PDB Short entry for 2JW4 HEADER SIGNALING PROTEIN 05-OCT-07 2JW4 TITLE NMR SOLUTION STRUCTURE OF THE N-TERMINAL SH3 DOMAIN OF HUMAN NCKALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 1 DOMAIN, SEQUENCE DATABASE RESIDUES 1-63; COMPND 5 SYNONYM: NCK ADAPTOR PROTEIN 1, SH2/SH3 ADAPTOR PROTEIN NCK-ALPHA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCK1, NCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX4T KEYWDS SH3 DOMAIN, CYTOPLASM, PHOSPHORYLATION, SH2 DOMAIN, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.M.SANTIVERI,A.BORROTO,L.SIMON,M.RICO,A.R.ORTIZ,B.ALARCON,M.JIMENEZ REVDAT 3 16-MAR-22 2JW4 1 REMARK SEQADV REVDAT 2 27-JAN-09 2JW4 1 JRNL VERSN REVDAT 1 26-AUG-08 2JW4 0 JRNL AUTH C.M.SANTIVERI,A.BORROTO,L.SIMON,M.RICO,B.ALARCON,M.A.JIMENEZ JRNL TITL INTERACTION BETWEEN THE N-TERMINAL SH3 DOMAIN OF NCKALPHA JRNL TITL 2 AND CD3EPSILON-DERIVED PEPTIDES: NON-CANONICAL AND CANONICAL JRNL TITL 3 RECOGNITION MOTIFS JRNL REF BIOCHEM.BIOPHYS.ACTA V.1794 110 2009 JRNL REF 2 PROTEINS & PROTEOMICS JRNL REFN ISSN 1570-9639 JRNL PMID 18955169 JRNL DOI 10.1016/J.BBAPAP.2008.09.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2JW4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000100364. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.7 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM NCKALPHA-SH3.1, 50 MM REMARK 210 SODIUM PHOSPHATE, 90 % H2O, 10 % REMARK 210 [U-100% 2H] D2O, 0.1 MM DSS, 90% REMARK 210 H2O/10% D2O; 1 MM NCKALPHA-SH3.1, REMARK 210 , 50 MM SODIUM PHOSPHATE, 100 % REMARK 210 [U-100% 2H] D2O, 0.1 MM DSS, 100% REMARK 210 D2O; 1 MM [U-100% 15N] NCKALPHA- REMARK 210 SH3.1, 50 MM SODIUM PHOSPHATE, REMARK 210 90 % H2O, 10 % [U-100% 2H] D2O, REMARK 210 0.1 MM DSS, 90% H2O/10% D2O; 1.2 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 NCKALPHA-SH3.1, 50 MM SODIUM REMARK 210 PHOSPHATE, 90 % H2O, 10 % [U-100% REMARK 210 2H] D2O, 0.1 MM DSS, 90% H2O/10% REMARK 210 D2O; 1.2 MM [U-100% 13C; U-100% REMARK 210 15N] NCKALPHA-SH3.1, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 % [U-100% REMARK 210 2H] D2O, 0.1 MM DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D 1H-15N NOESY; 3D HNCO; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D CBCANH; REMARK 210 3D HBHA(CO)NH; 3D HACANH; 2D 1H- REMARK 210 13C HSQC; 3D 1H-13C NOESY; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, XWINNMR, MOLMOL, REMARK 210 PROCHECKNMR, SPARKY, PROMOTIF REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 83.87 -156.87 REMARK 500 1 MET A 4 148.21 67.79 REMARK 500 1 GLU A 7 38.45 -140.30 REMARK 500 1 ALA A 18 90.97 -42.69 REMARK 500 1 ASN A 29 35.50 79.42 REMARK 500 1 LEU A 35 -60.17 -103.14 REMARK 500 1 ASN A 49 -3.28 73.96 REMARK 500 1 SER A 56 35.54 -89.94 REMARK 500 1 LYS A 62 -166.83 -109.40 REMARK 500 1 ALA A 65 -157.04 -114.25 REMARK 500 1 SER A 71 83.04 35.47 REMARK 500 2 ALA A 5 176.78 -57.79 REMARK 500 2 GLU A 6 106.16 57.29 REMARK 500 2 ALA A 18 88.68 -47.17 REMARK 500 2 ASN A 29 40.45 74.68 REMARK 500 2 ASN A 49 -4.55 74.59 REMARK 500 2 SER A 64 85.40 -58.90 REMARK 500 2 ARG A 66 128.47 60.92 REMARK 500 2 ASN A 70 117.87 -178.70 REMARK 500 2 SER A 71 120.72 59.85 REMARK 500 3 SER A 2 50.97 39.57 REMARK 500 3 ALA A 5 177.37 -56.94 REMARK 500 3 ALA A 18 91.00 -42.35 REMARK 500 3 ASN A 29 41.74 75.12 REMARK 500 3 ASN A 49 -3.86 74.29 REMARK 500 3 ASN A 63 38.15 -171.45 REMARK 500 3 ARG A 66 120.19 64.06 REMARK 500 3 ALA A 68 35.55 -83.66 REMARK 500 4 MET A 4 136.68 67.75 REMARK 500 4 GLU A 6 161.33 64.20 REMARK 500 4 ALA A 18 89.68 -47.53 REMARK 500 4 ASN A 29 41.44 77.32 REMARK 500 4 LEU A 35 -61.28 -103.98 REMARK 500 4 ASN A 49 -2.13 74.03 REMARK 500 4 ASN A 63 45.79 -89.61 REMARK 500 4 SER A 64 48.08 -88.31 REMARK 500 4 ASN A 70 166.23 67.24 REMARK 500 4 SER A 71 91.24 51.91 REMARK 500 5 MET A 4 -44.12 -168.76 REMARK 500 5 GLU A 6 136.59 65.28 REMARK 500 5 ALA A 18 92.41 -38.89 REMARK 500 5 ASN A 29 37.52 74.28 REMARK 500 5 ASN A 49 -2.64 73.78 REMARK 500 5 SER A 56 35.71 -86.45 REMARK 500 5 ASN A 63 69.50 38.60 REMARK 500 5 ARG A 66 100.52 53.04 REMARK 500 5 ALA A 68 36.13 -89.77 REMARK 500 5 ALA A 69 92.00 -55.64 REMARK 500 5 ASN A 70 -47.30 -152.81 REMARK 500 5 SER A 71 88.21 34.72 REMARK 500 REMARK 500 THIS ENTRY HAS 164 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15510 RELATED DB: BMRB DBREF 2JW4 A 4 66 UNP P16333 NCK1_HUMAN 1 63 SEQADV 2JW4 GLY A 1 UNP P16333 EXPRESSION TAG SEQADV 2JW4 SER A 2 UNP P16333 EXPRESSION TAG SEQADV 2JW4 THR A 3 UNP P16333 EXPRESSION TAG SEQADV 2JW4 ALA A 67 UNP P16333 EXPRESSION TAG SEQADV 2JW4 ALA A 68 UNP P16333 EXPRESSION TAG SEQADV 2JW4 ALA A 69 UNP P16333 EXPRESSION TAG SEQADV 2JW4 ASN A 70 UNP P16333 EXPRESSION TAG SEQADV 2JW4 SER A 71 UNP P16333 EXPRESSION TAG SEQADV 2JW4 SER A 72 UNP P16333 EXPRESSION TAG SEQRES 1 A 72 GLY SER THR MET ALA GLU GLU VAL VAL VAL VAL ALA LYS SEQRES 2 A 72 PHE ASP TYR VAL ALA GLN GLN GLU GLN GLU LEU ASP ILE SEQRES 3 A 72 LYS LYS ASN GLU ARG LEU TRP LEU LEU ASP ASP SER LYS SEQRES 4 A 72 SER TRP TRP ARG VAL ARG ASN SER MET ASN LYS THR GLY SEQRES 5 A 72 PHE VAL PRO SER ASN TYR VAL GLU ARG LYS ASN SER ALA SEQRES 6 A 72 ARG ALA ALA ALA ASN SER SER SHEET 1 A 5 THR A 51 VAL A 54 0 SHEET 2 A 5 TRP A 42 ARG A 45 -1 N VAL A 44 O GLY A 52 SHEET 3 A 5 ARG A 31 ASP A 36 -1 N ASP A 36 O ARG A 43 SHEET 4 A 5 VAL A 8 VAL A 11 -1 N VAL A 10 O LEU A 32 SHEET 5 A 5 GLU A 60 ARG A 61 -1 O GLU A 60 N VAL A 11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000