PDB Short entry for 2J3W HEADER TRANSPORT 23-AUG-06 2J3W TITLE THE CRYSTAL STRUCTURE OF THE BET3-TRS31-SEDLIN COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAFFICKING PROTEIN PARTICLE COMPLEX PROTEIN 2; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SEDLIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ZGC 92866; COMPND 8 CHAIN: B, F; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3; COMPND 12 CHAIN: D, E; COMPND 13 SYNONYM: BET3 HOMOLOG; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA, PET15B, PET30A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BRACHYDANIO RERIO; SOURCE 11 ORGANISM_COMMON: ZEBRAFISH; SOURCE 12 ORGANISM_TAXID: 7955; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA, PET15B, PET30A; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 23 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA, PET15B, PET30A KEYWDS MULTISUBUNIT TETHERING FACTOR, TRAPP, PALMITATE, TRANSPORT, KEYWDS 2 LIPOPROTEIN, ER-GOLGI TRANSPORT, ENDOPLASMIC RETICULUM, KEYWDS 3 TRANSCRIPTION, GOLGI APPARATUS, VESICLE TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Y.-G.KIM,B.-H.OH REVDAT 5 07-AUG-13 2J3W 1 SOURCE REMARK REVDAT 4 26-OCT-11 2J3W 1 JRNL REMARK SEQRES HET REVDAT 4 2 HETNAM FORMUL MODRES LINK REVDAT 4 3 SITE ATOM TER HETATM REVDAT 4 4 CONECT MASTER VERSN REVDAT 3 01-SEP-09 2J3W 1 HEADER REMARK DBREF HETSYN REVDAT 3 2 MASTER REVDAT 2 24-FEB-09 2J3W 1 VERSN REVDAT 1 27-NOV-06 2J3W 0 JRNL AUTH Y.-G.KIM,S.RAUNSER,C.MUNGER,J.WAGNER,Y.-L.SONG,M.CYGLER, JRNL AUTH 2 T.WALZ,B.-H.OH,M.SACHER JRNL TITL THE ARCHITECTURE OF THE MULTISUBUNIT TRAPP I COMPLEX JRNL TITL 2 SUGGESTS A MODEL FOR VESICLE TETHERING. JRNL REF CELL(CAMBRIDGE,MASS.) V. 127 817 2006 JRNL REFN ISSN 0092-8674 JRNL PMID 17110339 JRNL DOI 10.1016/J.CELL.2006.09.029 REMARK 2 REMARK 2 RESOLUTION. 2.1 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.1 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.0 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 57111 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.2296 REMARK 3 FREE R VALUE : 0.2765 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.7 REMARK 3 FREE R VALUE TEST SET COUNT : 2892 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.5 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 54219 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 215 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.270 REMARK 3 B22 (A**2) : 7.183 REMARK 3 B33 (A**2) : -12.454 REMARK 3 B12 (A**2) : 0.000 REMARK 3 B13 (A**2) : 11.263 REMARK 3 B23 (A**2) : 0.000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.0073 REMARK 3 BOND ANGLES (DEGREES) : 1.1519 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.347067 REMARK 3 BSOL : 39.3699 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : PLM.