PDB Short entry for 2JV1 HEADER HORMONE 11-SEP-07 2JV1 TITLE NMR STRUCTURE OF HUMAN INSULIN MONOMER IN 35% CD3CN ZINC FREE, 50 TITLE 2 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INSULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: INSULIN A CHAIN: RESIDUES 90-110; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INSULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: INSULIN B CHAIN: RESIDUES 25-54; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: INS; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN INSULIN, 35% CD3CN, MONOMER, CARBOHYDRATE METABOLISM, CLEAVAGE KEYWDS 2 ON PAIR OF BASIC RESIDUES, DIABETES MELLITUS, DISEASE MUTATION, KEYWDS 3 GLUCOSE METABOLISM, HORMONE, PHARMACEUTICAL, SECRETED EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR W.BOCIAN,L.KOZERSKI REVDAT 4 16-MAR-22 2JV1 1 REMARK REVDAT 3 24-FEB-09 2JV1 1 VERSN REVDAT 2 08-JAN-08 2JV1 1 JRNL REVDAT 1 11-DEC-07 2JV1 0 JRNL AUTH W.BOCIAN,J.SITKOWSKI,E.BEDNAREK,A.TARNOWSKA,R.KAWECKI, JRNL AUTH 2 L.KOZERSKI JRNL TITL STRUCTURE OF HUMAN INSULIN MONOMER IN WATER/ACETONITRILE JRNL TITL 2 SOLUTION. JRNL REF J.BIOMOL.NMR V. 40 55 2008 JRNL REFN ISSN 0925-2738 JRNL PMID 18040865 JRNL DOI 10.1007/S10858-007-9206-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JV1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000100325. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 3.6 REMARK 210 IONIC STRENGTH : NONE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.0 MM INSULIN_CHAIN_A, 2.0 MM REMARK 210 INSULIN_CHAIN_B, 35% CD3CN/ 65% REMARK 210 H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AMBER 9 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 21 TYR B 26 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 35 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 36 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 43 ARG B 22 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 7 -60.10 -97.38 REMARK 500 1 SER A 9 -163.39 -102.49 REMARK 500 2 SER A 9 -149.96 -107.63 REMARK 500 4 SER A 9 -154.54 -104.24 REMARK 500 5 SER A 9 -139.54 -126.06 REMARK 500 5 PRO B 28 -124.74 -79.60 REMARK 500 6 VAL B 2 127.17 85.20 REMARK 500 6 PRO B 28 -163.02 -59.27 REMARK 500 7 ASN B 3 123.76 72.63 REMARK 500 7 TYR B 26 -96.47 54.58 REMARK 500 7 THR B 27 90.13 63.88 REMARK 500 8 SER A 9 -152.58 -111.35 REMARK 500 8 VAL B 2 127.30 78.81 REMARK 500 8 LYS B 29 148.32 164.21 REMARK 500 9 SER A 9 -149.91 -102.37 REMARK 500 10 SER A 9 -140.69 -108.64 REMARK 500 11 SER A 9 -146.89 -97.92 REMARK 500 12 SER A 9 -161.11 -104.42 REMARK 500 12 PRO B 28 -135.41 -85.33 REMARK 500 13 PRO B 28 -124.00 -88.53 REMARK 500 14 PRO B 28 -85.34 -82.04 