PDB Short entry for 2J7T HEADER TRANSFERASE 17-OCT-06 2J7T TITLE CRYSTAL STRUCTURE OF HUMAN SERINE THREONINE KINASE-10 BOUND TO SU11274 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE 10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 18-317; COMPND 5 SYNONYM: LYMPHOCYTE-ORIENTED KINASE, SERINE-THREONINE PROTEIN KINASE- COMPND 6 10; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS KINASE, TRANSFERASE, ATP-BINDING, CELL CYCLE PROGRESSION, KEYWDS 2 PHOSPHORYLATION, DISEASE MUTATION, NUCLEOTIDE- BINDING, LYMPHOCYTE KEYWDS 3 ORIENTED KINASE (LOK), SERINE/THREONINE- PROTEIN KINASE, KEYWDS 4 SERINE/THREONINE KINASE (STK10A) EXPDTA X-RAY DIFFRACTION AUTHOR A.C.W.PIKE,P.RELLOS,O.FEDOROV,S.DAS,J.DEBRECZENI,F.SOBOTT,S.WATT, AUTHOR 2 P.SAVITSKY,J.ESWARAN,A.P.TURNBULL,E.PAPAGRIGORIOU,E.UGOCHUKWA, AUTHOR 3 F.GORREC,C.C.UMEANO,F.VON DELFT,C.H.ARROWSMITH,A.EDWARDS,J.WEIGELT, AUTHOR 4 M.SUNDSTROM,S.KNAPP REVDAT 5 13-DEC-23 2J7T 1 REMARK LINK REVDAT 4 27-JUN-18 2J7T 1 LINK REVDAT 3 13-JUL-11 2J7T 1 VERSN REVDAT 2 24-FEB-09 2J7T 1 VERSN REVDAT 1 07-NOV-06 2J7T 0 JRNL AUTH A.C.W.PIKE,P.RELLOS,F.H.NIESEN,A.TURNBULL,A.W.OLIVER, JRNL AUTH 2 S.A.PARKER,B.E.TURK,L.H.PEARL,S.KNAPP JRNL TITL ACTIVATION SEGMENT DIMERIZATION: A MECHANISM FOR KINASE JRNL TITL 2 AUTOPHOSPHORYLATION OF NON-CONSENSUS SITES. JRNL REF EMBO J. V. 27 704 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18239682 JRNL DOI 10.1038/EMBOJ.2008.8 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1308 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1768 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 130 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 28.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : 2.17000 REMARK 3 B33 (A**2) : -1.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.399 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2254 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1455 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3074 ; 1.236 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3547 ; 1.329 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 5.740 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;29.822 ;24.828 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;13.425 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;25.418 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2490 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 409 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 466 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1500 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1101 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1093 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 111 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.508 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 45 ; 0.246 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1463 ; 0.567 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2276 ; 0.878 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 927 ; 1.413 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 798 ; 2.232 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6824 45.0702 18.9690 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: -0.1861 REMARK 3 T33: 0.0649 T12: 0.2131 REMARK 3 T13: 0.0273 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 3.1009 L22: 4.4656 REMARK 3 L33: 6.3464 L12: -0.4803 REMARK 3 L13: 0.4614 L23: -1.2544 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.2518 S13: 0.8882 REMARK 3 S21: -0.4543 S22: -0.0563 S23: -0.1357 REMARK 3 S31: -1.8438 S32: -0.3946 S33: 0.0747 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): -33.4301 21.1705 -2.5168 REMARK 3 T TENSOR REMARK 3 T11: -0.1795 T22: 