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2J3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-06. REMARK 100 THE PDBE ID CODE IS EBI-29817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 103.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.3 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG3350, 0.2 M MGCL2, REMARK 280 2% (W/V) BENZAMIDINE AND 0.1 M TRIS HCL (PH 8.0) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 116.10550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.53150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 116.10550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.53150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 VAL B 3 REMARK 465 ARG B 4 REMARK 465 PHE B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 GLY B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 ALA B 11 REMARK 465 ILE B 12 REMARK 465 LEU B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 SER B 16 REMARK 465 LEU B 17 REMARK 465 THR B 18 REMARK 465 ARG B 19 REMARK 465 PRO B 20 REMARK 465 ALA C 28 REMARK 465 GLU C 29 REMARK 465 SER C 30 REMARK 465 LYS C 31 REMARK 465 ASP C 32 REMARK 465 ASP C 33 REMARK 465 HIS C 34 REMARK 465 GLY D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ARG D 3 REMARK 465 GLN D 4 REMARK 465 ALA D 5 REMARK 465 ASN D 6 REMARK 465 ARG D 7 REMARK 465 GLY D 8 REMARK 465 THR D 9 REMARK 465 GLU D 10 REMARK 465 SER D 11 REMARK 465 LYS D 12 REMARK 465 VAL D 65 REMARK 465 GLY D 66 REMARK 465 ARG D 67 REMARK 465 ASN D 174 REMARK 465 LEU D 175 REMARK 465 PRO D 176 REMARK 465 ALA D 177 REMARK 465 GLY D 178 REMARK 465 GLU D 179 REMARK 465 GLU D 180 REMARK 465 GLY E -1 REMARK 465 ALA E 0 REMARK 465 MET E 1 REMARK 465 SER E 2 REMARK 465 ARG E 3 REMARK 465 GLN E 4 REMARK 465 ALA E 5 REMARK 465 ASN E 6 REMARK 465 ARG E 7 REMARK 465 GLY E 8 REMARK 465 THR E 9 REMARK 465 GLU E 10 REMARK 465 SER E 11 REMARK 465 VAL E 65 REMARK 465 GLY E 66 REMARK 465 ARG E 67 REMARK 465 ASN E 174 REMARK 465 LEU E 175 REMARK 465 PRO E 176 REMARK 465 ALA E 177 REMARK 465 GLY E 178 REMARK 465 GLU E 179 REMARK 465 GLU E 180 REMARK 465 MET F 1 REMARK 465 GLU F 2 REMARK 465 VAL F 3 REMARK 465 ARG F 4 REMARK 465 PHE F 5 REMARK 465 THR F 6 REMARK 465 ARG F 7 REMARK 465 GLY F 8 REMARK 465 LYS F 9 REMARK 465 SER F 10 REMARK 465 ALA F 11 REMARK 465 ILE F 12 REMARK 465 LEU F 13 REMARK 465 GLU F 14 REMARK 465 ARG F 15 REMARK 465 SER F 16 REMARK 465 LEU F 17 REMARK 465 THR F 18 REMARK 465 ARG F 19 REMARK 465 PRO F 20 REMARK 465 LYS F 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 0 CG CD OE1 OE2 REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ARG B 188 CA C O CB CG CD NE CZ NH1 NH2 REMARK 470 ARG C 35 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 122 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 