PDB Short entry for 2JAV
HEADER    TRANSFERASE                             30-NOV-06   2JAV              
TITLE     HUMAN KINASE WITH PYRROLE-INDOLINONE LIGAND                           
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE NEK2;                      
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: KINASE DOMAIN, RESIDUES 1-271;                             
COMPND   5 SYNONYM: NIMA-RELATED PROTEIN KINASE 2, NIMA-LIKE PROTEIN KINASE 1,  
COMPND   6 HSPK 21, NEVER IN MITOSIS GENE A-RELATED KINASE 2;                   
COMPND   7 ENGINEERED: YES;                                                     
COMPND   8 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   8 EXPRESSION_SYSTEM_PLASMID: PET22B                                    
KEYWDS    TRANSFERASE, PHOSPHORYLATION, NUCLEOTIDE-BINDING, ATP-BINDING, CELL   
KEYWDS   2 DIVISION, METAL-BINDING, NUCLEAR PROTEIN, SERINE/THREONINE-PROTEIN   
KEYWDS   3 KINASE, SERINE/THREONINE PROTEIN KINASE, KINASE, MEIOSIS, MITOSIS,   
KEYWDS   4 MAGNESIUM, CELL CYCLE                                                
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.C.W.PIKE,P.RELLOS,S.DAS,O.FEDOROV,E.PAPAGRIGORIOU,J.E.DEBRECZENI,   
AUTHOR   2 A.P.TURNBULL,F.GORREC,J.BRAY,M.SUNDSTROM,C.H.ARROWSMITH,A.EDWARDS,   
AUTHOR   3 J.WEIGELT,F.VON DELFT,S.KNAPP                                        
REVDAT   6   08-MAY-19 2JAV    1       REMARK                                   
REVDAT   5   24-JAN-18 2JAV    1       AUTHOR                                   
REVDAT   4   13-JUL-11 2JAV    1       VERSN                                    
REVDAT   3   24-FEB-09 2JAV    1       VERSN                                    
REVDAT   2   06-MAR-07 2JAV    1       JRNL                                     
REVDAT   1   04-DEC-06 2JAV    0                                                
SPRSDE     04-DEC-06 2JAV      2CL1                                             
JRNL        AUTH   P.RELLOS,F.J.IVINS,J.E.BAXTER,A.C.W.PIKE,T.J.NOTT,           
JRNL        AUTH 2 D.-M.PARKINSON,S.DAS,S.HOWELL,O.FEDOROV,Q.Y.SHEN,A.M.FRY,    
JRNL        AUTH 3 S.KNAPP,S.J.SMERDON                                          
JRNL        TITL   STRUCTURE AND REGULATION OF THE HUMAN NEK2 CENTROSOMAL       
JRNL        TITL 2 KINASE                                                       
JRNL        REF    J.BIOL.CHEM.                  V. 282  6833 2007              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   17197699                                                     
JRNL        DOI    10.1074/JBC.M609721200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.20 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 30.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.7                           
REMARK   3   NUMBER OF REFLECTIONS             : 14883                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.217                           
REMARK   3   R VALUE            (WORKING SET) : 0.214                           
REMARK   3   FREE R VALUE                     : 0.277                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 796                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.20                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.26                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 1019                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2370                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 62                           
REMARK   3   BIN FREE R VALUE                    : 0.2630                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2014                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 23                                      
REMARK   3   SOLVENT ATOMS            : 107                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                     
REMARK   3   FROM WILSON PLOT           (A**2) : 32.55                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 33.55                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 0.93000                                              
REMARK   3    B22 (A**2) : -1.95000                                             
REMARK   3    B33 (A**2) : 0.65000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : -1.77000                                             
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.286         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.237         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.164         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.818        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.928                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.883                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2119 ; 0.010 ; 0.021       
