PDB Short entry for 2JGN HEADER HYDROLASE 13-FEB-07 2JGN TITLE DDX3 HELICASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX3X; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: HELICASE DOMAIN, RESIDUES 408-579; COMPND 5 SYNONYM: DBX, DDX3; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCOLD III KEYWDS PHOSPHORYLATION, NUCLEOTIDE-BINDING, HELICASE, HYDROLASE, RNA- KEYWDS 2 BINDING, ATP-BINDING, DNA-BINDING, NUCLEAR PROTEIN, HOST-VIRUS KEYWDS 3 INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR B.RODAMILANS,G.MONTOYA REVDAT 5 13-DEC-23 2JGN 1 REMARK REVDAT 4 30-MAY-12 2JGN 1 JRNL REMARK REVDAT 3 13-JUL-11 2JGN 1 VERSN REVDAT 2 24-FEB-09 2JGN 1 VERSN REVDAT 1 13-MAY-08 2JGN 0 JRNL AUTH B.RODAMILANS,G.MONTOYA JRNL TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY JRNL TITL 2 X-RAY DIFFRACTION ANALYSIS OF THE DDX3 RNA HELICASE DOMAIN. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 283 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17401195 JRNL DOI 10.1107/S1744309107006434 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 32363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.91 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1757 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3727 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.191 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.522 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3781 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5104 ; 1.682 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 459 ; 6.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;37.625 ;24.541 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;16.069 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.517 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 592 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2805 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1687 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2577 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 203 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 62 ; 0.222 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2400 ; 1.209 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3734 ; 1.889 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1571 ; 3.122 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1370 ; 4.791 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 410 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4200 12.3610 59.9140 REMARK 3 T TENSOR REMARK 3 T11: -0.0483 T22: -0.0214 REMARK 3 T33: -0.0124 T12: 0.0257 REMARK 3 T13: 0.0101 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 3.8156 L22: 2.0639 REMARK 3 L33: 5.1522 L12: -0.0403 REMARK 3 L13: 0.5638 L23: 1.