64 CG OD1 ND2 REMARK 470 GLU D 108 CG CD OE1 OE2 REMARK 470 ARG D 170 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 173 CA C O CB CG OD1 OD2 REMARK 470 GLU E 35 CG CD OE1 OE2 REMARK 470 ASN E 64 CG OD1 ND2 REMARK 470 GLU E 108 CG CD OE1 OE2 REMARK 470 ARG E 170 CG CD NE CZ NH1 NH2 REMARK 470 ASP E 173 CA C O CB CG OD1 OD2 REMARK 470 LYS F 132 CG CD CE NZ REMARK 470 GLU F 133 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 60.41 74.11 REMARK 500 ALA A 28 -81.11 -37.80 REMARK 500 LYS A 62 -152.17 59.77 REMARK 500 ASN A 68 -126.03 61.52 REMARK 500 VAL B 91 -72.58 -98.28 REMARK 500 LYS B 100 148.40 -173.99 REMARK 500 ASN B 134 63.60 -69.99 REMARK 500 PHE B 156 71.80 -118.27 REMARK 500 LYS C 62 -150.27 48.97 REMARK 500 LYS C 66 113.67 -160.71 REMARK 500 ASN C 68 -119.64 62.28 REMARK 500 ARG C 90 90.44 -66.89 REMARK 500 GLN C 91 56.00 -110.16 REMARK 500 PRO C 117 -44.90 -25.57 REMARK 500 LEU C 138 -64.03 -96.06 REMARK 500 LEU C 139 15.19 -67.18 REMARK 500 HIS D 69 -122.97 -120.42 REMARK 500 ASP D 70 -166.05 -63.82 REMARK 500 VAL D 81 -78.89 -111.17 REMARK 500 GLU D 108 -64.03 -98.39 REMARK 500 ASN D 109 51.02 -111.38 REMARK 500 HIS D 122 42.79 -101.60 REMARK 500 ILE D 126 76.24 -106.81 REMARK 500 ARG D 169 168.33 176.11 REMARK 500 GLU E 35 30.25 -88.65 REMARK 500 SER E 63 -155.47 -165.54 REMARK 500 HIS E 69 -127.82 -139.16 REMARK 500 ASN E 95 43.59 38.01 REMARK 500 ILE E 126 74.76 -101.92 REMARK 500 ARG E 169 177.47 177.90 REMARK 500 VAL F 91 -78.25 -106.26 REMARK 500 PRO F 131 94.89 -60.05 REMARK 500 ASN F 134 64.28 -67.88 REMARK 500 PHE F 156 68.28 -116.52 REMARK 500 HIS F 165 118.25 -170.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM D1068 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM E1068 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J3R RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE BET3-TRS31 HETERODIMER. REMARK 900 RELATED ID: 2J3T RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF THE BET3-TRS33-BET5-TRS23 REMARK 900 COMPLEX. DBREF 2J3W A -1 0 PDB 2J3W 2J3W -1 0 DBREF 2J3W A 1 140 UNP Q9CQP2 TPPC2_MOUSE 1 140 DBREF 2J3W B 1 188 UNP Q6DGL5 Q6DGL5_DANRE 1 188 DBREF 2J3W C -1 0 PDB 2J3W 2J3W -1 0 DBREF 2J3W C 1 140 UNP Q9CQP2 TPPC2_MOUSE 1 140 DBREF 2J3W D -1 0 PDB 2J3W 2J3W -1 0 DBREF 2J3W D 1 180 UNP O55013 TPPC3_MOUSE 1 180 DBREF 2J3W E -1 0 PDB 2J3W 2J3W -1 0 DBREF 2J3W E 1 180 UNP O55013 TPPC3_MOUSE 1 180 DBREF 2J3W F 1 188 UNP Q6DGL5 Q6DGL5_DANRE 1 188 SEQRES 1 A 142 LEU GLU MET SER GLY SER PHE TYR PHE VAL ILE VAL GLY SEQRES 2 A 142 HIS HIS ASP ASN PRO VAL PHE GLU MET GLU PHE LEU PRO SEQRES 3 A 142 PRO GLY LYS ALA GLU SER LYS ASP ASP HIS ARG HIS LEU SEQRES 4 A 142 ASN GLN PHE ILE ALA HIS ALA ALA LEU ASP LEU VAL ASP SEQRES 5 A 142 GLU ASN MET TRP LEU SER ASN ASN MET TYR LEU LYS THR