REMARK   3   BOND LENGTHS OTHERS               (A):  2858 ; 1.225 ; 1.980       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   249 ; 5.514 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   103 ;34.673 ;23.204       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   380 ;16.232 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    18 ;17.300 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   304 ; 0.078 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  1604 ; 0.004 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):   932 ; 0.187 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  1423 ; 0.295 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   117 ; 0.136 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    34 ; 0.168 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):    10 ; 0.177 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1297 ; 0.552 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  2019 ; 0.895 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):   970 ; 1.238 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):   839 ; 1.922 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 2                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A     3        A    90                          
REMARK   3    ORIGIN FOR THE GROUP (A):  -3.9591   2.2859  10.5005              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.4429 T22:   0.0551                                     
REMARK   3      T33:   0.1932 T12:   0.0085                                     
REMARK   3      T13:  -0.3760 T23:  -0.1895                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:  13.4988 L22:   4.4903                                     
REMARK   3      L33:   4.6756 L12:  -3.1466                                     
REMARK   3      L13:   4.8513 L23:  -1.4348                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   1.0386 S12:   1.6194 S13:  -1.5073                       
REMARK   3      S21:  -1.4248 S22:  -0.4728 S23:   0.6732                       
REMARK   3      S31:   0.7313 S32:   0.2933 S33:  -0.5658                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 1                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A    91        A   279                          
REMARK   3    ORIGIN FOR THE GROUP (A):  12.8160  19.1608  22.8707              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:  -0.1575 T22:  -0.1417                                     
REMARK   3      T33:  -0.2082 T12:   0.0032                                     
REMARK   3      T13:   0.0174 T23:   0.0179                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   2.5486 L22:   4.3558                                     
REMARK   3      L33:   2.0580 L12:   0.0526                                     
REMARK   3      L13:   0.0378 L23:   0.2130                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:   0.0445 S12:   0.3536 S13:   0.0935                       
REMARK   3      S21:  -0.5251 S22:  -0.0189 S23:   0.0503                       
REMARK   3      S31:  -0.0078 S32:  -0.0305 S33:  -0.0256                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS.DIETHYLAMINO TAIL OF LIGAND IS DISORDERED AND HAS NOT     
REMARK   3  BEEN INCLUDED IN THE FINAL MODEL.                                   
REMARK   4                                                                      
REMARK   4 2JAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-06.                  
REMARK 100 THE DEPOSITION ID IS D_1290030685.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 24-MAR-06                          
REMARK 200  TEMPERATURE           (KELVIN) : 100.0                              
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SLS                                
REMARK 200  BEAMLINE                       : X10SA                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.95                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 15620                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.200                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 65.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.7                               
REMARK 200  DATA REDUNDANCY                : 8.200                              
REMARK 200  R MERGE                    (I) : 0.09000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 16.8000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.32                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 98.1                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 6.30                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.48000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.400                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: PDB ENTRY 1OL7                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 48.52                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG6000, 200 MM MGCL2. SITTING       
REMARK 280  DROPS, 150NL AND 50NL PROTEIN AND RESERVOIR MIX., VAPOR             
REMARK 280  DIFFUSION, SITTING DROP                                             
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1                         
