PDB Short entry for 2JWA HEADER TRANSFERASE 09-OCT-07 2JWA TITLE ERBB2 TRANSMEMBRANE SEGMENT DIMER SPATIAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 641-684; COMPND 5 SYNONYM: P185ERBB2, C-ERBB-2, NEU PROTO-ONCOGENE, TYROSINE KINASE- COMPND 6 TYPE CELL SURFACE RECEPTOR HER2, MLN 19, CD340 ANTIGEN; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERBB2, HER2, NEU, NGL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSMEMBRANE HELIX DIMER, ERBB2, PROTEIN KINASE RECEPTOR MEMBRANE KEYWDS 2 DOMAIN, ATP-BINDING, GLYCOPROTEIN, NUCLEOTIDE-BINDING, KEYWDS 3 PHOSPHORYLATION, POLYMORPHISM, TRANSFERASE, TYROSINE-PROTEIN KINASE EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR K.S.MINEEV,E.V.BOCHAROV,A.S.ARSENIEV REVDAT 4 16-MAR-22 2JWA 1 REMARK REVDAT 3 24-FEB-09 2JWA 1 VERSN REVDAT 2 01-APR-08 2JWA 1 JRNL REVDAT 1 22-JAN-08 2JWA 0 JRNL AUTH E.V.BOCHAROV,K.S.MINEEV,P.E.VOLYNSKY,Y.S.ERMOLYUK,E.N.TKACH, JRNL AUTH 2 A.G.SOBOL,V.V.CHUPIN,M.P.KIRPICHNIKOV,R.G.EFREMOV, JRNL AUTH 3 A.S.ARSENIEV JRNL TITL SPATIAL STRUCTURE OF THE DIMERIC TRANSMEMBRANE DOMAIN OF THE JRNL TITL 2 GROWTH FACTOR RECEPTOR ERBB2 PRESUMABLY CORRESPONDING TO THE JRNL TITL 3 RECEPTOR ACTIVE STATE JRNL REF J.BIOL.CHEM. V. 283 6950 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18178548 JRNL DOI 10.1074/JBC.M709202200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, GROMACS 3.2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), LINDAHL REMARK 3 E, HESS D, VAN DER SPOEL B. (GROMACS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 100 STRUCTURES WAS ANNEALED, 12 REMARK 3 STRUCTURES WERE DEPOSITED. REMARK 4 REMARK 4 2JWA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000100370. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.0MM [U-15N] ERBB2, 64MM [U-2H] REMARK 210 DHPC, 16MM [U-2H] DMPC, 95% H2O/ REMARK 210 5% D2O; 2.0MM [U-13C; U-15N] REMARK 210 ERBB2, 64MM [U-2H] DHPC, 16MM [U- REMARK 210 2H] DMPC, 95% H2O/5% D2O; 1.0MM REMARK 210 [U-13C; U-15N] ERBB2, 64MM [U-2H] REMARK 210 DHPC, 16MM [U-2H] DMPC, 1.0MM REMARK 210 ERBB2, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-15N TOCSY; REMARK 210 3D 1H-13C NOESY; 3D HCCH-TOCSY; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNHA; REMARK 210 3D HNHB; 3D-C13-CHIRP-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 46 161.10 63.29 REMARK 500 1 ALA A 48 34.53 -176.11 REMARK 500 1 GLN A 79 -175.66 54.20 REMARK 500 1 LYS A 81 85.84 60.33 REMARK 500 1 ILE A 82 66.51 -115.75 REMARK 500 1 ARG A 83 78.56 -177.09 REMARK 500 1 GLN B 146 161.17 63.36 REMARK 500 1 ALA B 148 34.91 -176.79 REMARK 500 1 GLN B 179 -175.50 54.03 REMARK 500 1 LYS B 181 86.06 60.40 REMARK 500 1 ILE B 182 66.45 -115.60 REMARK 500 1 ARG B 183 78.58 -176.94 REMARK 500 2 ALA A 44 177.13 59.63 REMARK 500 2 GLU A 45 81.05 -150.08 REMARK 500 2 ALA A 48 101.29 -163.06 REMARK 500 2 GLN A 79 -175.42 54.00 REMARK 500 2 GLN A 80 -68.94 -104.94 REMARK 500 2 ILE A 82 66.42 -115.54 REMARK 500 2 ALA B 144 177.26 59.53 REMARK 500 2 ALA B 148 101.48 -162.81 REMARK 500 2 GLN B 179 -175.47 53.99 REMARK 500 2 GLN B 180 -69.03 -105.67 REMARK 500 2 ILE B 182 66.42 -115.44 REMARK 500 3 ARG A 47 -71.81 -95.99 REMARK 500 3 ALA A 48 56.33 -158.75 REMARK 500 3 ILE A 82 66.41 -115.46 REMARK 500 3 ARG A 83 80.38 52.45 REMARK 500 3 ARG B 147 -71.63 -95.64 REMARK 500 3 ALA B 148 54.33 -158.42 REMARK 500 3 ILE B 182 66.29 -115.35 REMARK 500 3 ARG B 183 80.31 52.56 REMARK 500 4 ILE A 82 66.32 -115.47 REMARK 500 4 ILE B 182 66.22 -115.36 REMARK 500 5 PRO A 43 -179.74 -69.73 REMARK 500 5 ALA A 44 93.97 -68.07 REMARK 500 5 ARG A 47 36.59 -98.68 REMARK 500 5 SER A 49 72.66 63.15 REMARK 500 5 GLN A 80 -64.01 -156.54 REMARK 500 5 ILE A 82 66.38 -115.58 REMARK 500 5 ARG A 83 98.49 60.17 REMARK 500 5 PRO B 143 -179.61 -69.69 REMARK 500 5 ALA B 144 94.04 -67.90 REMARK 500 5 ARG B 147 36.36 -98.51 REMARK 500 5 SER B 149 72.96 63.29 REMARK 500 5 GLN B 180 -64.16 -156.83 REMARK 500 5 ILE B 182 66.39 -115.50 REMARK 500 5 ARG B 183 98.50 60.10 REMARK 500 6 ARG A 47 179.82 58.18 REMARK 500 6 ALA A 48 -175.30 63.65 REMARK 500 6 ILE A 82 66.36 -115.48 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15231 RELATED DB: BMRB DBREF 2JWA A 41 84 UNP P04626 ERBB2_HUMAN 641 684 DBREF 2JWA B 141 184 UNP P04626 ERBB2_HUMAN 641 684 SEQRES 1 A 44 GLY CYS PRO ALA GLU GLN ARG ALA SER PRO LEU THR SER SEQRES 2 A 44 ILE ILE SER ALA VAL VAL GLY ILE LEU LEU VAL VAL VAL SEQRES 3 A 44 LEU GLY VAL VAL PHE GLY ILE LEU ILE LYS ARG ARG GLN SEQRES 4 A 44 GLN LYS ILE ARG LYS SEQRES 1 B 44 GLY CYS PRO ALA GLU GLN ARG ALA SER PRO LEU THR SER SEQRES 2 B 44 ILE ILE SER ALA VAL VAL GLY ILE LEU LEU VAL VAL VAL SEQRES 3 B 44 LEU GLY VAL VAL PHE GLY ILE LEU ILE LYS ARG ARG GLN SEQRES 4 B 44 GLN LYS ILE ARG LYS HELIX 1 1 PRO A 50 GLN A 79 1 30 HELIX 2 2 PRO B 150 GLN B 179 1 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000