87.20 REMARK 500 ALA B 159 156.38 -47.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B1174 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 28 NE2 REMARK 620 2 HIS B 28 NE2 79.0 REMARK 620 3 HOH B2099 O 68.6 104.2 REMARK 620 4 HOH B2099 O 104.2 68.6 171.1 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1176 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1177 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1178 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1179 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N0L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PAPD CHAPERONE (C- TERMINALLY 6XHISTIDINE- REMARK 900 TAGGED) BOUND TO THE PAPE PILUS SUBUNIT (N-TERMINAL-DELETED) FROM REMARK 900 UROPATHOGENIC E. COLI REMARK 900 RELATED ID: 1PDK RELATED DB: PDB REMARK 900 PAPD-PAPK CHAPERONE-PILUS SUBUNIT COMPLEX FROM E.COLI P PILUS REMARK 900 RELATED ID: 1QPP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 1QPX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF-CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 3DPA RELATED DB: PDB REMARK 900 PAPD DBREF 2J2Z A 1 218 UNP P15319 PAPD_ECOLI 22 239 DBREF 2J2Z B 1 173 UNP P07111 PAPH_ECOLI 23 195 SEQRES 1 A 218 ALA VAL SER LEU ASP ARG THR ARG ALA VAL PHE ASP GLY SEQRES 2 A 218 SER GLU LYS SER MET THR LEU ASP ILE SER ASN ASP ASN SEQRES 3 A 218 LYS GLN LEU PRO TYR LEU ALA GLN ALA TRP ILE GLU ASN SEQRES 4 A 218 GLU ASN GLN GLU LYS ILE ILE THR GLY PRO VAL ILE ALA SEQRES 5 A 218 THR PRO PRO VAL GLN ARG LEU GLU PRO GLY ALA LYS SER SEQRES 6 A 218 MET VAL ARG LEU SER THR THR PRO ASP ILE SER LYS LEU SEQRES 7 A 218 PRO GLN ASP ARG GLU SER LEU PHE TYR PHE ASN LEU ARG SEQRES 8 A 218 GLU ILE PRO PRO ARG SER GLU LYS ALA ASN VAL LEU GLN SEQRES 9 A 218 ILE ALA LEU GLN THR LYS ILE LYS LEU PHE TYR ARG PRO SEQRES 10 A 218 ALA ALA ILE LYS THR ARG PRO ASN GLU VAL TRP GLN ASP SEQRES 11 A 218 GLN LEU ILE LEU ASN LYS VAL SER GLY GLY TYR ARG ILE SEQRES 12 A 218 GLU ASN PRO THR PRO TYR TYR VAL THR VAL ILE GLY LEU SEQRES 13 A 218 GLY GLY SER GLU LYS GLN ALA GLU GLU GLY GLU PHE GLU SEQRES 14 A 218 THR VAL MET LEU SER PRO ARG SER GLU GLN THR VAL LYS SEQRES 15 A 218 SER ALA ASN TYR ASN THR PRO TYR LEU SER TYR ILE ASN SEQRES 16 A 218 ASP TYR GLY GLY ARG PRO VAL LEU SER PHE ILE CYS ASN SEQRES 17 A 218 GLY SER ARG CYS SER VAL LYS LYS GLU LYS SEQRES 1 B 173 GLY PRO PHE PRO PRO PRO GLY MET SER LEU PRO GLU TYR SEQRES 2 B 173 TRP GLY GLU GLU HIS VAL TRP TRP ASP GLY ARG ALA ALA SEQRES 3 B 173 PHE HIS GLY GLU VAL VAL ARG PRO ALA CYS THR LEU ALA SEQRES 4 B 173 MET GLU ASP ALA TRP GLN ILE ILE ASP MET GLY GLU THR SEQRES 5 B 173 PRO VAL ARG ASP LEU GLN ASN GLY PHE SER GLY PRO GLU SEQRES 6 B 173 ARG LYS PHE SER LEU ARG LEU ARG ASN CYS GLU PHE ASN SEQRES 7 B 173 SER GLN GLY GLY ASN LEU PHE SER ASP SER ARG ILE ARG SEQRES 8 B 173 VAL THR PHE ASP GLY VAL ARG GLY GLU THR PRO ASP LYS SEQRES 9 B 173 PHE ASN LEU SER GLY GLN ALA LYS GLY ILE ASN LEU GLN SEQRES 10 B 173 ILE ALA ASP VAL ARG GLY ASN ILE ALA ARG ALA GLY LYS SEQRES 11 B 173 VAL MET PRO ALA ILE PRO LEU THR GLY ASN GLU GLU