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.1718 S12: -0.1067 S13: -0.2711 REMARK 3 S21: 0.1053 S22: 0.0604 S23: 0.0037 REMARK 3 S31: 0.6675 S32: 0.2340 S33: -0.2322 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 408 B 575 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2100 40.4340 55.0360 REMARK 3 T TENSOR REMARK 3 T11: -0.0546 T22: 0.0562 REMARK 3 T33: -0.0535 T12: -0.0204 REMARK 3 T13: 0.0303 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 3.2175 L22: 2.4328 REMARK 3 L33: 2.9587 L12: 0.2942 REMARK 3 L13: 0.0123 L23: -1.1866 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: 0.3259 S13: 0.1496 REMARK 3 S21: 0.1014 S22: -0.0914 S23: -0.1061 REMARK 3 S31: -0.3563 S32: 0.1940 S33: 0.1579 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 411 C 574 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6290 30.2500 83.3460 REMARK 3 T TENSOR REMARK 3 T11: -0.0213 T22: 0.0575 REMARK 3 T33: -0.0062 T12: 0.0240 REMARK 3 T13: 0.0624 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.2663 L22: 2.4233 REMARK 3 L33: 2.5952 L12: 0.1414 REMARK 3 L13: 0.2339 L23: -0.2414 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: -0.0936 S13: 0.0505 REMARK 3 S21: 0.2756 S22: -0.0242 S23: -0.0147 REMARK 3 S31: -0.1015 S32: -0.0628 S33: 0.0086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2JGN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-07. REMARK 100 THE DEPOSITION ID IS D_1290031452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SILICON (1 1 1) CHANNEL- CUT REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105982 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 87.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2DB3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 2M (NH4)2SO4, 0.1M REMARK 280 IMIDAZOLE PH 6.4 PLUS 5MM SPERMINE TETRA-HCL PROTEIN: 10MM HEPES, REMARK 280 500MM (NH4)2SO4, PH 8.0. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.51600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 GLU A 402 REMARK 465 ASN A 403 REMARK 465 LEU A 404 REMARK 465 TYR A 405 REMARK 465 PHE A 406 REMARK 465 GLN A 407 REMARK 465 GLY A 408 REMARK 465 SER A 409 REMARK 465 GLY A 438 REMARK 465 GLY A 472 REMARK 465 ASP A 473 REMARK 465 ARG A 474 REMARK 465 SER A 475 REMARK 465 GLN A 476 REMARK 465 ARG A 477 REMARK 465 ASP A 478 REMARK 465 ARG A 479 REMARK 465 VAL A 499 REMARK 465 ALA A 500 REMARK 465 ALA A 501 REMARK 465 ARG A 502 REMARK 465 GLY A 503 REMARK 465 LEU A 504 REMARK 465 GLU A 576 REMARK 465 HIS A 577 REMARK 465 HIS A 578 REMARK 465 TYR A 579 REMARK 465 MET B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 465 HIS B 399 REMARK 465 HIS B 400 REMARK 465 HIS B 401 REMARK 465 GLU B 402 REMARK 465 ASN B 403 REMARK 465 LEU B 404 REMARK 465 TYR B 405 REMARK 465 PHE B 406 REMARK 465 GLN B 407 REMARK 465 LYS B 439 REMARK 465 ASP B 440 REMARK 465 ALA B 501 REMARK 465 ARG B 502 REMARK 465 GLY B 503 REMARK 465 LEU B 504 REMARK 465 ASP B 505 REMARK 465 GLU B 576 REMARK 465 HIS B 577 REMARK 465 HIS B 578 REMARK 465 TYR B 579 REMARK 465 MET C 395 REMARK 465 HIS C 396 REMARK 465 HIS C 397 REMARK 465 HIS C 398 REMARK 465 HIS C 399 REMARK 465 HIS C 400 REMARK 465 HIS C 401 REMARK 465 GLU C 402 REMARK 465 ASN C 403 REMARK 465 LEU C 