PDB Short entry for 2JRC HEADER HYDROLASE 22-JUN-07 2JRC TITLE SOLUTION STRUCTURE OF PEPTIDYL-TRNA HYDROLASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS H37RV. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-TRNA HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PTH; COMPND 5 EC: 3.1.1.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 STRAIN: H37RV; SOURCE 4 GENE: PTH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS PTH, SOLUTION STRUCTURE, MYCOBACTERIUM TUBERCULOSIS H37RV, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR S.V.S.R.K.PULAVARTI,A.JAIN,P.P.PATHAK,A.ARORA REVDAT 4 20-DEC-23 2JRC 1 REMARK REVDAT 3 09-MAR-22 2JRC 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JRC 1 VERSN REVDAT 1 27-MAY-08 2JRC 0 JRNL AUTH S.V.PULAVARTI,A.JAIN,P.P.PATHAK,A.MAHMOOD,A.ARORA JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF PEPTIDYL-TRNA HYDROLASE JRNL TITL 2 FROM MYCOBACTERIUM TUBERCULOSIS H37RV. JRNL REF J.MOL.BIOL. V. 378 165 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18342886 JRNL DOI 10.1016/J.JMB.2008.02.027 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 1.0.5 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JRC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000100192. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O; 1 MM [U- REMARK 210 99% 13C; U-99% 15N] PROTEIN, REMARK 210 99.8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 135 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-40 REMARK 465 RES C SSSEQI REMARK 465 LYS A 192 REMARK 465 LEU A 193 REMARK 465 ALA A 194 REMARK 465 ALA A 195 REMARK 465 ALA A 196 REMARK 465 LEU A 197 REMARK 465 GLU A 198 REMARK 465 HIS A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 76 H ALA A 80 1.17 REMARK 500 O TYR A 68 H SER A 72 1.19 REMARK 500 O PHE A 154 H GLU A 158 1.31 REMARK 500 O ASP A 96 H ILE A 137 1.36 REMARK 500 O GLU A 158 H VAL A 162 1.37 REMARK 500 O ALA A 184 H VAL A 188 1.44 REMARK 500 O ALA A 160 HG1 THR A 164 1.47 REMARK 500 O ASP A 30 H ALA A 34 1.47 REMARK 500 O MET A 181 H GLN A 185 1.47 REMARK 500 O ILE A 165 H ALA A 169 1.48 REMARK 500 O VAL A 121 H LEU A 125 1.48 REMARK 500 H VAL A 7 O VAL A 61 1.49 REMARK 500 O ALA A 33 H GLY A 37 1.54 REMARK 500 O VAL A 92 H VAL A 133 1.55 REMARK 500 O LEU A 24 H VAL A 28 1.57 REMARK 500 H LEU A 6 O ASN A 89 1.57 REMARK 500 O TYR A 68 N SER A 72 2.06 REMARK 500 O ARG A 159 CD PRO A 163 2.08 REMARK 500 O ARG A 74 CD PRO A 78 2.11 REMARK 500 O ILE A 76 N ALA A 80 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 129.90 -170.48 REMARK 500 1 GLU A 3 136.32 -173.45 REMARK 500 1 ALA A 15 -136.70 -176.69 REMARK 500 1 ASN A 16 -80.81 57.83 REMARK 500 1 THR A 20 35.97 -76.86 REMARK 500 1 ARG A 21 14.24 58.60 REMARK 500 1 HIS A 22 9.25 -66.25 REMARK 500 1 PHE A 40 -179.70 -61.60 REMARK 500 1 HIS A 43 -127.64 -176.07 REMARK 500 1 LYS A 44 149.77 69.93 REMARK 500 1 SER A 55 -176.33 170.46 REMARK 500 1 ALA A 56 28.74 43.66 REMARK 500 1 LYS A 64 116.84 176.62 REMARK 500 1 PRO A 65 -156.49 -74.89 REMARK 500 1 ARG A 66 -87.83 -88.89 REMARK 500 1 TYR A 68 -80.93 62.56 REMARK 500 1 MET A 69 -90.91 -28.68 REMARK 500 1 LEU A 99 -105.55 -132.81 REMARK 500 1 ILE A 108 -83.37 -105.93 REMARK 500 1 GLU A 112 80.16 51.00 REMARK 500 1 HIS A 115 129.05 174.83 REMARK 500 1 THR A 127 121.46 68.38 REMARK 500 1 LYS A 128 13.99 -141.13 REMARK 500 1 ASP A 129 19.93 83.82 REMARK 500 1 PHE A 130 162.58 -46.68 REMARK 500 1 ASP A 145 89.26 -175.24 REMARK 500 1 LEU A 151 50.92 -103.30 REMARK 500 1 GLU A 152 -105.20 -77.39 REMARK 500 1 ASN A 153 51.52 157.07 REMARK 500 1 PHE A 154 29.22 -69.29 REMARK 500 1 THR A 155 -52.80 -20.14 REMARK 500 1 PRO A 156 -70.56 -74.99 REMARK 500 1 GLN A 179 -72.41 -147.87 REMARK 500 1 HIS A 189 22.65 -66.64 REMARK 500 2 GLU A 3 86.25 176.42 REMARK 500 2 PRO A 13 -160.38 -74.99 REMARK 500 2 ALA A 15 106.87 -173.94 REMARK 500 2 THR A 20 26.54 -75.59 REMARK 500 2 ARG A 21 -0.97 69.03 REMARK 500 2 HIS A 22 7.91 -65.92 REMARK 500 2 LEU A 36 -170.20 -65.52 REMARK 500 2 ALA A 38 121.94 -22.70 REMARK 500 2 LYS A 39 67.78 -161.53 REMARK 500 2 PHE A 40 -157.81 -139.76 REMARK 500 2 ARG A 45 -38.12 -37.80 REMARK 500 2 SER A 55 -168.03 -171.90 REMARK 500 2 ARG A 58 154.68 176.39 REMARK 500 2 LEU A 60 103.51 175.28 REMARK 500 2 LYS A 64 124.71 179.51 REMARK 500 2 PRO A 65 -157.75 -75.08 REMARK 500 REMARK 500 THIS ENTRY HAS 1382 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7055 RELATED DB: BMRB REMARK 900 ENTRY INFORMATION OF CHEMICAL SHIFT ASSIGNMENT DBREF 2JRC A 1 191 UNP P65865 PTH_MYCTU 1 191 SEQADV 2JRC LYS A 192 UNP P65865 EXPRESSION TAG SEQADV 2JRC LEU A 193 UNP P65865 EXPRESSION TAG SEQADV 2JRC ALA A 194 UNP P65865 EXPRESSION TAG SEQADV 2JRC ALA A 195 UNP P65865 EXPRESSION TAG SEQADV 2JRC ALA A 196 UNP P65865 EXPRESSION TAG SEQADV 2JRC LEU A 197 UNP P65865 EXPRESSION TAG SEQADV 2JRC GLU A 198 UNP P65865 EXPRESSION TAG SEQADV 2JRC HIS A 199 UNP P65865 EXPRESSION TAG SEQADV 2JRC HIS A 200 UNP P65865 EXPRESSION TAG SEQADV 2JRC HIS A 201 UNP P65865 EXPRESSION TAG SEQADV 2JRC HIS A 202 UNP P65865 EXPRESSION TAG SEQADV 2JRC HIS A 203 UNP P65865 EXPRESSION TAG SEQADV 2JRC HIS A 204 UNP P65865 EXPRESSION TAG SEQRES 1 A 204 MET ALA GLU PRO LEU LEU VAL VAL GLY LEU GLY ASN PRO SEQRES 2 A 204 GLY ALA ASN TYR ALA ARG THR ARG HIS ASN LEU GLY PHE SEQRES 3 A 204 VAL VAL ALA ASP LEU LEU ALA ALA ARG LEU GLY ALA LYS SEQRES 4 A 204 PHE LYS ALA HIS LYS ARG SER GLY ALA GLU VAL ALA THR SEQRES 5 A 204 GLY ARG SER ALA GLY ARG SER LEU VAL LEU ALA LYS PRO SEQRES 6 A 204 ARG CYS TYR MET ASN GLU SER GLY ARG GLN ILE GLY PRO SEQRES 7 A 204 LEU ALA LYS PHE TYR SER VAL ALA PRO ALA ASN ILE ILE SEQRES 8 A 204 VAL ILE HIS ASP ASP LEU ASP LEU GLU PHE GLY ARG ILE SEQRES 9 A 204 ARG LEU LYS ILE GLY GLY GLY GLU GLY GLY HIS ASN GLY SEQRES 10 A 204 LEU ARG SER VAL VAL ALA ALA LEU GLY THR LYS ASP PHE SEQRES 11 A 204 GLN ARG VAL ARG ILE GLY ILE GLY ARG PRO PRO GLY ARG SEQRES 12 A 204 LYS ASP PRO ALA ALA PHE VAL LEU GLU ASN PHE THR PRO SEQRES 13 A 204 ALA GLU ARG ALA GLU VAL PRO THR ILE CYS GLU GLN ALA SEQRES 14 A 204 ALA ASP ALA THR GLU LEU LEU ILE GLU GLN GLY MET GLU SEQRES 15 A 204 PRO ALA GLN ASN ARG VAL HIS ALA TRP LYS LEU ALA ALA SEQRES 16 A 204 ALA LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ALA A 15 ARG A 21 5 7 HELIX 2 2 ASN A 23 GLY A 37 1 15 HELIX 3 3 TYR A 68 SER A 84 1 17 HELIX 4 4 HIS A 115 GLY A 126 1 12 HELIX 5 5 ASP A 145 LEU A 151 1 7 HELIX 6 6 PHE A 154 GLN A 179 1 26 HELIX 7 7 GLY A 180 VAL A 188 1 9 SHEET 1 A 7 LYS A 41 HIS A 43 0 SHEET 2 A 7 ALA A 48 SER A 55 -1 O ALA A 48 N HIS A 43 SHEET 3 A 7 ARG A 58 LYS A 64 -1 O LYS A 64 N GLU A 49 SHEET 4 A 7 LEU A 5 GLY A 9 1 N VAL A 7 O VAL A 61 SHEET 5 A 7 ILE A 90 ASP A 96 1 O ILE A 91 N VAL A 8 SHEET 6 A 7 GLN A 131 ILE A 137 1 O ILE A 137 N ASP A 96 SHEET 7 A 7 PHE A 101 LYS A 107 -1 N LYS A 107 O ARG A 132 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000