0.1016 REMARK 3 T33: -0.1831 T12: -0.0396 REMARK 3 T13: -0.0408 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 13.0572 L22: 3.4439 REMARK 3 L33: 15.1814 L12: 0.1638 REMARK 3 L13: 11.4642 L23: 1.3747 REMARK 3 S TENSOR REMARK 3 S11: -0.3818 S12: -1.3126 S13: 0.7671 REMARK 3 S21: 0.4308 S22: 0.0870 S23: -0.1915 REMARK 3 S31: -0.4614 S32: 0.0719 S33: 0.2949 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 188 REMARK 3 RESIDUE RANGE : A 213 A 317 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3276 19.9270 19.1323 REMARK 3 T TENSOR REMARK 3 T11: -0.2863 T22: -0.1979 REMARK 3 T33: -0.2407 T12: 0.0293 REMARK 3 T13: -0.0179 T23: -0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.4371 L22: 1.3964 REMARK 3 L33: 5.2451 L12: 0.1696 REMARK 3 L13: 0.3048 L23: 0.2861 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: 0.1901 S13: -0.1331 REMARK 3 S21: -0.0141 S22: -0.0377 S23: 0.0432 REMARK 3 S31: 0.2289 S32: -0.3311 S33: -0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2J7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1290030248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 56.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2J51 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 45% PEG300, 0.24M CALCIUM ACETATE, REMARK 280 0.1M SODIUM CACODYLATE PH6.5, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.59600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.48000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.90850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.59600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.48000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.90850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.59600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.48000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.90850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.59600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.48000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.90850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -49.19200 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 MET A 17 REMARK 465 ARG A 18 REMARK 465 LYS A 19 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 GLU A 22 REMARK 465 TYR A 23 REMARK 465 GLU A 24 REMARK 465 THR A 69 REMARK 465 LYS A 70 REMARK 465 SER A 71 REMARK 465 GLU A 72 REMARK 465 ARG A 189 REMARK 465 ASP A 190 REMARK 465 SER A 191 REMARK 465 PHE A 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 26 CG1 CG2 REMARK 470 ARG A 27 CD NE CZ NH1 NH2 REMARK 470 LEU A 30 CD1 CD2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 VAL A 35 CG1 CG2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 LYS A 54 CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 65 NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ILE A 79 CD1 REMARK 470 ILE A 82 CD1 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 LYS A 95 CD CE NZ REMARK 470 HIS A 102 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 GLY A 104 C O REMARK 470 LEU A 123 CD1 CD2 REMARK 470 ARG A 152 CD NE CZ NH1 NH2 REMARK 470 ILE A 154 CD1 REMARK 470 LYS A 181 CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ILE A 193 N CB CG1 CG2 CD1 REMARK 470 MET A 205 CE REMARK 470 LYS A 210 CD CE NZ REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 MET A 243 CG SD CE REMARK 470 LEU A 247 CD1 CD2 REMARK 470 LYS A 248 NZ REMARK 470 LYS A 251 CD CE NZ REMARK 470 LYS A 272 CE NZ REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 313 O HOH A 2125 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 29 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 29 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 157 41.43 -144.62 REMARK 500 ASP A 175 79.65 61.18 REMARK 500 ILE A 233 -44.69 69.