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,Y+1/2,-Z                                             
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000  1.000000  0.000000       28.46200            
REMARK 290   SMTRY3   2  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 400                                                                      
REMARK 400 COMPOUND                                                             
REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 175 TO ALA                        
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 465     PRO A     2                                                      
REMARK 465     ARG A    77                                                      
REMARK 465     THR A    78                                                      
REMARK 465     ASN A    79                                                      
REMARK 465     THR A    80                                                      
REMARK 465     ASP A   132                                                      
REMARK 465     GLY A   133                                                      
REMARK 465     GLY A   134                                                      
REMARK 465     HIS A   135                                                      
REMARK 465     THR A   136                                                      
REMARK 465     VAL A   137                                                      
REMARK 465     LEU A   138                                                      
REMARK 465     HIS A   139                                                      
REMARK 465     ARG A   140                                                      
REMARK 465     ASN A   167                                                      
REMARK 465     HIS A   168                                                      
REMARK 465     ASP A   169                                                      
REMARK 465     THR A   170                                                      
REMARK 465     SER A   171                                                      
REMARK 465     PHE A   172                                                      
REMARK 465     ALA A   173                                                      
REMARK 465     LYS A   174                                                      
REMARK 465     ALA A   175                                                      
REMARK 465     PHE A   176                                                      
REMARK 465     VAL A   177                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     SER A   3    OG                                                  
REMARK 470     ARG A   4    CB   CG   CD   NE   CZ   NH1  NH2                   
REMARK 470     GLU A   6    OE1  OE2                                            
REMARK 470     SER A  18    OG                                                  
REMARK 470     LYS A  28    CG   CD   CE   NZ                                   
REMARK 470     ASP A  30    CG   OD1  OD2                                       
REMARK 470     MET A  44    CG   SD   CE                                        
REMARK 470     LYS A  49    CG   CD   CE   NZ                                   
REMARK 470     GLN A  50    CG   CD   OE1  NE2                                  
REMARK 470     MET A  51    CG   SD   CE                                        
REMARK 470     LEU A  52    CG   CD1  CD2                                       
REMARK 470     ASN A  57    CG   OD1  ND2                                       
REMARK 470     LEU A  58    CG   CD1  CD2                                       
REMARK 470     LEU A  59    CG   CD1  CD2                                       
REMARK 470     GLU A  61    OE1  OE2                                            
REMARK 470     LYS A  63    CD   CE   NZ                                        
REMARK 470     ARG A  73    NE   CZ   NH1  NH2                                  
REMARK 470     LYS A 100    NZ                                                  
REMARK 470     ARG A 130    CD   NE   CZ   NH1  NH2                             
REMARK 470     ARG A 190    CD   NE   CZ   NH1  NH2                             
REMARK 470     MET A 191    SD   CE                                             
REMARK 470     LYS A 222    NZ                                                  
REMARK 470     LYS A 227    NZ                                                  
REMARK 470     GLU A 230    CD   OE1  OE2                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    SER A   3   N     SER A   3   CA      0.125                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A 181      -49.58     67.83                                   
REMARK 500    SER A 184      150.87    -49.74                                   
REMARK 500    LEU A 212       17.11     58.71                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5Z5 A1280                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2CL1   RELATED DB: PDB                                   
