PDB Short entry for 2JBH HEADER TRANSFERASE 07-DEC-06 2JBH TITLE HUMAN PHOSPHORIBOSYL TRANSFERASE DOMAIN CONTAINING 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLTRANSFERASE DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HHGP, PHOSPHORIBOSYL TRANSFERASE DOMAIN CONTAINING 1, COMPND 5 PHOSPHORIBOSYL TRANSFERASE DOMAIN CONTAINING 1, CDNA FLJ11888 FIS, COMPND 6 CLONE HEMBA1007243, WEAKLY SIMILAR TO CHINESE HAMSTER HPRT MRNA; COMPND 7 EC: 2.4.2.8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRTFDC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE, PURINE SALVAGE EXPDTA X-RAY DIFFRACTION AUTHOR M.WELIN,P.STENMARK,C.ARROWSMITH,H.BERGLUND,R.BUSAM,R.COLLINS, AUTHOR 2 A.EDWARDS,H.EKLUND,U.B.ERICSSON,S.FLODIN,A.FLORES,S.GRASLUND, AUTHOR 3 M.HAMMARSTROM,B.M.HALLBERG,L.HOLMBERG SCHIAVONE,M.HOGBOM, AUTHOR 4 I.JOHANSSON,T.KARLBERG,T.KOTENYOVA,M.MOCHE,M.E.NILSSON,T.NYMAN, AUTHOR 5 D.OGG,C.PERSSON,J.SAGEMARK,M.SUNDSTROM,J.UPPENBERG,A.G.THORSELL, AUTHOR 6 S.VAN DEN BERG,J.WEIGELT,P.NORDLUND REVDAT 5 13-DEC-23 2JBH 1 REMARK LINK REVDAT 4 16-MAR-11 2JBH 1 VERSN REVDAT 3 24-FEB-09 2JBH 1 VERSN REVDAT 2 23-JAN-07 2JBH 1 REMARK HET LINK HETATM REVDAT 2 2 1 CONECT MASTER REVDAT 1 20-DEC-06 2JBH 0 JRNL AUTH M.WELIN,L.EGEBLAD,A.JOHANSSON,P.STENMARK,L.WANG,S.FLODIN, JRNL AUTH 2 T.NYMAN,L.TRESAUGUES,T.KOTENYOVA,I.JOHANSSON,S.ERIKSSON, JRNL AUTH 3 H.EKLUND,P.NORDLUND JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF THE HUMAN JRNL TITL 2 PHOSPHORIBOSYLTRANSFERASE DOMAIN CONTAINING PROTEIN 1. JRNL REF FEBS J. V. 277 4920 2010 JRNL REFN ISSN 1742-464X JRNL PMID 21054786 JRNL DOI 10.1111/J.1742-4658.2010.07897.X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60664 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3236 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4476 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 226 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3404 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.18000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : -0.09000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.651 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3564 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4817 ; 1.398 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 424 ; 5.454 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;30.199 ;23.713 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 632 ;12.