SEQRES 6 A 142 VAL ASP LYS PHE ASN GLU TRP PHE VAL SER ALA PHE VAL SEQRES 7 A 142 THR ALA GLY HIS MET ARG PHE ILE MET LEU HIS ASP VAL SEQRES 8 A 142 ARG GLN GLU ASP GLY ILE LYS ASN PHE PHE THR ASP VAL SEQRES 9 A 142 TYR ASP LEU TYR ILE LYS PHE ALA MET ASN PRO PHE TYR SEQRES 10 A 142 GLU PRO ASN SER PRO ILE ARG SER SER ALA PHE ASP ARG SEQRES 11 A 142 LYS VAL GLN PHE LEU GLY LYS LYS HIS LEU LEU SER SEQRES 1 B 188 MET GLU VAL ARG PHE THR ARG GLY LYS SER ALA ILE LEU SEQRES 2 B 188 GLU ARG SER LEU THR ARG PRO LYS THR GLU VAL SER VAL SEQRES 3 B 188 SER ALA PHE ALA LEU LEU PHE SER GLU MET VAL GLN TYR SEQRES 4 B 188 CYS GLN SER ARG VAL TYR SER VAL SER GLU LEU GLN ALA SEQRES 5 B 188 ARG LEU ALA ASP MET GLY GLN GLY VAL GLY ALA SER LEU SEQRES 6 B 188 LEU ASP VAL LEU VAL MET ARG GLU LYS ASN GLY LYS ARG SEQRES 7 B 188 GLU THR LYS VAL LEU ASN ILE LEU LEU PHE ILE LYS VAL SEQRES 8 B 188 ASN VAL TRP LYS ALA LEU PHE GLY LYS GLU ALA ASP LYS SEQRES 9 B 188 LEU GLU GLN ALA ASN ASP ASP ASP LYS THR TYR TYR ILE SEQRES 10 B 188 ILE GLU LYS GLU PRO LEU ILE ASN ALA TYR ILE SER VAL SEQRES 11 B 188 PRO LYS GLU ASN SER THR LEU ASN CYS ALA ALA PHE THR SEQRES 12 B 188 GLY GLY ILE VAL GLU ALA ILE LEU THR HIS SER GLY PHE SEQRES 13 B 188 PRO ALA LYS VAL THR VAL HIS TRP HIS LYS GLY THR THR SEQRES 14 B 188 LEU MET ILE LYS PHE ASP GLU SER VAL ILE ALA ARG ASP SEQRES 15 B 188 LYS ALA LEU ASP GLY ARG SEQRES 1 C 142 LEU GLU MET SER GLY SER PHE TYR PHE VAL ILE VAL GLY SEQRES 2 C 142 HIS HIS ASP ASN PRO VAL PHE GLU MET GLU PHE LEU PRO SEQRES 3 C 142 PRO GLY LYS ALA GLU SER LYS ASP ASP HIS ARG HIS LEU SEQRES 4 C 142 ASN GLN PHE ILE ALA HIS ALA ALA LEU ASP LEU VAL ASP SEQRES 5 C 142 GLU ASN MET TRP LEU SER ASN ASN MET TYR LEU LYS THR SEQRES 6 C 142 VAL ASP LYS PHE ASN GLU TRP PHE VAL SER ALA PHE VAL SEQRES 7 C 142 THR ALA GLY HIS MET ARG PHE ILE MET LEU HIS ASP VAL SEQRES 8 C 142 ARG GLN GLU ASP GLY ILE LYS ASN PHE PHE THR ASP VAL SEQRES 9 C 142 TYR ASP LEU TYR ILE LYS PHE ALA MET ASN PRO PHE TYR SEQRES 10 C 142 GLU PRO ASN SER PRO ILE ARG SER SER ALA PHE ASP ARG SEQRES 11 C 142 LYS VAL GLN PHE LEU GLY LYS LYS HIS LEU LEU SER SEQRES 1 D 182 GLY ALA MET SER ARG GLN ALA ASN ARG GLY THR GLU SER SEQRES 2 D 182 LYS LYS MET SER SER GLU LEU PHE THR LEU THR TYR GLY SEQRES 3 D 182 ALA LEU VAL THR GLN LEU CYS LYS ASP TYR GLU ASN ASP SEQRES 4 D 182 GLU ASP VAL ASN LYS GLN LEU ASP ARG MET GLY TYR ASN SEQRES 5 D 182 ILE GLY VAL ARG LEU ILE GLU ASP PHE LEU ALA ARG SER SEQRES 6 D 182 ASN VAL GLY ARG CYS HIS ASP PHE ARG GLU THR ALA ASP SEQRES 7 D 182 VAL ILE ALA LYS VAL ALA PHE LYS MET TYR LEU GLY ILE SEQRES 8 D 182 THR PRO SER ILE THR ASN TRP SER PRO ALA GLY ASP GLU SEQRES 9 D 182 PHE SER LEU ILE LEU GLU ASN ASN PRO LEU VAL ASP PHE SEQRES 10 D 182 VAL GLU LEU PRO ASP ASN HIS SER ALA LEU ILE TYR SER SEQRES 