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1322 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 O REMARK 620 2 GLU A 313 OE2 78.2 REMARK 620 3 HOH A2028 O 79.9 142.7 REMARK 620 4 HOH A2126 O 143.0 81.7 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1318 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 GLU A 168 OE2 50.3 REMARK 620 3 GLU A 316 OE2 24.4 36.3 REMARK 620 4 HOH A2054 O 33.5 31.2 9.4 REMARK 620 5 HOH A2125 O 27.5 37.2 3.7 7.6 REMARK 620 6 HOH A2127 O 27.3 31.2 5.1 6.7 6.6 REMARK 620 7 HOH A2128 O 29.6 39.1 6.8 8.2 3.1 9.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 234 OE1 REMARK 620 2 GLU A 234 OE2 46.7 REMARK 620 3 HOH A2029 O 89.5 83.8 REMARK 620 4 HOH A2078 O 74.4 120.3 87.0 REMARK 620 5 HOH A2079 O 112.1 67.3 66.7 152.4 REMARK 620 6 HOH A2080 O 71.4 94.5 154.4 71.8 135.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 313 OE1 REMARK 620 2 GLU A 313 OE2 47.9 REMARK 620 3 GLU A 316 OE1 94.0 89.6 REMARK 620 4 GLU A 316 OE2 60.1 88.5 46.2 REMARK 620 5 HOH A2055 O 133.5 162.7 73.2 81.1 REMARK 620 6 HOH A2128 O 74.5 120.9 108.7 70.0 68.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 332 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2013 O REMARK 620 2 HOH A2014 O 72.6 REMARK 620 3 HOH A2016 O 85.2 108.2 REMARK 620 4 HOH A2019 O 146.5 93.7 128.3 REMARK 620 5 HOH A2058 O 134.6 85.1 64.6 71.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 333 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2020 O REMARK 620 2 HOH A2051 O 156.6 REMARK 620 3 HOH A2059 O 59.8 121.9 REMARK 620 4 HOH A2129 O 102.3 101.1 87.2 REMARK 620 5 HOH A2130 O 71.6 113.8 124.0 77.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2039 O REMARK 620 2 HOH A2108 O 164.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 274 A1324 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE DISCREPANCIES DUE TO CLONING ARTEFACTS DBREF 2J7T A 16 17 PDB 2J7T 2J7T 16 17 DBREF 2J7T A 18 317 UNP O94804 STK10_HUMAN 18 317 SEQRES 1 A 302 SER MET ARG LYS SER ARG GLU TYR GLU HIS VAL ARG ARG SEQRES 2 A 302 ASP LEU ASP PRO ASN GLU VAL TRP GLU ILE VAL GLY GLU SEQRES 3 A 302 LEU GLY ASP GLY ALA PHE GLY LYS VAL TYR LYS ALA LYS SEQRES 4 A 302 ASN LYS GLU THR GLY ALA LEU ALA ALA ALA LYS VAL ILE SEQRES 5 A 302 GLU THR LYS SER GLU GLU GLU LEU GLU ASP TYR ILE VAL SEQRES 6 A 302 GLU ILE GLU ILE LEU ALA THR CYS ASP HIS PRO TYR ILE SEQRES 7 A 302 VAL LYS LEU LEU GLY ALA TYR TYR HIS ASP GLY LYS LEU SEQRES 8 A 302 TRP ILE MET ILE GLU PHE CYS PRO GLY GLY ALA VAL ASP SEQRES 9 A 302 ALA ILE MET LEU GLU LEU ASP ARG GLY LEU THR GLU PRO SEQRES 10 A 302 GLN ILE GLN VAL VAL CYS ARG GLN MET LEU GLU ALA LEU SEQRES 11 A 302 ASN PHE LEU HIS SER LYS ARG ILE ILE HIS ARG ASP LEU SEQRES 12 A 302 LYS ALA GLY ASN VAL LEU MET THR LEU GLU GLY ASP ILE SEQRES 13 A 302 ARG LEU ALA ASP PHE GLY VAL SER ALA LYS ASN LEU LYS SEQRES 14 A 302 THR LEU GLN LYS ARG ASP SER PHE ILE GLY THR PRO TYR SEQRES 15 A 302 TRP MET ALA PRO GLU VAL VAL MET CYS GLU THR MET LYS SEQRES 16 A 302 ASP THR PRO TYR ASP TYR LYS ALA ASP ILE TRP SER LEU SEQRES 17 A 302 GLY ILE THR LEU ILE GLU MET ALA GLN ILE GLU PRO PRO SEQRES 18 A 302 HIS HIS GLU LEU ASN PRO MET ARG VAL LEU LEU LYS ILE SEQRES 19 A 302 ALA LYS SER ASP PRO PRO THR LEU LEU THR PRO SER LYS SEQRES 20 A 302 TRP SER VAL GLU PHE ARG ASP PHE LEU LYS ILE ALA LEU SEQRES 21 A 302 ASP LYS ASN PRO GLU THR ARG PRO SER ALA ALA GLN LEU SEQRES 22 A 302 LEU GLU HIS PRO PHE VAL SER SER ILE THR SER ASN LYS SEQRES 23 A 302 ALA LEU ARG GLU LEU VAL ALA GLU ALA LYS ALA GLU VAL SEQRES 24 A 302 MET GLU GLU HET CA A 332 1 HET CA A 333 1 HET CA A1318 1 HET CA A1319 1 HET CA A1320 1 HET CA A1321 1 HET CA A1322 1 HET