PDB Short entry for 2JTX HEADER TRANSCRIPTION 08-AUG-07 2JTX TITLE NMR STRUCTURE OF THE TFIIE-ALPHA CARBOXYL TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOXYL TERMINUS, RESIDUES 336-439; COMPND 5 SYNONYM: TFIIE-ALPHA, GENERAL TRANSCRIPTION FACTOR IIE SUBUNIT 1, COMPND 6 GENERAL TRANSCRIPTION FACTOR IIE 56 KDA SUBUNIT; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GTF2E1, TF2E1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-2T KEYWDS TFIIE, TFIIH, ACTIVATION DOMAINS, P53, TRANSCRIPTION, TRANSCRIPTION KEYWDS 2 REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.DI LELLO,J.G.OMICHINSKI REVDAT 4 16-MAR-22 2JTX 1 REMARK REVDAT 3 24-FEB-09 2JTX 1 VERSN REVDAT 2 22-JAN-08 2JTX 1 JRNL REVDAT 1 11-DEC-07 2JTX 0 JRNL AUTH P.DI LELLO,L.M.MILLER JENKINS,C.MAS,C.LANGLOIS,E.MALITSKAYA, JRNL AUTH 2 A.FRADET-TURCOTTE,J.ARCHAMBAULT,P.LEGAULT,J.G.OMICHINSKI JRNL TITL P53 AND TFIIEALPHA SHARE A COMMON BINDING SITE ON THE JRNL TITL 2 TFB1/P62 SUBUNIT OF TFIIH. JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 106 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18160537 JRNL DOI 10.1073/PNAS.0707892105 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1.C, CNS REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JTX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000100285. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM TFIIE-ALPHA;, 20 MM SODIUM REMARK 210 PHOSPHATE, 200 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 100% D2O; 1 REMARK 210 MM [U-100% 15N] TFIIE-ALPHA;, 20 REMARK 210 MM SODIUM PHOSPHATE, 200 MM REMARK 210 SODIUM CHLORIDE, 1 MM EDTA, 90% REMARK 210 H2O/10% D2O; 1 MM [U-100% 13C; U- REMARK 210 100% 15N] TFIIE-ALPHA;, 20 MM REMARK 210 SODIUM PHOSPHATE, 200 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] TFIIE-ALPHA;, 20 MM SODIUM REMARK 210 PHOSPHATE, 200 MM SODIUM REMARK 210 CHLORIDE, 1 MM EDTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D HNHA; 3D 1H REMARK 210 -15N NOESY; 3D HNCO; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-COSY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, NMRVIEW, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 334 REMARK 465 SER A 335 REMARK 465 MET A 336 REMARK 465 ALA A 337 REMARK 465 GLY A 338 REMARK 465 SER A 339 REMARK 465 VAL A 340 REMARK 465 GLY A 341 REMARK 465 ALA A 342 REMARK 465 ALA A 343 REMARK 465 ALA A 344 REMARK 465 PRO A 345 REMARK 465 VAL A 346 REMARK 465 THR A 347 REMARK 465 ALA A 348 REMARK 465 ALA A 349 REMARK 465 ASN A 350 REMARK 465 GLY A 351 REMARK 465 ASP A 352 REMARK 465 ASP A 353 REMARK 465 SER A 354 REMARK 465 GLU A 355 REMARK 465 SER A 356 REMARK 465 GLU A 357 REMARK 465 THR A 358 REMARK 465 SER A 359 REMARK 465 GLU A 360 REMARK 465 SER A 361 REMARK 465 ASP A 362 REMARK 465 ASP A 363 REMARK 465 ASP A 364 REMARK 465 SER A 365 REMARK 465 PRO A 366 REMARK 465 PRO A 367 REMARK 465 ARG A 