11 D 182 ASN LEU LEU CYS GLY VAL LEU ARG GLY ALA LEU GLU MET SEQRES 12 D 182 VAL GLN MET ALA VAL GLU ALA LYS PHE VAL GLN ASP THR SEQRES 13 D 182 LEU LYS GLY ASP GLY VAL THR GLU ILE ARG MET ARG PHE SEQRES 14 D 182 ILE ARG ARG ILE GLU ASP ASN LEU PRO ALA GLY GLU GLU SEQRES 1 E 182 GLY ALA MET SER ARG GLN ALA ASN ARG GLY THR GLU SER SEQRES 2 E 182 LYS LYS MET SER SER GLU LEU PHE THR LEU THR TYR GLY SEQRES 3 E 182 ALA LEU VAL THR GLN LEU CYS LYS ASP TYR GLU ASN ASP SEQRES 4 E 182 GLU ASP VAL ASN LYS GLN LEU ASP ARG MET GLY TYR ASN SEQRES 5 E 182 ILE GLY VAL ARG LEU ILE GLU ASP PHE LEU ALA ARG SER SEQRES 6 E 182 ASN VAL GLY ARG CYS HIS ASP PHE ARG GLU THR ALA ASP SEQRES 7 E 182 VAL ILE ALA LYS VAL ALA PHE LYS MET TYR LEU GLY ILE SEQRES 8 E 182 THR PRO SER ILE THR ASN TRP SER PRO ALA GLY ASP GLU SEQRES 9 E 182 PHE SER LEU ILE LEU GLU ASN ASN PRO LEU VAL ASP PHE SEQRES 10 E 182 VAL GLU LEU PRO ASP ASN HIS SER ALA LEU ILE TYR SER SEQRES 11 E 182 ASN LEU LEU CYS GLY VAL LEU ARG GLY ALA LEU GLU MET SEQRES 12 E 182 VAL GLN MET ALA VAL GLU ALA LYS PHE VAL GLN ASP THR SEQRES 13 E 182 LEU LYS GLY ASP GLY VAL THR GLU ILE ARG MET ARG PHE SEQRES 14 E 182 ILE ARG ARG ILE GLU ASP ASN LEU PRO ALA GLY GLU GLU SEQRES 1 F 188 MET GLU VAL ARG PHE THR ARG GLY LYS SER ALA ILE LEU SEQRES 2 F 188 GLU ARG SER LEU THR ARG PRO LYS THR GLU VAL SER VAL SEQRES 3 F 188 SER ALA PHE ALA LEU LEU PHE SER GLU MET VAL GLN TYR SEQRES 4 F 188 CYS GLN SER ARG VAL TYR SER VAL SER GLU LEU GLN ALA SEQRES 5 F 188 ARG LEU ALA ASP MET GLY GLN GLY VAL GLY ALA SER LEU SEQRES 6 F 188 LEU ASP VAL LEU VAL MET ARG GLU LYS ASN GLY LYS ARG SEQRES 7 F 188 GLU THR LYS VAL LEU ASN ILE LEU LEU PHE ILE LYS VAL SEQRES 8 F 188 ASN VAL TRP LYS ALA LEU PHE GLY LYS GLU ALA ASP LYS SEQRES 9 F 188 LEU GLU GLN ALA ASN ASP ASP ASP LYS THR TYR TYR ILE SEQRES 10 F 188 ILE GLU LYS GLU PRO LEU ILE ASN ALA TYR ILE SER VAL SEQRES 11 F 188 PRO LYS GLU ASN SER THR LEU ASN CYS ALA ALA PHE THR SEQRES 12 F 188 GLY GLY ILE VAL GLU ALA ILE LEU THR HIS SER GLY PHE SEQRES 13 F 188 PRO ALA LYS VAL THR VAL HIS TRP HIS LYS GLY THR THR SEQRES 14 F 188 LEU MET ILE LYS PHE ASP GLU SER VAL ILE ALA ARG ASP SEQRES 15 F 188 LYS ALA LEU ASP GLY ARG HET PLM D1068 17 HET PLM E1068 17 HETNAM PLM PALMITIC ACID FORMUL 7 PLM 2(C16 H32 O2) FORMUL 8 HOH *215(H2 O) HELIX 1 1 LYS A 27 GLU A 29 5 3 HELIX 2 2 SER A 30 MET A 53 1 24 HELIX 3 3 TRP A 54 SER A 56 5 3 HELIX 4 4 GLN A 91 ASN A 112 1 22 HELIX 5 5 SER A 123 LEU A 138 1 16 HELIX 6 6 VAL B 26 SER B 42 1 17 HELIX 7 7 SER B 46 LYS B 74 1 29 HELIX 8 8 LYS B 81 VAL B 91 1 11 HELIX 9 9 VAL B 91 GLY B 99 1 9 HELIX 10 10 PRO B 122 TYR B 127 5 6 HELIX 11 11 LEU B 137 SER B 154 1 18 HELIX 12 12 ASP B 175 LEU B 185 1 11 HELIX 13 13 ARG C 35 LEU C 55 1 21 HELIX 14 14 GLN C 91 MET C 111 1 21 HELIX 15 15 SER C 