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2644 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1678 ; 0.241 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2446 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 333 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 109 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 40 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2155 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3392 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1623 ; 2.354 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1421 ; 3.507 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 111-120 IN SUBUNIT A AND 176-179 IN SUBUNIT REMARK 3 B ARE DISORDERED. REMARK 4 REMARK 4 2JBH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1290030756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63918 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1HMP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 6.1, 200 REMARK 280 MM CALCIUM ACETATE, 34% PEG 300, PH 6.10 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -178.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 52.13200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 GLU A 6 REMARK 465 SER A 111 REMARK 465 TYR A 112 REMARK 465 ARG A 113 REMARK 465 ASN A 114 REMARK 465 ASP A 115 REMARK 465 GLN A 116 REMARK 465 SER A 117 REMARK 465 MET A 118 REMARK 465 GLY A 119 REMARK 465 GLU A 120 REMARK 465 SER A 176 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 ALA B 8 REMARK 465 SER B 176 REMARK 465 ARG B 177 REMARK 465 SER B 178 REMARK 465 ASP B 179 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CAS A 82 C ALA A 83 N 0.217 REMARK 500 PHE B 81 C CAS B 82 N 0.171 REMARK 500 CAS B 82 C ALA B 83 N 0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 96 -164.10 -107.13 REMARK 500 ASP A 179 42.55 -102.72 REMARK 500 ALA A 199 -13.94 83.96 REMARK 500 GLU A 204 -7.13 77.75 REMARK 500 ALA B 199 -13.50 84.59 REMARK 500 GLU B 204 -5.44 76.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1228 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 141 OE1 REMARK 620 2 GLU A 141 OE2 51.8 REMARK 620 3 ASP A 142 OD1 90.6 71.1 REMARK 620 4 5GP A1230 O3' 92.1 141.2 130.2 REMARK 620 5 5GP A1230 O2' 78.4 113.7 68.6 63.4 REMARK 620 6 HOH A2140 O 159.2 137.2 78.7 81.6 81.0 REMARK 620 7 HOH A2141 O 122.1 72.3 84.1 133.3 146.6 75.0 REMARK 620 8 HOH A2143 O 96.2 98.0 159.3 69.1 131.9 100.0 75.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1229 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD1 REMARK 620 2 PO4 A1227 O3 125.9 REMARK 620 3 PO4 A1227 O4 72.1 54.1 REMARK 620 4 HOH A2118 O 82.1 130.0 133.5 REMARK 620 5 HOH A2127 O 91.0 76.4 81.0 61.1 REMARK 620 6 HOH A2145 O 111.9 72.0 85.0 141.2 147.9 REMARK 620 7 HOH B2089 O 151.5 81.8 135.9 73.2 89.3 80.9 REMARK 620 8 HOH B2090 O 74.3 148.4 132.8 71.4 131.8 77.9 84.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1229 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 141 OE2 REMARK 620 2 GLU B 141 OE1 51.4 REMARK 620 3 ASP B 142 OD1 91.2 70.7 REMARK 620 4 5GP B1230 O3' 92.9 142.2 129.4 REMARK 620 5 5GP B1230 O2' 79.1 113.6 69.3 62.2 REMARK 620 6 HOH B2142 O 161.9 134.7 78.1 83.1 83.5 REMARK 620 7 HOH B2144 O 118.9 70.1 84.4 134.5 149.0 75.0 REMARK 620 8 HOH B2153 O 93.8 100.0 162.9 66.6 127.7 100.7 78.