PDB Short entry for 2JS0 HEADER SIGNALING PROTEIN 29-JUN-07 2JS0 TITLE SOLUTION STRUCTURE OF SECOND SH3 DOMAIN OF ADAPTOR NCK COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 2; COMPND 5 SYNONYM: NCK ADAPTOR PROTEIN 1, SH2/SH3 ADAPTOR PROTEIN NCK-ALPHA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCK1, NCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEV2 KEYWDS SH3 DOMAIN, ADAPTOR, SIGNALING, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.J.HAKE,K.CHOOWONGKOMON,C.R.CARLIN,F.D.SONNICHSEN REVDAT 4 09-MAR-22 2JS0 1 REMARK SEQADV REVDAT 3 24-FEB-09 2JS0 1 VERSN REVDAT 2 06-MAY-08 2JS0 1 JRNL REVDAT 1 26-FEB-08 2JS0 0 JRNL AUTH M.J.HAKE,K.CHOOWONGKOMON,O.KOSTENKO,C.R.CARLIN, JRNL AUTH 2 F.D.SONNICHSEN JRNL TITL SPECIFICITY DETERMINANTS OF A NOVEL NCK INTERACTION WITH THE JRNL TITL 2 JUXTAMEMBRANE DOMAIN OF THE EPIDERMAL GROWTH FACTOR JRNL TITL 3 RECEPTOR. JRNL REF BIOCHEMISTRY V. 47 3096 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18269246 JRNL DOI 10.1021/BI701549A REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JS0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000100216. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.1 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-99% 13C; U-99% REMARK 210 15N] NCK1-2, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM SODIUM AZIDE, 1 REMARK 210 MM EDTA, 4 MM DTT, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-1H NOESY; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 3D HNCO; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW 5.2.1, CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 37 -162.12 -123.63 REMARK 500 1 ASN A 45 93.54 -20.46 REMARK 500 1 GLU A 59 91.37 -170.56 REMARK 500 2 LEU A 3 118.10 -167.78 REMARK 500 2 ASN A 45 -90.10 68.11 REMARK 500 3 ASN A 4 74.38 65.43 REMARK 500 3 ASN A 45 -34.35 73.90 REMARK 500 3 GLU A 58 -71.87 -84.03 REMARK 500 3 GLU A 59 76.69 -107.90 REMARK 500 4 ASN A 4 42.88 -174.93 REMARK 500 4 ASN A 45 -90.92 66.68 REMARK 500 4 GLU A 58 -78.07 -65.13 REMARK 500 5 ASN A 4 33.33 -177.33 REMARK 500 5 MET A 32 -65.29 -94.88 REMARK 500 5 ASN A 45 103.69 -37.77 REMARK 500 5 GLN A 47 -168.64 -165.68 REMARK 500 5 GLU A 59 102.35 -169.45 REMARK 500 6 ASN A 45 -85.75 66.18 REMARK 500 6 GLU A 58 -73.14 -65.29 REMARK 500 7 ASN A 45 102.72 -59.61 REMARK 500 7 GLU A 58 -74.86 -76.52 REMARK 500 8 ASN A 45 -86.24 65.05 REMARK 500 8 GLU A 58 -70.33 -61.07 REMARK 500 8 GLU A 59 26.71 -160.85 REMARK 500 9 ASN A 45 -79.76 63.92 REMARK 500 9 GLU A 58 -87.09 -66.45 REMARK 500 10 LEU A 3 66.93 -109.72 REMARK 500 10 ASN A 4 31.77 -175.62 REMARK 500 10 GLU A 16 -32.29 -132.12 REMARK 500 10 MET A 32 -72.32 -94.68 REMARK 500 10 ASN A 45 -88.14 63.58 REMARK 500 10 GLU A 58 -70.87 -74.15 REMARK 500 11 ASN A 45 -93.91 61.40 REMARK 500 11 GLU A 58 -73.27 -83.38 REMARK 500 11 GLU A 59 74.53 -111.74 REMARK 500 12 SER A 36 0.84 -67.50 REMARK 500 12 ASN A 45 -91.06 64.46 REMARK 500 12 GLU A 58 -89.72 -65.20 REMARK 500 13 ASP A 37 -165.49 -110.00 REMARK 500 13 ASN A 45 95.80 -47.66 REMARK 500 13 GLU A 58 -75.40 -62.28 REMARK 500 14 ASN A 4 85.83 65.33 REMARK 500 14 ASN A 45 -86.87 64.31 REMARK 500 14 GLU A 58 -65.03 -92.17 REMARK 500 14 GLU A 59 106.46 -167.71 REMARK 500 15 SER A 2 174.41 54.82 REMARK 500 15 ASN A 4 69.57 178.58 REMARK 500 15 ASP A 37 -27.93 -148.28 REMARK 500 15 ASN A 45 -93.91 62.19 REMARK 500 15 GLU A 58 -80.46 -58.43 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2JS0 A 3 61 UNP P16333 NCK1_HUMAN 107 165 SEQADV 2JS0 GLY A 1 UNP P16333 EXPRESSION TAG SEQADV 2JS0 SER A 2 UNP P16333 EXPRESSION TAG SEQRES 1 A 61 GLY SER LEU ASN MET PRO ALA TYR VAL LYS PHE ASN TYR SEQRES 2 A 61 MET ALA GLU ARG GLU ASP GLU LEU SER LEU ILE LYS GLY SEQRES 3 A 61 THR LYS VAL ILE VAL MET GLU LYS CYS SER ASP GLY TRP SEQRES 4 A 61 TRP ARG GLY SER TYR ASN GLY GLN VAL GLY TRP PHE PRO SEQRES 5 A 61 SER ASN TYR VAL THR GLU GLU GLY ASP SHEET 1 A 5 GLN A 47 PRO A 52 0 SHEET 2 A 5 TRP A 39 TYR A 44 -1 N TYR A 44 O GLN A 47 SHEET 3 A 5 LYS A 28 LYS A 34 -1 N GLU A 33 O ARG A 41 SHEET 4 A 5 MET A 5 VAL A 9 -1 N MET A 5 O VAL A 31 SHEET 5 A 5 VAL A 56 THR A 57 -1 O THR A 57 N TYR A 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000