123 LEU C 138 1 16 HELIX 16 16 SER D 16 TYR D 34 1 19 HELIX 17 17 ASN D 36 ALA D 61 1 26 HELIX 18 18 ASP D 70 VAL D 81 1 12 HELIX 19 19 VAL D 81 LEU D 87 1 7 HELIX 20 20 ASN D 110 ASP D 114 5 5 HELIX 21 21 PRO D 119 SER D 123 5 5 HELIX 22 22 ASN D 129 MET D 141 1 13 HELIX 23 23 ASP D 153 GLY D 157 5 5 HELIX 24 24 SER E 16 TYR E 34 1 19 HELIX 25 25 ASN E 36 ARG E 62 1 27 HELIX 26 26 ASP E 70 VAL E 81 1 12 HELIX 27 27 VAL E 81 LEU E 87 1 7 HELIX 28 28 ASN E 110 ASP E 114 5 5 HELIX 29 29 PRO E 119 SER E 123 5 5 HELIX 30 30 ASN E 129 MET E 141 1 13 HELIX 31 31 ASP E 153 GLY E 157 5 5 HELIX 32 32 SER F 25 SER F 42 1 18 HELIX 33 33 SER F 46 LYS F 74 1 29 HELIX 34 34 LYS F 81 VAL F 91 1 11 HELIX 35 35 VAL F 91 GLY F 99 1 9 HELIX 36 36 PRO F 122 TYR F 127 5 6 HELIX 37 37 LEU F 137 SER F 154 1 18 HELIX 38 38 ASP F 175 ASP F 186 1 12 SHEET 1 AA 5 PRO A 16 PHE A 22 0 SHEET 2 AA 5 PHE A 5 VAL A 10 -1 O PHE A 5 N PHE A 22 SHEET 3 AA 5 ARG A 82 HIS A 87 -1 O ARG A 82 N VAL A 10 SHEET 4 AA 5 TRP A 70 VAL A 76 -1 O PHE A 71 N HIS A 87 SHEET 5 AA 5 TYR A 60 PHE A 67 -1 N LEU A 61 O ALA A 74 SHEET 1 BA 2 GLU B 23 SER B 25 0 SHEET 2 BA 2 LYS E 13 SER E 15 -1 O MET E 14 N VAL B 24 SHEET 1 BB 4 LYS B 104 ALA B 108 0 SHEET 2 BB 4 ASP B 111 GLU B 119 -1 N ASP B 111 O ALA B 108 SHEET 3 BB 4 THR B 168 PHE B 174 -1 O THR B 168 N GLU B 119 SHEET 4 BB 4 ALA B 158 TRP B 164 -1 O LYS B 159 N LYS B 173 SHEET 1 CA 5 PRO C 16 PHE C 22 0 SHEET 2 CA 5 PHE C 5 VAL C 10 -1 O PHE C 5 N PHE C 22 SHEET 3 CA 5 ARG C 82 HIS C 87 -1 O ARG C 82 N VAL C 10 SHEET 4 CA 5 TRP C 70 VAL C 76 -1 O PHE C 71 N HIS C 87 SHEET 5 CA 5 TYR C 60 PHE C 67 -1 N LEU C 61 O ALA C 74 SHEET 1 DA 2 MET D 14 SER D 15 0 SHEET 2 DA 2 GLU F 23 VAL F 24 -1 O VAL F 24 N MET D 14 SHEET 1 DB 4 SER D 92 THR D 94 0 SHEET 2 DB 4 GLU D 102 LEU D 107 -1 O SER D 104 N THR D 94 SHEET 3 DB 4 THR D 161 ARG D 170 -1 O THR D 161 N LEU D 107 SHEET 4 DB 4 MET D 144 GLN D 152 -1 O ALA D 145 N ILE D 168 SHEET 1 EA 4 SER E 92 THR E 94 0 SHEET 2 EA 4 GLU E 102 LEU E 107 -1 O SER E 104 N THR E 94 SHEET 3 EA 4 THR E 161 ARG E 170 -1 O THR E 161 N LEU E 107 SHEET 4 EA 4 MET E 144 GLN E 152 -1 O ALA E 145 N ILE E 168 SHEET 1 FA 4 LYS F 104 GLN F 107 0 SHEET 2 FA 4 THR F 114 GLU F 119 -1 O TYR F 116 N GLU F 106 SHEET 3 FA 4 THR F 168 PHE F 174 -1 O THR F 168 N GLU F 119 SHEET 4 FA 4 ALA F 158 TRP F 164 -1 O LYS F 159 N LYS F 173 LINK SG CYS D 68 C1 PLM D1068 1555 1555 1.83 LINK SG CYS E 68 C1 PLM E1068 1555 1555 1.83 SITE 1 AC1 5 PHE D 59 CYS D 68 ALA D 82 PHE D 83 SITE 2 AC1 5 LEU D 87 SITE 1 AC2 3 PHE E 59 CYS E 68 TYR E 86 CRYST1 232.211 63.063 72.018 90.00 91.72 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004306 0.000000 0.000129 0.00000 SCALE2 0.000000 0.015857 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013892 0.00000