404 REMARK 465 TYR C 405 REMARK 465 PHE C 406 REMARK 465 GLN C 407 REMARK 465 GLY C 408 REMARK 465 SER C 409 REMARK 465 THR C 410 REMARK 465 ALA C 436 REMARK 465 LYS C 439 REMARK 465 ASP C 440 REMARK 465 GLN C 476 REMARK 465 ARG C 477 REMARK 465 ASP C 478 REMARK 465 TYR C 575 REMARK 465 GLU C 576 REMARK 465 HIS C 577 REMARK 465 HIS C 578 REMARK 465 TYR C 579 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN C 508 O HOH C 2043 1.96 REMARK 500 O HOH C 2046 O HOH C 2048 2.06 REMARK 500 NZ LYS A 510 O HOH A 2026 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2001 O HOH B 2026 2546 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 483 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL DBREF 2JGN A 395 407 PDB 2JGN 2JGN 395 407 DBREF 2JGN A 408 579 UNP O00571 DDX3X_HUMAN 408 579 DBREF 2JGN B 395 407 PDB 2JGN 2JGN 395 407 DBREF 2JGN B 408 579 UNP O00571 DDX3X_HUMAN 408 579 DBREF 2JGN C 395 407 PDB 2JGN 2JGN 395 407 DBREF 2JGN C 408 579 UNP O00571 DDX3X_HUMAN 408 579 SEQRES 1 A 185 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 A 185 GLY SER THR SER GLU ASN ILE THR GLN LYS VAL VAL TRP SEQRES 3 A 185 VAL GLU GLU SER ASP LYS ARG SER PHE LEU LEU ASP LEU SEQRES 4 A 185 LEU ASN ALA THR GLY LYS ASP SER LEU THR LEU VAL PHE SEQRES 5 A 185 VAL GLU THR LYS LYS GLY ALA ASP SER LEU GLU ASP PHE SEQRES 6 A 185 LEU TYR HIS GLU GLY TYR ALA CYS THR SER ILE HIS GLY SEQRES 7 A 185 ASP ARG SER GLN ARG ASP ARG GLU GLU ALA LEU HIS GLN SEQRES 8 A 185 PHE ARG SER GLY LYS SER PRO ILE LEU VAL ALA THR ALA SEQRES 9 A 185 VAL ALA ALA ARG GLY LEU ASP ILE SER ASN VAL LYS HIS SEQRES 10 A 185 VAL ILE ASN PHE ASP LEU PRO SER ASP ILE GLU GLU TYR SEQRES 11 A 185 VAL HIS ARG ILE GLY ARG THR GLY ARG VAL GLY ASN LEU SEQRES 12 A 185 GLY LEU ALA THR SER PHE PHE ASN GLU ARG ASN ILE ASN SEQRES 13 A 185 ILE THR LYS ASP LEU LEU ASP LEU LEU VAL GLU ALA LYS SEQRES 14 A 185 GLN GLU VAL PRO SER TRP LEU GLU ASN MET ALA TYR GLU SEQRES 15 A 185 HIS HIS TYR SEQRES 1 B 185 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 B 185 GLY SER THR SER GLU ASN ILE THR GLN LYS VAL VAL TRP SEQRES 3 B 185 VAL GLU GLU SER ASP LYS ARG SER PHE LEU LEU ASP LEU SEQRES 4 B 185 LEU ASN ALA THR GLY LYS ASP SER LEU THR LEU VAL PHE SEQRES 5 B 185 VAL GLU THR LYS LYS GLY ALA ASP SER LEU GLU ASP PHE SEQRES 6 B 185 LEU TYR HIS GLU GLY TYR ALA CYS THR SER ILE HIS GLY SEQRES 7 B 185 ASP ARG SER GLN ARG ASP ARG GLU GLU ALA LEU HIS GLN SEQRES 8 B 185 PHE ARG SER GLY LYS SER PRO ILE LEU VAL ALA THR ALA SEQRES 9 B 185 VAL ALA ALA ARG GLY LEU ASP ILE SER ASN VAL LYS HIS SEQRES 10 B 185 VAL ILE ASN PHE ASP LEU PRO SER ASP ILE GLU GLU TYR SEQRES 11 B 185 VAL HIS ARG ILE GLY ARG THR GLY ARG VAL GLY ASN LEU SEQRES 12 B 185 GLY LEU ALA THR SER PHE PHE ASN GLU ARG ASN ILE ASN SEQRES 13 B 185 ILE THR LYS ASP LEU LEU ASP LEU LEU VAL GLU ALA LYS SEQRES 14 B 185 GLN GLU VAL PRO SER TRP LEU GLU ASN MET ALA TYR GLU SEQRES 15 B 185 HIS HIS TYR SEQRES 1 C 185 MET HIS HIS HIS HIS HIS HIS GLU ASN LEU TYR PHE GLN SEQRES 