ALA SEQRES 12 B 173 LEU ASP TYR THR LEU ARG ILE VAL ARG ASN GLY LYS LYS SEQRES 13 B 173 LEU GLU ALA GLY ASN TYR PHE ALA VAL LEU GLY PHE ARG SEQRES 14 B 173 VAL ASP TYR GLU HET SO4 A1218 5 HET SO4 A1219 5 HET SO4 A1220 5 HET SO4 A1221 5 HET SO4 A1222 5 HET SO4 A1223 5 HET CO B1174 1 HET SO4 B1175 5 HET SO4 B1176 5 HET SO4 B1177 5 HET SO4 B1178 5 HET SO4 B1179 5 HETNAM SO4 SULFATE ION HETNAM CO COBALT (II) ION FORMUL 3 SO4 11(O4 S 2-) FORMUL 9 CO CO 2+ FORMUL 15 HOH *274(H2 O) HELIX 1 1 PRO A 73 LEU A 78 5 6 HELIX 2 2 PRO A 117 LYS A 121 5 5 HELIX 3 3 TRP A 128 GLN A 131 5 4 HELIX 4 4 SER A 159 GLY A 166 1 8 HELIX 5 5 PRO B 53 ASN B 59 1 7 SHEET 1 AA 4 VAL A 2 LEU A 4 0 SHEET 2 AA 4 SER A 17 ASN A 24 -1 O SER A 23 N SER A 3 SHEET 3 AA 4 LYS A 64 THR A 71 -1 O SER A 65 N ILE A 22 SHEET 4 AA 4 VAL A 50 THR A 53 -1 O ILE A 51 N SER A 70 SHEET 1 AB 4 ARG A 8 ASP A 12 0 SHEET 2 AB 4 VAL A 102 ARG A 116 1 O LYS A 112 N ALA A 9 SHEET 3 AB 4 SER A 84 ILE A 93 -1 O SER A 84 N TYR A 115 SHEET 4 AB 4 TYR A 31 GLU A 38 -1 O LEU A 32 N ILE A 93 SHEET 1 AC 3 ARG A 8 ASP A 12 0 SHEET 2 AC 3 VAL A 102 ARG A 116 1 O LYS A 112 N ALA A 9 SHEET 3 AC 3 TYR B 162 TYR B 172 1 O TYR B 162 N VAL A 102 SHEET 1 AD 8 VAL A 171 LEU A 173 0 SHEET 2 AD 8 VAL A 151 GLY A 157 -1 O VAL A 151 N LEU A 173 SHEET 3 AD 8 TYR A 190 TYR A 193 -1 O TYR A 190 N GLY A 157 SHEET 4 AD 8 VAL A 202 ASN A 208 -1 O LEU A 203 N LEU A 191 SHEET 5 AD 8 ARG A 211 VAL A 214 -1 O ARG A 211 N ASN A 208 SHEET 6 AD 8 ILE A 133 VAL A 137 -1 O LEU A 134 N CYS A 212 SHEET 7 AD 8 GLY A 140 ASN A 145 -1 O GLY A 140 N VAL A 137 SHEET 8 AD 8 SER A 177 LYS A 182 -1 O SER A 177 N ASN A 145 SHEET 1 BA 4 THR B 37 ALA B 39 0 SHEET 2 BA 4 ARG B 66 ARG B 73 -1 O ARG B 71 N ALA B 39 SHEET 3 BA 4 ALA B 143 ARG B 152 -1 O LEU B 144 N LEU B 70 SHEET 4 BA 4 ILE B 114 ALA B 119 -1 O ASN B 115 N VAL B 151 SHEET 1 BB 2 ASN B 78 SER B 79 0 SHEET 2 BB 2 GLY B 82 ASN B 83 -1 O GLY B 82 N SER B 79 SSBOND 1 CYS A 207 CYS A 212 1555 1555 2.05 SSBOND 2 CYS B 36 CYS B 75 1555 1555 2.04 LINK NE2 HIS B 28 CO CO B1174 1555 1555 2.72 LINK NE2 HIS B 28 CO CO B1174 3555 1555 2.72 LINK CO CO B1174 O HOH B2099 1555 3555 2.45 LINK CO CO B1174 O HOH B2099 1555 1555 2.45 CISPEP 1 GLY A 48 PRO A 49 0 0.30 CISPEP 2 THR A 53 PRO A 54 0 -0.47 SITE 1 AC1 3 ASN A 39 GLU A 40 LEU A 85 SITE 1 AC2 5 LYS A 44 THR A 47 ASP A 74 ARG A 91 SITE 2 AC2 5 HOH A2042 SITE 1 AC3 3 ARG A 82 SER A 174 HOH A2039 SITE 1 AC4 3 ILE A 206 LYS A 216 ARG B 122 SITE 1 AC5 2 ARG A 82 ARG A 176 SITE 1 AC6 6 PRO A 79 GLN A 80 ASP A 81 HOH A2167 SITE 2 AC6 6 HOH A2168 HOH A2169 SITE 1 AC7 2 HIS B 28 HOH B2099 SITE 1 AC8 5 SER A 159 LYS A 161 PHE B 61 SER B 62 SITE 2 AC8 5 ARG B 149 SITE 1 AC9 3 GLN B 58 ARG B 152 LEU B 157 SITE 1 BC1 4 GLY A 199 ARG A 200 ALA B 26 PHE B 27 SITE 1 BC2 6 ARG B 73 ASN B 74 GLU B 142 HOH B2102 SITE 2 BC2 6 HOH B2103 HOH B2104 SITE 1 BC3 8 PHE B 85 ASP B 120 VAL B 121 LEU B 137 SITE 2 BC3 8 LEU B 144 ASP B 145 TYR B 146 HOH B2105 CRYST1 103.460 149.300 82.840 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012071 0.00000