PDB Short entry for 2K0J HEADER METAL BINDING PROTEIN 04-FEB-08 2K0J TITLE SOLUTION STRUCTURE OF CAM COMPLEXED TO DRP1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAM; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET16B-CAM KEYWDS CALMODULIN, DRP1 PEPTIDE, ACETYLATION, CALCIUM, METHYLATION, KEYWDS 2 PHOSPHOPROTEIN, UBL CONJUGATION, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 3 PROTEOMICS IN EUROPE, SPINE, METAL BINDING PROTEIN EXPDTA SOLUTION NMR AUTHOR I.BERTINI,C.LUCHINAT,G.PARIGI,J.YUAN,STRUCTURAL PROTEOMICS IN EUROPE AUTHOR 2 (SPINE) REVDAT 3 20-OCT-21 2K0J 1 REMARK SEQADV LINK REVDAT 2 05-MAY-09 2K0J 1 JRNL REVDAT 1 10-MAR-09 2K0J 0 JRNL AUTH I.BERTINI,P.KURSULA,C.LUCHINAT,G.PARIGI,J.VAHOKOSKI, JRNL AUTH 2 M.WILMANNS,J.YUAN JRNL TITL ACCURATE SOLUTION STRUCTURES OF PROTEINS FROM X-RAY DATA AND JRNL TITL 2 A MINIMAL SET OF NMR DATA: CALMODULIN-PEPTIDE COMPLEXES AS JRNL TITL 3 EXAMPLES. JRNL REF J.AM.CHEM.SOC. V. 131 5134 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19317469 JRNL DOI 10.1021/JA8080764 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-08. REMARK 100 THE DEPOSITION ID IS D_1000100522. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 CALMODULIN, 90% H2O/10% D2O; 0.4 REMARK 210 MM [U-100% 15N] CALMODULIN, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D HN(CO)CA; REMARK 210 IPAP; 15N RELAXATION REMARK 210 MEASUREMENT R1; 15N RELAXATION REMARK 210 MEASUREMENT R2 REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA 2.0, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 ALA A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 3 -74.02 -178.70 REMARK 500 LEU A 4 105.95 68.07 REMARK 500 ASP A 20 88.97 -69.53 REMARK 500 LYS A 77 57.73 -145.00 REMARK 500 ASP A 78 -57.69 178.42 REMARK 500 ASP A 80 89.97 70.00 REMARK 500 SER A 81 -54.42 -143.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD1 69.9 REMARK 620 3 ASP A 22 OD2 101.0 46.6 REMARK 620 4 ASP A 24 OD1 68.6 76.6 120.2 REMARK 620 5 THR A 26 O 64.7 131.7 157.6 72.3 REMARK 620 6 GLU A 31 OE2 101.5 132.5 93.5 145.8 73.9 REMARK 620 7 GLU A 31 OE1 67.9 86.6 66.9 136.4 91.2 49.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 LA A 999 LA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD1 97.6 REMARK 620 3 ASP A 60 OD1 70.4 79.0 REMARK 620 4 THR A 62 O 65.0 152.2 74.9 REMARK 620 5 GLU A 67 OE1 72.1 131.9 134.0 65.8 REMARK 620 6 GLU A 67 OE2 90.0 80.1 149.0 119.3 53.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 95 OD1 69.5 REMARK 620 3 ASN A 97 OD1 66.5 72.7 REMARK 620 4 TYR A 99 O 70.5 126.0 58.8 REMARK 620 5 GLU A 104 OE1 78.6 135.3 121.8 66.4 REMARK 620 6 GLU A 104 OE2 60.4 90.1 126.8 100.2 46.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 131 OD2 107.2 REMARK 620 3 ASP A 131 OD1 64.9 46.9 REMARK 620 4 ASP A 133 OD1 74.0 96.5 66.7 REMARK 620 5 GLN A 135 O 65.0 171.7 124.9 79.0 REMARK 620 6 ASN A 137 ND2 160.0 62.9 109.5 122.7 125.4 REMARK 620 7 GLU A 140 OE2 87.4 63.4 81.5 147.6 117.2 72.6 REMARK 620 8 GLU A 140 OE1 88.0 109.5 125.0 152.0 73.9 79.9 48.