368 REMARK 465 PRO A 369 REMARK 465 ALA A 370 REMARK 465 ALA A 371 REMARK 465 VAL A 372 REMARK 465 ALA A 373 REMARK 465 VAL A 374 REMARK 465 HIS A 375 REMARK 465 LYS A 376 REMARK 465 ARG A 377 REMARK 465 GLU A 378 REMARK 465 GLU A 379 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 389 79.94 -152.13 REMARK 500 1 ALA A 391 147.51 -175.88 REMARK 500 2 GLU A 388 -65.66 -150.82 REMARK 500 2 ASP A 436 86.10 -157.84 REMARK 500 2 LEU A 437 87.07 -158.08 REMARK 500 3 ASP A 384 -46.56 -175.87 REMARK 500 3 ASP A 436 84.72 -153.41 REMARK 500 3 LEU A 437 83.69 -151.25 REMARK 500 4 GLU A 383 -72.66 -102.63 REMARK 500 6 VAL A 390 79.88 -107.13 REMARK 500 6 ALA A 391 164.50 58.40 REMARK 500 6 ASP A 436 87.81 -159.89 REMARK 500 7 GLU A 382 -72.04 -153.04 REMARK 500 7 GLU A 383 54.05 -154.81 REMARK 500 7 ASP A 436 81.55 -150.40 REMARK 500 7 LEU A 437 86.58 -156.89 REMARK 500 8 LEU A 437 87.46 -159.56 REMARK 500 10 ASP A 384 -66.22 -129.59 REMARK 500 10 ASP A 436 87.82 -160.04 REMARK 500 12 ASP A 384 95.54 -167.62 REMARK 500 12 LEU A 437 83.06 -150.27 REMARK 500 13 ASP A 436 85.31 -154.07 REMARK 500 14 GLU A 388 -47.06 -160.09 REMARK 500 14 ALA A 391 145.30 -174.28 REMARK 500 14 ASP A 436 83.96 -152.14 REMARK 500 15 ASP A 384 -45.63 -130.93 REMARK 500 15 ASP A 385 95.49 -160.03 REMARK 500 15 PHE A 387 85.99 -160.04 REMARK 500 15 PHE A 434 45.98 -91.90 REMARK 500 16 GLU A 382 -75.84 -108.67 REMARK 500 16 PHE A 434 79.55 -156.71 REMARK 500 16 ASP A 436 82.92 -159.07 REMARK 500 17 GLU A 383 35.19 -98.21 REMARK 500 17 ALA A 391 163.70 58.52 REMARK 500 19 GLU A 383 -62.09 -132.24 REMARK 500 19 ASP A 436 83.97 -151.83 REMARK 500 20 LEU A 437 86.91 -157.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR'S SEQUENCE REFLECTS THE S->D CONFLICT OF REMARK 999 RESIDUE 352 BETWEEN DIFFERENT REFERENCES, AS REMARK 999 INDICATED IN UNP ENTRY P29083. DBREF 2JTX A 336 439 UNP P29083 T2EA_HUMAN 336 439 SEQADV 2JTX GLY A 334 UNP P29083 EXPRESSION TAG SEQADV 2JTX SER A 335 UNP P29083 EXPRESSION TAG SEQADV 2JTX ASP A 352 UNP P29083 SER 352 SEE REMARK 999 SEQRES 1 A 106 GLY SER MET ALA GLY SER VAL GLY ALA ALA ALA PRO VAL SEQRES 2 A 106 THR ALA ALA ASN GLY ASP ASP SER GLU SER GLU THR SER SEQRES 3 A 106 GLU SER ASP ASP ASP SER PRO PRO ARG PRO ALA ALA VAL SEQRES 4 A 106 ALA VAL HIS LYS ARG GLU GLU ASP GLU GLU GLU ASP ASP SEQRES 5 A 106 GLU PHE GLU GLU VAL ALA ASP ASP PRO ILE VAL MET VAL SEQRES 6 A 106 ALA GLY ARG PRO PHE SER TYR SER GLU VAL SER GLN ARG SEQRES 7 A 106 PRO GLU LEU VAL ALA GLN MET THR PRO GLU GLU LYS GLU SEQRES 8 A 106 ALA TYR ILE ALA MET GLY GLN ARG MET PHE GLU ASP LEU SEQRES 9 A 106 PHE GLU HELIX 1 1 TYR A 405 ARG A 411 1 7 HELIX 2 2 ARG A 411 MET A 418 1 8 HELIX 3 3 THR A 419 PHE A 434 1 16 SHEET 1 A 2 ILE A 395 VAL A 398 0 SHEET 2 A 2 ARG A 401 SER A 404 -1 O ARG A 401 N VAL A 398 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000