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1228 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD2 REMARK 620 2 ASP B 201 OD1 40.7 REMARK 620 3 PO4 B1227 O3 92.3 71.2 REMARK 620 4 PO4 B1227 O4 132.7 124.6 53.4 REMARK 620 5 HOH B2127 O 77.4 74.2 136.8 149.8 REMARK 620 6 HOH B2128 O 56.0 90.3 87.4 87.5 118.0 REMARK 620 7 HOH B2143 O 123.1 156.4 132.1 78.8 86.0 87.9 REMARK 620 8 HOH B2147 O 140.7 102.8 85.4 75.1 77.8 162.1 84.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 1230 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 1230 DBREF 2JBH A 1 225 UNP Q9NRG1 Q9NRG1_HUMAN 1 225 DBREF 2JBH B 1 225 UNP Q9NRG1 Q9NRG1_HUMAN 1 225 SEQRES 1 A 225 MET ALA GLY SER SER GLU GLU ALA PRO ASP TYR GLY ARG SEQRES 2 A 225 GLY VAL VAL ILE MET ASP ASP TRP PRO GLY TYR ASP LEU SEQRES 3 A 225 ASN LEU PHE THR TYR PRO GLN HIS TYR TYR GLY ASP LEU SEQRES 4 A 225 GLU TYR VAL LEU ILE PRO HIS GLY ILE ILE VAL ASP ARG SEQRES 5 A 225 ILE GLU ARG LEU ALA LYS ASP ILE MET LYS ASP ILE GLY SEQRES 6 A 225 TYR SER ASP ILE MET VAL LEU CYS VAL LEU LYS GLY GLY SEQRES 7 A 225 TYR LYS PHE CAS ALA ASP LEU VAL GLU HIS LEU LYS ASN SEQRES 8 A 225 ILE SER ARG ASN SER ASP ARG PHE VAL SER MET LYS VAL SEQRES 9 A 225 ASP PHE ILE ARG LEU LYS SER TYR ARG ASN ASP GLN SER SEQRES 10 A 225 MET GLY GLU MET GLN ILE ILE GLY GLY ASP ASP LEU SER SEQRES 11 A 225 THR LEU ALA GLY LYS ASN VAL LEU ILE VAL GLU ASP VAL SEQRES 12 A 225 VAL GLY THR GLY ARG THR MET LYS ALA LEU LEU SER ASN SEQRES 13 A 225 ILE GLU LYS TYR LYS PRO ASN MET ILE LYS VAL ALA SER SEQRES 14 A 225 LEU LEU VAL LYS ARG THR SER ARG SER ASP GLY PHE ARG SEQRES 15 A 225 PRO ASP TYR ALA GLY PHE GLU ILE PRO ASN LEU PHE VAL SEQRES 16 A 225 VAL GLY TYR ALA LEU ASP TYR ASN GLU TYR PHE ARG ASP SEQRES 17 A 225 LEU ASN HIS ILE CYS VAL ILE ASN GLU HIS GLY LYS GLU SEQRES 18 A 225 LYS TYR ARG VAL SEQRES 1 B 225 MET ALA GLY SER SER GLU GLU ALA PRO ASP TYR GLY ARG SEQRES 2 B 225 GLY VAL VAL ILE MET ASP ASP TRP PRO GLY TYR ASP LEU SEQRES 3 B 225 ASN LEU PHE THR TYR PRO GLN HIS TYR TYR GLY ASP LEU SEQRES 4 B 225 GLU TYR VAL LEU ILE PRO HIS GLY ILE ILE VAL ASP ARG SEQRES 5 B 225 ILE GLU ARG LEU ALA LYS ASP ILE MET LYS ASP ILE GLY SEQRES 6 B 225 TYR SER ASP ILE MET VAL LEU CYS VAL LEU LYS GLY GLY SEQRES 7 B 225 TYR LYS PHE CAS ALA ASP LEU VAL GLU HIS LEU LYS ASN SEQRES 8 B 225 ILE SER ARG ASN SER ASP ARG PHE VAL SER MET LYS VAL SEQRES 9 B 225 ASP PHE ILE ARG LEU LYS SER TYR ARG ASN ASP GLN SER SEQRES 10 B 225 MET GLY GLU MET GLN ILE ILE GLY GLY ASP ASP LEU SER SEQRES 11 B 225 THR LEU ALA GLY LYS ASN VAL LEU ILE VAL GLU ASP VAL SEQRES 12 B 225 VAL GLY THR GLY ARG THR MET LYS ALA LEU LEU SER ASN SEQRES 13 