PDB Short entry for 2JVX
HEADER    METAL BINDING PROTEIN                   28-SEP-07   2JVX              
TITLE     SOLUTION STRUCTURE OF HUMAN NEMO ZINC FINGER                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NF-KAPPA-B ESSENTIAL MODULATOR;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: ZINC FINGER DOMAIN;                                        
COMPND   5 SYNONYM: NEMO, NF-KAPPA-B ESSENTIAL MODIFIER, INHIBITOR OF NUCLEAR   
COMPND   6 FACTOR KAPPA-B KINASE SUBUNIT GAMMA, IKB KINASE SUBUNIT GAMMA, I-    
COMPND   7 KAPPA-B KINASE GAMMA, IKK-GAMMA, IKKG, IKB KINASE-ASSOCIATED PROTEIN 
COMPND   8 1, IKKAP1, FIP-3;                                                    
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 OTHER_DETAILS: SYNTHETIC PEPTIDE, TERMINI-BLOCKED BY N-ACETYL AND C- 
SOURCE   4 AMIDE GROUPS                                                         
KEYWDS    CCHC CLASSICAL ZINC FINGER, NEMO ZINC FINGER, BETA-BETA-ALPHA FOLD,   
KEYWDS   2 COILED COIL, CYTOPLASM, DISEASE MUTATION, ECTODERMAL DYSPLASIA,      
KEYWDS   3 HOST-VIRUS INTERACTION, NUCLEUS, TRANSCRIPTION, TRANSCRIPTION        
KEYWDS   4 REGULATION, METAL BINDING PROTEIN                                    
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    F.CORDIER,E.VINOLO,M.VERON,M.DELEPIERRE,F.AGOU                        
REVDAT   4   19-FEB-20 2JVX    1       REMARK SEQADV                            
REVDAT   3   24-FEB-09 2JVX    1       VERSN                                    
REVDAT   2   08-APR-08 2JVX    1       JRNL                                     
REVDAT   1   18-MAR-08 2JVX    0                                                
JRNL        AUTH   F.CORDIER,E.VINOLO,M.VERON,M.DELEPIERRE,F.AGOU               
JRNL        TITL   SOLUTION STRUCTURE OF NEMO ZINC FINGER AND IMPACT OF AN      
JRNL        TITL 2 ANHIDROTIC ECTODERMAL DYSPLASIA WITH                         
JRNL        TITL 3 IMMUNODEFICIENCY-RELATED POINT MUTATION.                     
JRNL        REF    J.MOL.BIOL.                   V. 377  1419 2008              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   18313693                                                     
JRNL        DOI    10.1016/J.JMB.2008.01.048                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : VNMR 6.1C, ARIA 1.2                                  
REMARK   3   AUTHORS     : VARIAN (VNMR), LINGE, J.P. ET AL. (ARIA)             
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE STRUCTURE WAS DETERMINED USING NOES   
REMARK   3  AND DIHEDRAL ANGLES DATA. TETRAHEDRAL GEOMETRY OF THE ZINC          
REMARK   3  COORDINATION WAS ASSUMED. OF THE 200 CALCULATED CONFORMERS, THE     
REMARK   3  80 CONFORMERS WITH THE LOWEST TOTAL ENERGY WERE REFINED IN          
REMARK   3  WATER. THE 10 REFINED CONFORMERS OF LOWEST ENERGY REPRESENT THE     
REMARK   3  FINAL ENSEMBLE.                                                     
REMARK   4                                                                      
REMARK   4 2JVX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-07.                  
REMARK 100 THE DEPOSITION ID IS D_1000100357.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.3                                
REMARK 210  IONIC STRENGTH                 : 0                                  
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1 MM NEMO ZF, 2 MM ZNS04, 2 MM     
REMARK 210                                   TCEP, 90% H2O/10% D2O              
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-1H NOESY; 2D 1H-1H TOCSY;    
REMARK 210                                   2D PURGED-COSY                     
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 2.2, NMRVIEW 5.03, ARIA    
REMARK 210                                   1.2                                
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 200                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 PRO A   7       35.23    -77.13                                   
REMARK 500  2 PRO A   7       43.75    -77.81                                   
REMARK 500  2 LYS A   8      -40.96   -149.10                                   
REMARK 500  3 ASP A   3       76.51     49.29                                   
REMARK 500  3 LYS A   8      -74.48   -124.85                                   
REMARK 500  4 PRO A   7       28.60    -73.18                                   
REMARK 500  4 LYS A   8      -33.10   -141.98                                   
REMARK 500  5 ASP A   3      -67.61   -104.01                                   
REMARK 500  5 ILE A  27      -77.45     73.89                                   
REMARK 500  6 ASP A   3     -160.94     66.29                                   
REMARK 500  6 ILE A  27      -87.23     69.35                                   
REMARK 500  7 SER A   2      162.77     68.58                                   
REMARK 500  7 PRO A   7       42.49    -78.90                                   
REMARK 500  7 LYS A   8      -39.48   -148.64                                   
REMARK 500  7 ILE A  27      -72.30    -63.71                                   
REMARK 500  8 ASP A   3     -169.64   -116.10                                   
REMARK 500  8 PRO A   7       25.72    -74.95                                   
REMARK 500  9 ASP A   3     -169.81     62.85                                   
REMARK 500  9 LYS A   8      -78.45   -118.54                                   
REMARK 500 10 SER A   2      -70.95   -134.70                                   
REMARK 500 10 PRO A   7       32.21    -76.49                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              ZN A  29  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A   6   SG                                                     
REMARK 620 2 CYS A   9   SG  109.3                                              
REMARK 620 3 HIS A  22   NE2 108.0 103.1                                        
REMARK 620 4 CYS A  26   SG  110.5 111.2 114.4                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 29                   
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2JVY   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 15499   RELATED DB: BMRB                                 
DBREF  2JVX A    3    28  UNP    Q9Y6K9   NEMO_HUMAN     394    419             
SEQADV 2JVX SER A    1  UNP  Q9Y6K9              INSERTION                      
SEQADV 2JVX SER A    2  UNP  Q9Y6K9              INSERTION                      
SEQRES   1 A   28  SER SER ASP PHE CYS CYS PRO LYS CYS GLN TYR GLN ALA          
SEQRES   2 A   28  PRO ASP MET ASP THR LEU GLN ILE HIS VAL MET GLU CYS          
SEQRES   3 A   28  ILE GLU                                                      
HET     ZN  A  29       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    ZN 2+                                                        
HELIX    1   1 ASP A   15  CYS A   26  1                                  12    
SHEET    1   A 2 PHE A   4  CYS A   5  0                                        
SHEET    2   A 2 GLN A  12  ALA A  13 -1  O  ALA A  13   N  PHE A   4           
LINK         SG  CYS A   6                ZN    ZN A  29     1555   1555  2.30  
LINK         SG  CYS A   9                ZN    ZN A  29     1555   1555  2.32  
LINK         NE2 HIS A  22                ZN    ZN A  29     1555   1555  2.08  
LINK         SG  CYS A  26                ZN    ZN A  29     1555   1555  2.34  
SITE     1 AC1  6 CYS A   6  LYS A   8  CYS A   9  TYR A  11                    
SITE     2 AC1  6 HIS A  22  CYS A  26                                          
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000