REMARK 900 HUMAN KINASE WITH PYRROLE-INDOLINONE LIGAND                          
REMARK 999                                                                      
REMARK 999 SEQUENCE                                                             
REMARK 999 C-TERMINAL HEXA-HISTIDINE TAG                                        
DBREF  2JAV A    1   271  UNP    P51955   NEK2_HUMAN       1    271             
DBREF  2JAV A  272   279  PDB    2JAV     2JAV           272    279             
SEQADV 2JAV ALA A  175  UNP  P51955    THR   175 ENGINEERED MUTATION            
SEQRES   1 A  279  MET PRO SER ARG ALA GLU ASP TYR GLU VAL LEU TYR THR          
SEQRES   2 A  279  ILE GLY THR GLY SER TYR GLY ARG CYS GLN LYS ILE ARG          
SEQRES   3 A  279  ARG LYS SER ASP GLY LYS ILE LEU VAL TRP LYS GLU LEU          
SEQRES   4 A  279  ASP TYR GLY SER MET THR GLU ALA GLU LYS GLN MET LEU          
SEQRES   5 A  279  VAL SER GLU VAL ASN LEU LEU ARG GLU LEU LYS HIS PRO          
SEQRES   6 A  279  ASN ILE VAL ARG TYR TYR ASP ARG ILE ILE ASP ARG THR          
SEQRES   7 A  279  ASN THR THR LEU TYR ILE VAL MET GLU TYR CYS GLU GLY          
SEQRES   8 A  279  GLY ASP LEU ALA SER VAL ILE THR LYS GLY THR LYS GLU          
SEQRES   9 A  279  ARG GLN TYR LEU ASP GLU GLU PHE VAL LEU ARG VAL MET          
SEQRES  10 A  279  THR GLN LEU THR LEU ALA LEU LYS GLU CYS HIS ARG ARG          
SEQRES  11 A  279  SER ASP GLY GLY HIS THR VAL LEU HIS ARG ASP LEU LYS          
SEQRES  12 A  279  PRO ALA ASN VAL PHE LEU ASP GLY LYS GLN ASN VAL LYS          
SEQRES  13 A  279  LEU GLY ASP PHE GLY LEU ALA ARG ILE LEU ASN HIS ASP          
SEQRES  14 A  279  THR SER PHE ALA LYS ALA PHE VAL GLY THR PRO TYR TYR          
SEQRES  15 A  279  MET SER PRO GLU GLN MET ASN ARG MET SER TYR ASN GLU          
SEQRES  16 A  279  LYS SER ASP ILE TRP SER LEU GLY CYS LEU LEU TYR GLU          
SEQRES  17 A  279  LEU CYS ALA LEU MET PRO PRO PHE THR ALA PHE SER GLN          
SEQRES  18 A  279  LYS GLU LEU ALA GLY LYS ILE ARG GLU GLY LYS PHE ARG          
SEQRES  19 A  279  ARG ILE PRO TYR ARG TYR SER ASP GLU LEU ASN GLU ILE          
SEQRES  20 A  279  ILE THR ARG MET LEU ASN LEU LYS ASP TYR HIS ARG PRO          
SEQRES  21 A  279  SER VAL GLU GLU ILE LEU GLU ASN PRO LEU ILE LEU GLU          
SEQRES  22 A  279  HIS HIS HIS HIS HIS HIS                                      
HET    5Z5  A1280      23                                                       
HETNAM     5Z5 5-[(Z)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)           
HETNAM   2 5Z5  METHYL]-N-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-                 
HETNAM   3 5Z5  PYRROLE-3-CARBOXAMIDE                                           
FORMUL   2  5Z5    C17 H16 CL N3 O2                                             
FORMUL   3  HOH   *107(H2 O)                                                    
HELIX    1   1 ARG A    4  GLU A    6  5                                   3    
HELIX    2   2 THR A   45  LEU A   59  1                                  15    
HELIX    3   3 LEU A   94  ARG A  105  1                                  12    
HELIX    4   4 ASP A  109  SER A  131  1                                  23    
HELIX    5   5 LYS A  143  ALA A  145  5                                   3    
HELIX    6   6 ASP A  159  LEU A  166  1                                   8    
HELIX    7   7 SER A  184  ASN A  189  1                                   6    
HELIX    8   8 ASN A  194  LEU A  212  1                                  19    
HELIX    9   9 SER A  220  GLY A  231  1                                  12    
HELIX   10  10 SER A  241  LEU A  252  1                                  12    
HELIX   11  11 LYS A  255  ARG A  259  5                                   5    
HELIX   12  12 SER A  261  GLU A  267  1                                   7    
HELIX   13  13 LEU A  272  HIS A  276  5                                   5    
SHEET    1  AA 5 TYR A   8  THR A  16  0                                        
SHEET    2  AA 5 GLY A  20  ARG A  27 -1  O  CYS A  22   N  ILE A  14           
SHEET    3  AA 5 ILE A  33  LEU A  39 -1  O  LEU A  34   N  ILE A  25           
SHEET    4  AA 5 LEU A  82  GLU A  87 -1  O  LEU A  82   N  LEU A  39           
SHEET    5  AA 5 TYR A  70  ILE A  75 -1  N  TYR A  71   O  VAL A  85           
SHEET    1  AB 3 GLY A  92  ASP A  93  0                                        
SHEET    2  AB 3 VAL A 147  LEU A 149 -1  N  LEU A 149   O  GLY A  92           
SHEET    3  AB 3 VAL A 155  LEU A 157 -1  O  LYS A 156   N  PHE A 148           
SITE     1 AC1 12 ILE A  14  VAL A  35  LYS A  37  VAL A  68                    
SITE     2 AC1 12 MET A  86  GLU A  87  TYR A  88  CYS A  89                    
SITE     3 AC1 12 GLU A  90  GLY A  92  PHE A 148  LEU A 162                    
CRYST1   41.634   56.924   66.012  90.00  95.98  90.00 P 1 21 1      2          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.024019  0.000000  0.002516        0.00000                         
SCALE2      0.000000  0.017567  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.015232        0.00000