B 225 ILE GLU LYS TYR LYS PRO ASN MET ILE LYS VAL ALA SER SEQRES 14 B 225 LEU LEU VAL LYS ARG THR SER ARG SER ASP GLY PHE ARG SEQRES 15 B 225 PRO ASP TYR ALA GLY PHE GLU ILE PRO ASN LEU PHE VAL SEQRES 16 B 225 VAL GLY TYR ALA LEU ASP TYR ASN GLU TYR PHE ARG ASP SEQRES 17 B 225 LEU ASN HIS ILE CYS VAL ILE ASN GLU HIS GLY LYS GLU SEQRES 18 B 225 LYS TYR ARG VAL MODRES 2JBH CAS A 82 CYS S-(DIMETHYLARSENIC)CYSTEINE MODRES 2JBH CAS B 82 CYS S-(DIMETHYLARSENIC)CYSTEINE HET CAS A 82 9 HET CAS B 82 9 HET PO4 A1227 5 HET CA A1228 1 HET CA A1229 1 HET 5GP A1230 24 HET PO4 B1227 5 HET CA B1228 1 HET CA B1229 1 HET 5GP B1230 24 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 1 CAS 2(C5 H12 AS N O2 S) FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 CA 4(CA 2+) FORMUL 6 5GP 2(C10 H14 N5 O8 P) FORMUL 11 HOH *303(H2 O) HELIX 1 1 ASP A 10 GLY A 14 5 5 HELIX 2 2 ASP A 25 PHE A 29 5 5 HELIX 3 3 PRO A 32 TYR A 36 5 5 HELIX 4 4 PRO A 45 GLY A 65 1 21 HELIX 5 5 ALA A 83 SER A 96 1 14 HELIX 6 6 ASP A 128 ALA A 133 5 6 HELIX 7 7 GLY A 147 LYS A 159 1 13 HELIX 8 8 ASN A 216 TYR A 223 1 8 HELIX 9 9 ASP B 10 GLY B 14 5 5 HELIX 10 10 ASP B 25 PHE B 29 5 5 HELIX 11 11 PRO B 32 TYR B 36 5 5 HELIX 12 12 PRO B 45 GLY B 65 1 21 HELIX 13 13 ALA B 83 SER B 96 1 14 HELIX 14 14 ASP B 128 ALA B 133 5 6 HELIX 15 15 GLY B 147 LYS B 159 1 13 HELIX 16 16 ASN B 216 TYR B 223 1 8 SHEET 1 AA 7 VAL A 15 VAL A 16 0 SHEET 2 AA 7 TYR A 185 ILE A 190 1 O GLY A 187 N VAL A 15 SHEET 3 AA 7 MET A 164 LYS A 173 1 O VAL A 167 N TYR A 185 SHEET 4 AA 7 ASN A 136 VAL A 144 1 O VAL A 137 N LYS A 166 SHEET 5 AA 7 ILE A 69 LEU A 75 1 O MET A 70 N LEU A 138 SHEET 6 AA 7 MET A 102 LEU A 109 1 O LYS A 103 N VAL A 71 SHEET 7 AA 7 ILE A 123 ILE A 124 -1 O ILE A 124 N ARG A 108 SHEET 1 AB 2 LEU A 39 ILE A 44 0 SHEET 2 AB 2 ILE A 212 ILE A 215 -1 O ILE A 212 N LEU A 43 SHEET 1 BA 7 VAL B 15 VAL B 16 0 SHEET 2 BA 7 TYR B 185 ILE B 190 1 O GLY B 187 N VAL B 15 SHEET 3 BA 7 MET B 164 LYS B 173 1 O VAL B 167 N TYR B 185 SHEET 4 BA 7 ASN B 136 VAL B 144 1 O VAL B 137 N LYS B 166 SHEET 5 BA 7 SER B 67 LEU B 75 1 O ASP B 68 N ASN B 136 SHEET 6 BA 7 VAL B 100 ARG B 113 1 O SER B 101 N ILE B 69 SHEET 7 BA 7 GLY B 119 ILE B 124 -1 O GLU B 120 N TYR B 112 SHEET 1 BB 2 LEU B 39 ILE B 44 0 SHEET 2 BB 2 ILE B 212 ILE B 215 -1 O ILE B 212 N LEU B 43 LINK C PHE A 81 N CAS A 82 1555 1555 1.47 LINK C CAS A 82 N ALA A 83 1555 1555 1.55 LINK C PHE B 81 N CAS B 82 1555 1555 1.51 LINK C CAS B 82 N ALA B 83 1555 1555 1.52 LINK OE1 GLU A 141 CA CA A1228 1555 1555 2.43 LINK OE2 GLU A 141 CA CA A1228 1555 1555 2.63 LINK OD1 ASP A 142 CA CA A1228 1555 1555 2.40 LINK OD1 ASP A 201 CA CA A1229 1555 1555 2.36 LINK O3 PO4 A1227 CA CA A1229 1555 1555 2.77 LINK O4 PO4 A1227 CA CA A1229 1555 1555 2.45 LINK CA CA A1228 O3' 5GP A1230 1555 1555 2.59 