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA A 999 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7418 RELATED DB: BMRB REMARK 900 RELATED ID: 7417 RELATED DB: BMRB REMARK 900 RELATED ID: 7416 RELATED DB: BMRB REMARK 900 RELATED ID: 15650 RELATED DB: BMRB DBREF 2K0J A 2 148 UNP P62158 CALM_HUMAN 3 149 SEQADV 2K0J ALA A 1 UNP P62158 EXPRESSION TAG SEQADV 2K0J ASP A 60 UNP P62158 ASN 61 ENGINEERED MUTATION SEQRES 1 A 148 ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE LYS SEQRES 2 A 148 GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY THR SEQRES 3 A 148 ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER LEU SEQRES 4 A 148 GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET ILE SEQRES 5 A 148 ASN GLU VAL ASP ALA ASP GLY ASP GLY THR ILE ASP PHE SEQRES 6 A 148 PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS ASP SEQRES 7 A 148 THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG VAL SEQRES 8 A 148 PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA GLU SEQRES 9 A 148 LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU THR SEQRES 10 A 148 ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP ILE SEQRES 11 A 148 ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL GLN SEQRES 12 A 148 MET MET THR ALA LYS HET CA A 501 1 HET CA A 503 1 HET CA A 504 1 HET LA A 999 1 HETNAM CA CALCIUM ION HETNAM LA LANTHANUM (III) ION FORMUL 2 CA 3(CA 2+) FORMUL 5 LA LA 3+ HELIX 1 1 THR A 5 ASP A 20 1 16 HELIX 2 2 THR A 28 LEU A 39 1 12 HELIX 3 3 THR A 44 VAL A 55 1 12 HELIX 4 4 ASP A 64 MET A 76 1 13 HELIX 5 5 GLU A 84 ASP A 93 1 10 HELIX 6 6 SER A 101 GLY A 113 1 13 HELIX 7 7 THR A 117 ASP A 129 1 13 HELIX 8 8 TYR A 138 ALA A 147 1 10 SHEET 1 A 2 TYR A 99 ILE A 100 0 SHEET 2 A 2 VAL A 136 ASN A 137 -1 O VAL A 136 N ILE A 100 LINK OD1 ASP A 20 CA CA A 501 1555 1555 3.01 LINK OD1 ASP A 22 CA CA A 501 1555 1555 2.36 LINK OD2 ASP A 22 CA CA A 501 1555 1555 2.99 LINK OD1 ASP A 24 CA CA A 501 1555 1555 2.30 LINK O THR A 26 CA CA A 501 1555 1555 2.61 LINK OE2 GLU A 31 CA CA A 501 1555 1555 2.30 LINK OE1 GLU A 31 CA CA A 501 1555 1555 2.84 LINK OD1 ASP A 56 LA LA A 999 1555 1555 3.02 LINK OD1 ASP A 58 LA LA A 999 1555 1555 2.68 LINK OD1 ASP A 60 LA LA A 999 1555 1555 1.96 LINK O THR A 62 LA LA A 999 1555 1555 2.67 LINK OE1 GLU A 67 LA LA A 999 1555 1555 2.65 LINK OE2 GLU A 67 LA LA A 999 1555 1555 2.07 LINK OD1 ASP A 93 CA CA A 503 1555 1555 2.75 LINK OD1 ASP A 95 CA CA A 503 1555 1555 2.48 LINK OD1 ASN A 97 CA CA A 503 1555 1555 2.55 LINK O TYR A 99 CA CA A 503 1555 1555 3.01 LINK OE1 GLU A 104 CA CA A 503 1555 1555 2.39 LINK OE2 GLU A 104 CA CA A 503 1555 1555 3.01 LINK OD1 ASP A 129 CA CA A 504 1555 1555 3.01 LINK OD2 ASP A 131 CA CA A 504 1555 1555 2.93 LINK OD1 ASP A 131 CA CA A 504 1555 1555 2.48 LINK OD1 ASP A 133 CA CA A 504 1555 1555 2.54 LINK O GLN A 135 CA CA A 504 1555 1555 2.45 LINK ND2 ASN A 137 CA CA A 504 1555 1555 2.99 LINK OE2 GLU A 140 CA CA A 504 1555 1555 2.71 LINK OE1 GLU A 140 CA CA A 504 1555 1555 2.63 SITE 1 AC1 4 PHE A 19 ASP A 20 ASP A 22 ASP A 24 SITE 1 AC2 5 PHE A 92 ASP A 93 ASP A 95 TYR A 99 SITE 2 AC2 5 ILE A 100 SITE 1 AC3 4 TYR A 99 ALA A 128 ASP A 129 ASP A 131 SITE 1 AC4 3 THR A 26 ASP A 56 ASP A 58 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000