REMARK 500 15 SER A 9 -131.28 -115.41 REMARK 500 16 PRO B 28 -132.80 -81.42 REMARK 500 17 PRO B 28 -142.11 -86.72 REMARK 500 17 LYS B 29 12.47 -69.78 REMARK 500 18 SER A 9 -155.86 -107.91 REMARK 500 19 PRO B 28 -169.50 -75.12 REMARK 500 20 THR B 27 127.42 -170.00 REMARK 500 20 PRO B 28 -156.50 -87.96 REMARK 500 21 ILE A 2 -58.60 -166.97 REMARK 500 21 SER A 9 -160.20 -121.08 REMARK 500 21 PRO B 28 65.21 -102.17 REMARK 500 21 LYS B 29 6.18 -151.48 REMARK 500 22 SER A 9 -132.40 -108.77 REMARK 500 22 PRO B 28 -169.96 -77.38 REMARK 500 23 GLN A 5 -60.06 -104.72 REMARK 500 23 SER A 9 -166.20 -117.78 REMARK 500 23 TYR B 26 -59.74 64.60 REMARK 500 24 SER A 9 -152.85 -90.47 REMARK 500 24 ASN B 3 128.21 72.81 REMARK 500 24 TYR B 26 117.86 -160.96 REMARK 500 25 SER A 9 -161.60 -107.74 REMARK 500 25 PRO B 28 -168.87 -76.25 REMARK 500 26 GLU B 21 -7.93 78.06 REMARK 500 27 SER A 9 -135.70 -114.29 REMARK 500 28 SER A 9 -149.60 -104.52 REMARK 500 29 SER A 9 -156.26 -135.98 REMARK 500 29 ASN B 3 131.09 69.30 REMARK 500 29 THR B 27 138.77 -173.60 REMARK 500 30 THR B 27 145.70 -177.44 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 25 TYR B 26 5 -148.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 27 TYR B 26 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2JV1 A 1 21 UNP P01308 INS_HUMAN 90 110 DBREF 2JV1 B 1 30 UNP P01308 INS_HUMAN 25 54 SEQRES 1 A 21 GLY ILE VAL GLU GLN CYS CYS THR SER ILE CYS SER LEU SEQRES 2 A 21 TYR GLN LEU GLU ASN TYR CYS ASN SEQRES 1 B 30 PHE VAL ASN GLN HIS LEU CYS GLY SER HIS LEU VAL GLU SEQRES 2 B 30 ALA LEU TYR LEU VAL CYS GLY GLU ARG GLY PHE PHE TYR SEQRES 3 B 30 THR PRO LYS THR HELIX 1 1 GLY A 1 CYS A 6 1 6 HELIX 2 2 LEU A 13 GLU A 17 1 5 HELIX 3 3 ASN A 18 CYS A 20 5 3 HELIX 4 4 CYS B 7 GLY B 20 1 14 HELIX 5 5 GLU B 21 GLY B 23 5 3 SHEET 1 A 2 CYS A 11 SER A 12 0 SHEET 2 A 2 ASN B 3 GLN B 4 -1 O GLN B 4 N CYS A 11 SSBOND 1 CYS A 6 CYS A 11 1555 1555 2.03 SSBOND 2 CYS A 7 CYS B 7 1555 1555 2.04 SSBOND 3 CYS A 20 CYS B 19 1555 1555 2.03 CISPEP 1 GLY A 1 ILE A 2 9 6.83 CISPEP 2 PHE B 1 VAL B 2 13 0.22 CISPEP 3 PHE B 1 VAL B 2 14 -1.31 CISPEP 4 LYS B 29 THR B 30 14 -6.56 CISPEP 5 THR B 27 PRO B 28 21 -24.18 CISPEP 6 PHE B 1 VAL B 2 24 3.21 CISPEP 7 GLY A 1 ILE A 2 27 -4.83 CISPEP 8 GLY A 1 ILE A 2 28 12.44 CISPEP 9 GLY B 20 GLU B 21 28 10.91 CISPEP 10 GLY A 1 ILE A 2 31 -4.87 CISPEP 11 GLY A 1 ILE A 2 35 1.94 CISPEP 12 GLY A 1 ILE A 2 41 -4.80 CISPEP 13 GLY A 1 ILE A 2 45 -2.29 CISPEP 14 GLY A 1 ILE A 2 47 3.38 CISPEP 15 PHE B 1 VAL B 2 47 3.56 CISPEP 16 GLY B 20 GLU B 21 48 0.33 CISPEP 17 PHE B 1 VAL B 2 49 -8.11 CISPEP 18 GLY B 20 GLU B 21 50 10.84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000