LINK CA CA A1228 O2' 5GP A1230 1555 1555 2.55 LINK CA CA A1228 O HOH A2140 1555 1555 2.41 LINK CA CA A1228 O HOH A2141 1555 1555 2.43 LINK CA CA A1228 O HOH A2143 1555 1555 2.47 LINK CA CA A1229 O HOH A2118 1555 1555 2.58 LINK CA CA A1229 O HOH A2127 1555 1555 2.54 LINK CA CA A1229 O HOH A2145 1555 1555 2.47 LINK CA CA A1229 O HOH B2089 1555 2655 2.42 LINK CA CA A1229 O HOH B2090 1555 2655 2.50 LINK OE2 GLU B 141 CA CA B1229 1555 1555 2.40 LINK OE1 GLU B 141 CA CA B1229 1555 1555 2.68 LINK OD1 ASP B 142 CA CA B1229 1555 1555 2.43 LINK OD2 ASP B 201 CA CA B1228 1555 1555 3.34 LINK OD1 ASP B 201 CA CA B1228 1555 1555 2.35 LINK O3 PO4 B1227 CA CA B1228 1555 1555 2.46 LINK O4 PO4 B1227 CA CA B1228 1555 1555 2.87 LINK CA CA B1228 O HOH B2127 1555 1555 2.49 LINK CA CA B1228 O HOH B2128 1555 1555 2.48 LINK CA CA B1228 O HOH B2143 1555 1555 2.31 LINK CA CA B1228 O HOH B2147 1555 1555 2.42 LINK CA CA B1229 O3' 5GP B1230 1555 1555 2.56 LINK CA CA B1229 O2' 5GP B1230 1555 1555 2.57 LINK CA CA B1229 O HOH B2142 1555 1555 2.43 LINK CA CA B1229 O HOH B2144 1555 1555 2.43 LINK CA CA B1229 O HOH B2153 1555 1555 2.45 CISPEP 1 LEU A 75 LYS A 76 0 -5.57 CISPEP 2 LEU B 75 LYS B 76 0 -5.26 SITE 1 AC1 11 LEU A 75 LYS A 76 GLY A 77 ASP A 201 SITE 2 AC1 11 ARG A 207 CA A1229 HOH A2139 HOH A2140 SITE 3 AC1 11 HOH A2141 HOH A2142 HOH A2145 SITE 1 AC2 6 GLU A 141 ASP A 142 5GP A1230 HOH A2140 SITE 2 AC2 6 HOH A2141 HOH A2143 SITE 1 AC3 7 ASP A 201 PO4 A1227 HOH A2118 HOH A2127 SITE 2 AC3 7 HOH A2145 HOH B2089 HOH B2090 SITE 1 AC4 12 LEU B 75 LYS B 76 GLY B 77 ASP B 201 SITE 2 AC4 12 ARG B 207 CA B1228 HOH B2075 HOH B2108 SITE 3 AC4 12 HOH B2141 HOH B2142 HOH B2144 HOH B2145 SITE 1 AC5 6 ASP B 201 PO4 B1227 HOH B2127 HOH B2128 SITE 2 AC5 6 HOH B2143 HOH B2147 SITE 1 AC6 6 GLU B 141 ASP B 142 5GP B1230 HOH B2142 SITE 2 AC6 6 HOH B2144 HOH B2153 SITE 1 AC7 23 GLU A 141 ASP A 142 VAL A 143 GLY A 145 SITE 2 AC7 23 THR A 146 GLY A 147 ARG A 148 THR A 149 SITE 3 AC7 23 LYS A 173 PHE A 194 VAL A 195 LEU A 200 SITE 4 AC7 23 ASP A 201 CA A1228 HOH A2142 HOH A2143 SITE 5 AC7 23 HOH A2144 HOH A2145 HOH A2146 HOH A2147 SITE 6 AC7 23 HOH A2148 GLN B 116 HOH B2087 SITE 1 AC8 21 GLU B 141 ASP B 142 VAL B 143 GLY B 145 SITE 2 AC8 21 THR B 146 GLY B 147 ARG B 148 THR B 149 SITE 3 AC8 21 LYS B 173 LEU B 193 PHE B 194 VAL B 195 SITE 4 AC8 21 ASP B 201 CA B1229 HOH B2108 HOH B2146 SITE 5 AC8 21 HOH B2147 HOH B2148 HOH B2150 HOH B2152 SITE 6 AC8 21 HOH B2153 CRYST1 139.232 139.232 52.132 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007182 0.004147 0.000000 0.00000 SCALE2 0.000000 0.008293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019182 0.00000 MTRIX1 1 0.110100 -0.632800 -0.766500 77.50000 1 MTRIX2 1 -0.640500 -0.634900 0.432100 89.45000 1 MTRIX3 1 -0.760100 0.443300 -0.475200 38.06000 1