ACT A1323 4 HET 274 A1324 46 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM 274 (3Z)-N-(3-CHLOROPHENYL)-3-({3,5-DIMETHYL-4-[(4- HETNAM 2 274 METHYLPIPERAZIN-1-YL)CARBONYL]-1H-PYRROL-2- HETNAM 3 274 YL}METHYLENE)-N-METHYL-2-OXOINDOLINE-5-SULFONAMIDE HETSYN 274 MET KINASE INHIBITOR FORMUL 2 CA 7(CA 2+) FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 274 C28 H30 CL N5 O4 S FORMUL 11 HOH *130(H2 O) HELIX 1 1 ASP A 31 GLU A 34 5 4 HELIX 2 2 GLU A 74 CYS A 88 1 15 HELIX 3 3 VAL A 118 ASP A 126 1 9 HELIX 4 4 THR A 130 LYS A 151 1 22 HELIX 5 5 LYS A 159 GLY A 161 5 3 HELIX 6 6 PHE A 176 LYS A 188 1 13 HELIX 7 7 THR A 195 MET A 199 5 5 HELIX 8 8 ALA A 200 MET A 209 1 10 HELIX 9 9 TYR A 216 ILE A 233 1 18 HELIX 10 10 ASN A 241 SER A 252 1 12 HELIX 11 11 THR A 259 TRP A 263 5 5 HELIX 12 12 SER A 264 LEU A 275 1 12 HELIX 13 13 SER A 284 LEU A 289 1 6 HELIX 14 14 ASN A 300 MET A 315 1 16 SHEET 1 AA 5 TRP A 36 GLY A 43 0 SHEET 2 AA 5 VAL A 50 ASN A 55 -1 O VAL A 50 N LEU A 42 SHEET 3 AA 5 LEU A 61 ILE A 67 -1 O ALA A 62 N ALA A 53 SHEET 4 AA 5 LEU A 106 GLU A 111 -1 O LEU A 106 N ILE A 67 SHEET 5 AA 5 LEU A 96 TYR A 101 -1 N LEU A 97 O MET A 109 SHEET 1 AB 3 GLY A 116 ALA A 117 0 SHEET 2 AB 3 VAL A 163 MET A 165 -1 N MET A 165 O GLY A 116 SHEET 3 AB 3 ILE A 171 LEU A 173 -1 O ARG A 172 N LEU A 164 SSBOND 1 CYS A 206 CYS A 206 1555 3455 2.06 LINK O GLU A 124 CA CA A1322 1555 1555 2.68 LINK OE1 GLU A 168 CA CA A1318 1555 8455 2.50 LINK OE2 GLU A 168 CA CA A1318 1555 8455 2.68 LINK OE1 GLU A 234 CA CA A1320 1555 1555 2.76 LINK OE2 GLU A 234 CA CA A1320 1555 1555 2.77 LINK OE1 GLU A 313 CA CA A1319 1555 1555 2.88 LINK OE2 GLU A 313 CA CA A1319 1555 1555 2.40 LINK OE2 GLU A 313 CA CA A1322 1555 1555 3.20 LINK OE2 GLU A 316 CA CA A1318 1555 1555 2.20 LINK OE1 GLU A 316 CA CA A1319 1555 1555 2.71 LINK OE2 GLU A 316 CA CA A1319 1555 1555 2.86 LINK CA CA A 332 O HOH A2013 1555 1555 2.51 LINK CA CA A 332 O HOH A2014 1555 1555 2.56 LINK CA CA A 332 O HOH A2016 1555 1555 2.53 LINK CA CA A 332 O HOH A2019 1555 1555 2.48 LINK CA CA A 332 O HOH A2058 1555 1555 2.56 LINK CA CA A 333 O HOH A2020 1555 1555 2.39 LINK CA CA A 333 O HOH A2051 1555 1555 2.32 LINK CA CA A 333 O HOH A2059 1555 1555 3.07 LINK CA CA A 333 O HOH A2129 1555 1555 2.43 LINK CA CA A 333 O HOH A2130 1555 1555 2.61 LINK CA CA A1318 O HOH A2054 1555 8555 2.37 LINK CA CA A1318 O HOH A2125 1555 1555 2.43 LINK CA CA A1318 O HOH A2127 1555 1555 2.49 LINK CA CA A1318 O HOH A2128 1555 1555 2.61 LINK CA CA A1319 O HOH A2055 1555 8555 2.44 LINK CA CA A1319 O HOH A2128 1555 1555 3.01 LINK CA CA A1320 O HOH A2029 1555 1555 3.12 LINK CA CA A1320 O HOH A2078 1555 1555 2.78 LINK CA CA A1320 O HOH A2079 1555 1555 2.98 LINK CA CA A1320 O HOH A2080 1555 1555 2.49 LINK CA CA A1321 O HOH A2039 1555 1555 2.20 LINK CA CA A1321 O HOH A2108 1555 1555 2.12 LINK CA CA A1322 O HOH A2028 1555 1555 2.27 LINK CA CA A1322 O HOH A2126 1555 1555 2.23 CISPEP 1 THR A 212 PRO A 213 0 -5.00 SITE 1 AC1 5 HOH A2013 HOH A2014 HOH A2016 HOH A2019 SITE 2 AC1 5 HOH A2058 SITE 1 AC2 5 HOH A2020 HOH A2051 HOH A2059 HOH A2129 SITE 2 AC2 5 HOH A2130 SITE 1 AC3 6 GLU A 168 GLU A 316 HOH A2054 HOH A2125 SITE 2 AC3 6 HOH A2127 HOH A2128 SITE 1 AC4 4 GLU A 313 GLU A 316 HOH A2055 HOH A2128 SITE 1 AC5 4 GLU A 234 HOH A2078 HOH A2079 HOH A2080 SITE 1 AC6 3 GLN A 135 HOH A2039 HOH A2108 SITE 1 AC7 4 GLU A 124 GLU A 313 HOH A2028 HOH A2126 SITE 1 AC8 2 THR A 298 VAL A 314 SITE 1 AC9 14 LEU A 42 ALA A 63 GLU A 81 ILE A 108 SITE 2 AC9 14 ILE A 110 GLU A 111 PHE A 112 CYS A 113 SITE 3 AC9 14 GLY A 116 ALA A 117 LEU A 164 ASP A 175 SITE 4 AC9 14 HOH A2007 HOH A2129 CRYST1 49.192 112.960 133.817 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007473 0.00000