PDB Short entry for 2JW2 HEADER LIPID BINDING PROTEIN 03-OCT-07 2JW2 TITLE VALIDATION OF INTER-HELICAL ORIENTATION OF THE STERIL-ALPHA-MOTIF OF TITLE 2 HUMAN DELETED IN LIVER CANCER 2 BY RESIDUAL DIPOLAR COUPLINGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAR-RELATED LIPID TRANSFER PROTEIN 13; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DLC2-SAM; COMPND 5 SYNONYM: STARD13, START DOMAIN-CONTAINING PROTEIN 13, 46H23.2, COMPND 6 DELETED IN LIVER CANCER PROTEIN 2, RHO GTPASE-ACTIVATING PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DLC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-32M KEYWDS DLC2-SAM, RDC REFINEMENT, ALTERNATIVE SPLICING, ANTI-ONCOGENE, CELL KEYWDS 2 CYCLE, CYTOPLASM, GTPASE ACTIVATION, POLYMORPHISM, LIPID BINDING KEYWDS 3 PROTEIN EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR H.LI,K.SZE,K.FUNG REVDAT 3 16-MAR-22 2JW2 1 REMARK SEQADV REVDAT 2 24-FEB-09 2JW2 1 VERSN REVDAT 1 21-OCT-08 2JW2 0 JRNL AUTH H.LI,K.SZE,K.FUNG,H.SUN JRNL TITL VALIDATION OF INTER-HELICAL ORIENTATION OF THE JRNL TITL 2 STERIL-ALPHA-MOTIF OF HUMAN DELETED IN LIVER CANCER 2 BY JRNL TITL 3 RESIDUAL DIPOLAR COUPLINGS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.17.2 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JW2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000100362. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 311 REMARK 210 PH : 7.1; 7.1 REMARK 210 IONIC STRENGTH : 0.02; 0.02 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 5% DMPC/DHPC 0.8 MM REMARK 210 TTAB BICELLES REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 14 96.61 -53.05 REMARK 500 1 SER A 43 6.98 81.97 REMARK 500 1 ASN A 48 84.90 -54.31 REMARK 500 1 ASP A 57 102.81 -38.91 REMARK 500 1 GLU A 60 127.88 57.82 REMARK 500 1 MET A 80 17.78 51.61 REMARK 500 2 HIS A 5 14.97 -166.06 REMARK 500 2 HIS A 6 27.27 -75.88 REMARK 500 2 HIS A 7 -168.59 52.53 REMARK 500 2 SER A 8 -143.69 -157.51 REMARK 500 2 ARG A 14 -149.36 -63.88 REMARK 500 2 GLU A 18 -70.18 -71.14 REMARK 500 2 SER A 43 20.58 80.14 REMARK 500 2 ASN A 48 95.96 -64.06 REMARK 500 2 ASP A 57 153.10 57.47 REMARK 500 2 PHE A 58 31.32 -149.62 REMARK 500 2 LEU A 59 -70.47 62.63 REMARK 500 2 GLU A 60 102.76 -40.32 REMARK 500 2 SER A 79 29.39 -79.81 REMARK 500 2 MET A 80 -90.83 46.50 REMARK 500 3 HIS A 2 -178.18 53.17 REMARK 500 3 HIS A 4 118.51 -166.26 REMARK 500 3 ARG A 14 -87.11 49.71 REMARK 500 3 GLU A 18 -70.11 -53.72 REMARK 500 3 ALA A 37 -33.64 -39.15 REMARK 500 3 SER A 43 10.29 80.34 REMARK 500 3 ASN A 48 83.65 -56.83 REMARK 500 3 HIS A 56 -73.05 -106.58 REMARK 500 3 ASP A 57 -80.38 54.58 REMARK 500 3 PHE A 58 171.09 56.21 REMARK 500 3 LEU A 59 -140.25 39.44 REMARK 500 3 GLU A 60 -154.24 -112.39 REMARK 500 3 MET A 80 92.79 54.35 REMARK 500 4 HIS A 2 -70.14 -154.65 REMARK 500 4 HIS A 7 -113.99 -84.44 REMARK 500 4 SER A 8 80.88 -157.68 REMARK 500 4 ARG A 14 15.60 -140.55 REMARK 500 4 PHE A 33 56.82 -143.27 REMARK 500 4 ALA A 37 -35.35 -39.70 REMARK 500 4 SER A 43 12.27 80.57 REMARK 500 4 ASN A 48 96.47 -63.96 REMARK 500 4 ASP A 55 -60.34 -90.82 REMARK 500 4 HIS A 56 33.56 -71.29 REMARK 500 4 ASP A 57 18.35 -140.23 REMARK 500 4 PHE A 58 -23.52 -39.98 REMARK 500 4 LEU A 59 -177.17 -67.11 REMARK 500 4 GLU A 60 153.04 -45.58 REMARK 500 4 ASP A 62 -5.38 -56.19 REMARK 500 4 MET A 80 153.84 71.53 REMARK 500 5 HIS A 6 -112.00 -151.88 REMARK 500 REMARK 500 THIS ENTRY HAS 191 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H80 RELATED DB: PDB REMARK 900 ORIGINAL STRUCTURE DBREF 2JW2 A 17 81 UNP Q9Y3M8 STA13_HUMAN 56 120 SEQADV 2JW2 MET A 1 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 HIS A 2 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 HIS A 3 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 HIS A 4 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 HIS A 5 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 HIS A 6 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 HIS A 7 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 SER A 8 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 SER A 9 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 GLY A 10 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 LEU A 11 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 VAL A 12 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 PRO A 13 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 ARG A 14 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 GLY A 15 UNP Q9Y3M8 EXPRESSION TAG SEQADV 2JW2 SER A 16 UNP Q9Y3M8 EXPRESSION TAG SEQRES 1 A 81 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 81 ARG GLY SER GLN GLU ILE GLU ALA LYS GLU ALA CYS ASP SEQRES 3 A 81 TRP LEU ARG ALA ALA GLY PHE PRO GLN TYR ALA GLN LEU SEQRES 4 A 81 TYR GLU ASP SER GLN PHE PRO ILE ASN ILE VAL ALA VAL SEQRES 5 A 81 LYS ASN ASP HIS ASP PHE LEU GLU LYS ASP LEU VAL GLU SEQRES 6 A 81 PRO LEU CYS ARG ARG LEU ASN THR LEU ASN LYS CYS ALA SEQRES 7 A 81 SER MET LYS HELIX 1 1 SER A 16 GLY A 32 1 17 HELIX 2 2 PHE A 33 SER A 43 1 11 HELIX 3 3 ASN A 48 HIS A 56 1 9 HELIX 4 4 GLU A 60 LEU A 63 5 4 HELIX 5 5 VAL A 64 ALA A 78 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000