PDB Short entry for 2JNJ
HEADER    TRANSCRIPTION                           26-JAN-07   2JNJ              
TITLE     SOLUTION STRUCTURE OF THE P8 TFIIH SUBUNIT                            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX TTD-A SUBUNIT;    
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 5, TFB5        
COMPND   5 ORTHOLOG;                                                            
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: GTF2H5, TTDA;                                                  
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3;                                  
SOURCE   9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR;                               
SOURCE  10 EXPRESSION_SYSTEM_VECTOR: PGEX                                       
KEYWDS    PROTEIN, TRANSCRIPTION, STRUCTURAL GENOMICS, STRUCTURAL PROTEOMICS IN 
KEYWDS   2 EUROPE 2, SPINE-2                                                    
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    M.VITORINO,R.A.ATKINSON,D.MORAS,A.POTERSZMAN,B.KIEFFER,STRUCTURAL     
AUTHOR   2 PROTEOMICS IN EUROPE 2 (SPINE-2)                                     
REVDAT   4   20-DEC-23 2JNJ    1       REMARK                                   
REVDAT   3   09-MAR-22 2JNJ    1       KEYWDS AUTHOR REMARK SEQADV              
REVDAT   2   24-FEB-09 2JNJ    1       VERSN                                    
REVDAT   1   10-APR-07 2JNJ    0                                                
JRNL        AUTH   M.VITORINO,F.COIN,O.ZLOBINSKAYA,R.A.ATKINSON,D.MORAS,        
JRNL        AUTH 2 J.M.EGLY,A.POTERSZMAN,B.KIEFFER                              
JRNL        TITL   SOLUTION STRUCTURE AND SELF-ASSOCIATION PROPERTIES OF THE P8 
JRNL        TITL 2 TFIIH SUBUNIT RESPONSIBLE FOR TRICHOTHIODYSTROPHY            
JRNL        REF    J.MOL.BIOL.                   V. 368   473 2007              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   17350038                                                     
JRNL        DOI    10.1016/J.JMB.2007.02.020                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR NIH, X-PLOR NIH                               
REMARK   3   AUTHORS     : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR     
REMARK   3                 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-   
REMARK   3                 PLOR NIH)                                            
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NMR WATERREFINE PROTOCOL                  
REMARK   4                                                                      
REMARK   4 2JNJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JAN-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000100055.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 50                                 
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 300 UM [U-99% 13C, U-99% 15N]      
REMARK 210                                   PROTEIN, 2.5 MM BETA-              
REMARK 210                                   MERCAPTOETHANOL, 50 MM SODIUM      
REMARK 210                                   CHLORIDE, 10 MM TRIS, 90% H2O/10%  
REMARK 210                                   D2O; 300 UM PROTEIN, 2.5 MM        
REMARK 210                                   BETA-MERCAPTOETHANOL, 50 MM        
REMARK 210                                   SODIUM CHLORIDE, 10 MM TRIS, 90%   
REMARK 210                                   H2O/10% D2O; 300 UM [U-99% 15N]    
REMARK 210                                   PROTEIN, 2.5 MM BETA-              
REMARK 210                                   MERCAPTOETHANOL, 50 MM SODIUM      
REMARK 210                                   CHLORIDE, 10 MM TRIS, 90% H2O/10%  
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC;    
REMARK 210                                   2D 1H-1H TOCSY; 2D 1H-1H NOESY;    
REMARK 210                                   3D HNCO; 3D HNCA; 3D HNCACB; 3D    
REMARK 210                                   HN(CO)CA; 3D HCCH-TOCSY; 3D HCCH-  
REMARK 210                                   COSY; 3D 1H-15N NOESY; 3D 1H-15N   
REMARK 210                                   TOCSY                              
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ; 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : DRX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : XEASY, ARIA, TALOS                 
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 40                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HZ1  LYS A    20     OD1  ASP A    40              1.52            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PRO A  17        0.57    -56.28                                   
REMARK 500  1 ASP A  42      100.25     45.65                                   
REMARK 500  1 ASP A  43      -46.23     68.82                                   
REMARK 500  1 GLN A  66      141.83   -171.95                                   
REMARK 500  1 PHE A  69       77.23   -102.25                                   
REMARK 500  1 GLN A  73      -29.33   -176.25                                   
REMARK 500  1 SER B   2      -62.56    -90.26                                   
REMARK 500  1 CYS B  15      -64.16   -150.08                                   
REMARK 500  1 ASP B  42       86.57    -27.93                                   
REMARK 500  1 ASP B  43      -54.37     62.33                                   
REMARK 500  1 GLN B  66      153.31    157.68                                   
REMARK 500  1 GLN B  73      -36.89   -144.12                                   