2 C 185 GLY SER THR SER GLU ASN ILE THR GLN LYS VAL VAL TRP SEQRES 3 C 185 VAL GLU GLU SER ASP LYS ARG SER PHE LEU LEU ASP LEU SEQRES 4 C 185 LEU ASN ALA THR GLY LYS ASP SER LEU THR LEU VAL PHE SEQRES 5 C 185 VAL GLU THR LYS LYS GLY ALA ASP SER LEU GLU ASP PHE SEQRES 6 C 185 LEU TYR HIS GLU GLY TYR ALA CYS THR SER ILE HIS GLY SEQRES 7 C 185 ASP ARG SER GLN ARG ASP ARG GLU GLU ALA LEU HIS GLN SEQRES 8 C 185 PHE ARG SER GLY LYS SER PRO ILE LEU VAL ALA THR ALA SEQRES 9 C 185 VAL ALA ALA ARG GLY LEU ASP ILE SER ASN VAL LYS HIS SEQRES 10 C 185 VAL ILE ASN PHE ASP LEU PRO SER ASP ILE GLU GLU TYR SEQRES 11 C 185 VAL HIS ARG ILE GLY ARG THR GLY ARG VAL GLY ASN LEU SEQRES 12 C 185 GLY LEU ALA THR SER PHE PHE ASN GLU ARG ASN ILE ASN SEQRES 13 C 185 ILE THR LYS ASP LEU LEU ASP LEU LEU VAL GLU ALA LYS SEQRES 14 C 185 GLN GLU VAL PRO SER TRP LEU GLU ASN MET ALA TYR GLU SEQRES 15 C 185 HIS HIS TYR FORMUL 4 HOH *193(H2 O) HELIX 1 1 GLU A 422 SER A 424 5 3 HELIX 2 2 ASP A 425 THR A 437 1 13 HELIX 3 3 THR A 449 GLU A 463 1 15 HELIX 4 4 GLU A 480 SER A 488 1 9 HELIX 5 5 ASP A 520 GLY A 529 1 10 HELIX 6 6 ASN A 545 ASN A 550 5 6 HELIX 7 7 ILE A 551 ALA A 562 1 12 HELIX 8 8 PRO A 567 TYR A 575 1 9 HELIX 9 9 GLU B 422 SER B 424 5 3 HELIX 10 10 ASP B 425 GLY B 438 1 14 HELIX 11 11 THR B 449 GLU B 463 1 15 HELIX 12 12 SER B 475 SER B 488 1 14 HELIX 13 13 ASP B 520 GLY B 529 1 10 HELIX 14 14 ASN B 545 ASN B 550 5 6 HELIX 15 15 ILE B 551 ALA B 562 1 12 HELIX 16 16 PRO B 567 TYR B 575 1 9 HELIX 17 17 GLU C 422 SER C 424 5 3 HELIX 18 18 ASP C 425 ASN C 435 1 11 HELIX 19 19 THR C 449 GLU C 463 1 15 HELIX 20 20 ARG C 479 SER C 488 1 10 HELIX 21 21 ASP C 520 GLY C 529 1 10 HELIX 22 22 ASN C 545 ASN C 550 5 6 HELIX 23 23 ILE C 551 ALA C 562 1 12 HELIX 24 24 PRO C 567 ALA C 574 1 8 SHEET 1 AA 6 ILE A 414 TRP A 420 0 SHEET 2 AA 6 GLY A 538 PHE A 544 1 O GLY A 538 N THR A 415 SHEET 3 AA 6 HIS A 511 ASN A 514 1 O VAL A 512 N THR A 541 SHEET 4 AA 6 THR A 443 VAL A 447 1 O LEU A 444 N ILE A 513 SHEET 5 AA 6 ILE A 493 THR A 497 1 O LEU A 494 N VAL A 445 SHEET 6 AA 6 CYS A 467 ILE A 470 1 O THR A 468 N VAL A 495 SHEET 1 BA 6 ILE B 414 TRP B 420 0 SHEET 2 BA 6 GLY B 538 PHE B 544 1 O GLY B 538 N THR B 415 SHEET 3 BA 6 HIS B 511 ASN B 514 1 O VAL B 512 N THR B 541 SHEET 4 BA 6 THR B 443 VAL B 447 1 O LEU B 444 N ILE B 513 SHEET 5 BA 6 ILE B 493 THR B 497 1 O LEU B 494 N VAL B 445 SHEET 6 BA 6 CYS B 467 ILE B 470 1 O THR B 468 N VAL B 495 SHEET 1 CA 6 ILE C 414 TRP C 420 0 SHEET 2 CA 6 GLY C 538 PHE C 544 1 O GLY C 538 N THR C 415 SHEET 3 CA 6 HIS C 511 ASN C 514 1 O VAL C 512 N THR C 541 SHEET 4 CA 6 THR C 443 VAL C 447 1 O LEU C 444 N ILE C 513 SHEET 5 CA 6 ILE C 493 THR C 497 1 O LEU C 494 N VAL C 445 SHEET 6 CA 6 CYS C 467 ILE C 470 1 O THR C 468 N VAL C 495 CRYST1 44.438 61.032 89.111 90.00 101.67 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022503 0.000000 0.004648 0.00000 SCALE2 0.000000 0.016385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011459 0.00000