REMARK 500  2 SER A   2      -56.49   -155.40                                   
REMARK 500  2 VAL A   5       92.66     32.15                                   
REMARK 500  2 ASP A  42       72.20     58.71                                   
REMARK 500  2 ASP A  43      -48.83     69.05                                   
REMARK 500  2 GLN A  66      127.93    157.51                                   
REMARK 500  2 GLN A  73      -19.67    168.85                                   
REMARK 500  2 CYS B  15      -62.91   -158.34                                   
REMARK 500  2 ASP B  16      130.31   -173.12                                   
REMARK 500  2 ASN B  30       71.97     59.09                                   
REMARK 500  2 ASP B  42       87.43     54.02                                   
REMARK 500  2 ASP B  43      -41.42     67.27                                   
REMARK 500  2 GLN B  66      113.54    156.88                                   
REMARK 500  2 LEU B  71       75.08   -153.80                                   
REMARK 500  2 GLN B  73       18.19   -153.34                                   
REMARK 500  3 VAL A   5      102.48    -59.73                                   
REMARK 500  3 CYS A  15      -77.15   -128.28                                   
REMARK 500  3 ASP A  16      125.31   -178.26                                   
REMARK 500  3 ASN A  30       74.68     61.77                                   
REMARK 500  3 ASP A  42       89.45    -32.33                                   
REMARK 500  3 ASP A  43      -23.34     54.98                                   
REMARK 500  3 GLN A  66      120.92    161.58                                   
REMARK 500  3 SER A  70      100.83    -36.03                                   
REMARK 500  3 THR A  72      -47.17   -166.35                                   
REMARK 500  3 SER B   2      -72.96    -98.92                                   
REMARK 500  3 CYS B  15     -165.76   -115.82                                   
REMARK 500  3 ASP B  43      -25.04     62.70                                   
REMARK 500  3 GLN B  66      113.96    165.76                                   
REMARK 500  4 HIS A   3      -35.73   -135.16                                   
REMARK 500  4 MET A   4      -83.57   -116.52                                   
REMARK 500  4 VAL A   5       97.48     29.08                                   
REMARK 500  4 CYS A  15     -164.31   -162.51                                   
REMARK 500  4 PRO A  17      -11.79    -45.80                                   
REMARK 500  4 ASN A  30       83.31     54.59                                   
REMARK 500  4 ASP A  42       92.07    -21.29                                   
REMARK 500  4 ASP A  43      -38.02     66.60                                   
REMARK 500  4 GLN A  66      119.58    152.58                                   
REMARK 500  4 THR A  72      -36.47   -165.53                                   
REMARK 500  4 CYS B  15     -156.91   -165.65                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     123 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2JNJ A    4    74  UNP    Q6ZYL4   TF2H5_HUMAN      1     71             
DBREF  2JNJ B    4    74  UNP    Q6ZYL4   TF2H5_HUMAN      1     71             
SEQADV 2JNJ GLY A    1  UNP  Q6ZYL4              CLONING ARTIFACT               
SEQADV 2JNJ SER A    2  UNP  Q6ZYL4              CLONING ARTIFACT               
SEQADV 2JNJ HIS A    3  UNP  Q6ZYL4              CLONING ARTIFACT               
SEQADV 2JNJ GLY B    1  UNP  Q6ZYL4              CLONING ARTIFACT               
SEQADV 2JNJ SER B    2  UNP  Q6ZYL4              CLONING ARTIFACT               
SEQADV 2JNJ HIS B    3  UNP  Q6ZYL4              CLONING ARTIFACT               
SEQRES   1 A   74  GLY SER HIS MET VAL ASN VAL LEU LYS GLY VAL LEU ILE          
SEQRES   2 A   74  GLU CYS ASP PRO ALA MET LYS GLN PHE LEU LEU TYR LEU          
SEQRES   3 A   74  ASP GLU SER ASN ALA LEU GLY LYS LYS PHE ILE ILE GLN          
SEQRES   4 A   74  ASP ILE ASP ASP THR HIS VAL PHE VAL ILE ALA GLU LEU          
SEQRES   5 A   74  VAL ASN VAL LEU GLN GLU ARG VAL GLY GLU LEU MET ASP          
SEQRES   6 A   74  GLN ASN ALA PHE SER LEU THR GLN LYS                          
SEQRES   1 B   74  GLY SER HIS MET VAL ASN VAL LEU LYS GLY VAL LEU ILE          
SEQRES   2 B   74  GLU CYS ASP PRO ALA MET LYS GLN PHE LEU LEU TYR LEU          
SEQRES   3 B   74  ASP GLU SER ASN ALA LEU GLY LYS LYS PHE ILE ILE GLN          
SEQRES   4 B   74  ASP ILE ASP ASP THR HIS VAL PHE VAL ILE ALA GLU LEU          
SEQRES   5 B   74  VAL ASN VAL LEU GLN GLU ARG VAL GLY GLU LEU MET ASP          
SEQRES   6 B   74  GLN ASN ALA PHE SER LEU THR GLN LYS                          
HELIX    1   1 PRO A   17  ASN A   30  1                                  14    
HELIX    2   2 LEU A   52  LEU A   63  1                                  12    
HELIX    3   3 ASP B   16  ASN B   30  1                                  15    
HELIX    4   4 LEU B   52  LEU B   63  1                                  12    
SHEET    1   A 5 ILE A  37  ILE A  41  0                                        
SHEET    2   A 5 HIS A  45  VAL A  48 -1  O  PHE A  47   N  ILE A  38           
SHEET    3   A 5 ASN A   6  GLU A  14 -1  N  ILE A  13   O  VAL A  46           
SHEET    4   A 5 LEU B   8  GLU B  14 -1  O  LEU B  12   N  LEU A   8           
SHEET    5   A 5 HIS B  45  VAL B  48 -1  O  VAL B  48   N  VAL B  11           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000