PDB Short entry for 2K2J HEADER HYDROLASE, SIGNALING PROTEIN 02-APR-08 2K2J TITLE NMR SOLUTION STRUCTURE OF THE SPLIT PH DOMAIN FROM PHOSPHOLIPASE C TITLE 2 GAMMA 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE COMPND 3 GAMMA-2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: PH DOMAINS (UNP RESIDUES 471-514 AND 850-913); COMPND 6 SYNONYM: PHOSPHOINOSITIDE PHOSPHOLIPASE C, PLC-GAMMA-2, PHOSPHOLIPASE COMPND 7 C-GAMMA-2, PLC-IV; COMPND 8 EC: 3.1.4.11; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 GENE: PLCG2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PTRIEX4 KEYWDS TWO SHEETED BETA BARREL, C-TERMINAL HELIX, CALCIUM, HYDROLASE, LIPID KEYWDS 2 DEGRADATION, PHOSPHOPROTEIN, POLYMORPHISM, SH2 DOMAIN, SH3 DOMAIN, KEYWDS 3 TRANSDUCER, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,T.D.BUNNEY,M.KATAN,P.C.DRISCOLL REVDAT 4 19-FEB-20 2K2J 1 REMARK SEQADV REVDAT 3 24-FEB-09 2K2J 1 VERSN REVDAT 2 18-NOV-08 2K2J 1 JRNL REVDAT 1 09-SEP-08 2K2J 0 JRNL AUTH C.WALLISER,M.RETLICH,R.HARRIS,K.L.EVERETT,M.B.JOSEPHS, JRNL AUTH 2 P.VATTER,D.ESPOSITO,P.C.DRISCOLL,M.KATAN,P.GIERSCHIK, JRNL AUTH 3 T.D.BUNNEY JRNL TITL RAC REGULATES ITS EFFECTOR PHOSPHOLIPASE C{GAMMA}2 THROUGH JRNL TITL 2 INTERACTION WITH A SPLIT PLECKSTRIN HOMOLOGY DOMAIN. JRNL REF J.BIOL.CHEM. V. 283 30351 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18728011 JRNL DOI 10.1074/JBC.M803316200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: AB INITIO SIMULATED ANNEALING PROTOCOL REMARK 3 WITHIN THE CNS PROGRAM, WITH PARALLHDGV5.3 FORCE FIELD AND REMARK 3 PROLSQ NON-BONDED ENERGY FUNCTION. THIS PROTOCOL ADOPTS A REMARK 3 MIXTURE OF CARTESIAN MOLECULAR DYNAMICS AND TORSION ANGLE REMARK 3 DYNAMICS SIMULATED ANNEALING. REMARK 4 REMARK 4 2K2J COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-08. REMARK 100 THE DEPOSITION ID IS D_1000100594. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 150MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8-1.0 MM [U-15N] SPLIT PH REMARK 210 DOMAIN FROM PHOSPHOLIPASE C REMARK 210 GAMMA 2, 90% H2O, 10% D2O; 0.8- REMARK 210 1.0 MM [U-13C; U-15N] SPLIT PH REMARK 210 DOMAIN FROM PHOSPHOLIPASE C REMARK 210 GAMMA 2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-EDITED_NOESY; 3D_13C REMARK 210 -EDITED_NOESY; 3D_13C-EDITED_ REMARK 210 AROMATIC_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 700 MHZ; 800 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITYPLUS; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 34 118.25 -168.88 REMARK 500 1 ASP A 37 -81.97 65.20 REMARK 500 1 ALA A 38 13.67 -147.33 REMARK 500 1 GLU A 47 -35.14 -158.12 REMARK 500 1 GLN A 48 32.17 -94.50 REMARK 500 1 PRO A 55 -161.98 -66.87 REMARK 500 1 SER A 58 -167.11 50.93 REMARK 500 1 LEU A 59 -67.73 -103.78 REMARK 500 1 THR A 68 57.07 -141.31 REMARK 500 1 GLN A 76 13.63 56.88 REMARK 500 1 ASN A 79 82.25 54.46 REMARK 500 1 GLN A 92 -78.45 -165.08 REMARK 500 1 THR A 118 -62.81 -98.50 REMARK 500 2 LYS A 9 -177.76 59.52 REMARK 500 2 GLU A 11 -63.55 -92.97 REMARK 500 2 LYS A 13 98.08 58.43 REMARK 500 2 GLN A 26 72.74 54.20 REMARK 500 2 ALA A 34 113.82 -168.36 REMARK 500 2 ASP A 37 -84.52 63.68 REMARK 500 2 GLU A 47 -34.42 -153.40 REMARK 500 2 MET A 50 89.79 56.84 REMARK 500 2 ASP A 53 19.52 -140.28 REMARK 500 2 LEU A 59 -72.18 -96.14 REMARK 500 2 CYS A 60 99.74 -61.36 REMARK 500 2 PRO A 75 -70.79 -79.04 REMARK 500 2 ASN A 79 -83.75 -141.50 REMARK 500 2 SER A 82 -54.89 -128.38 REMARK 500 2 GLN A 92 -92.99 43.80 REMARK 500 3 LYS A 9 -173.32 58.36 REMARK 500 3 ALA A 34 116.18 -169.81 REMARK 500 3 THR A 49 111.83 53.51 REMARK 500 3 LEU A 56 103.55 -165.22 REMARK 500 3 LEU A 59 -77.46 -59.50 REMARK 500 3 CYS A 60 102.35 -56.58 REMARK 500 3 LYS A 78 -59.51 -149.89 REMARK 500 3 GLN A 80 14.79 58.64 REMARK 500 3 GLN A 92 152.67 63.24 REMARK 500 3 THR A 118 -61.60 -99.68 REMARK 500 4 LYS A 9 19.37 -164.59 REMARK 500 4 ALA A 34 116.77 -166.79 REMARK 500 4 ASP A 37 -81.75 64.77 REMARK 500 4 ALA A 38 11.16 -151.13 REMARK 500 4 THR A 49 111.39 53.38 REMARK 500 4 ASN A 54 70.21 57.26 REMARK 500 4 LEU A 56 109.85 -166.36 REMARK 500 4 ASP A 65 100.45 -59.54 REMARK 500 4 LEU A 66 26.69 -77.72 REMARK 500 4 THR A 68 58.61 -141.18 REMARK 500 4 ASN A 79 -88.14 65.99 REMARK 500 4 GLN A 80 12.08 -148.49 REMARK 500 REMARK 500 THIS ENTRY HAS 298 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15707 RELATED DB: BMRB DBREF 2K2J A 8 51 UNP P16885 PLCG2_HUMAN 471 514 DBREF 2K2J A 52 124 UNP P16885 PLCG2_HUMAN 841 913 SEQADV 2K2J GLY A 1 UNP P16885 EXPRESSION TAG SEQADV 2K2J GLY A 2 UNP P16885 EXPRESSION TAG SEQADV 2K2J GLY A 3 UNP P16885 EXPRESSION TAG SEQADV 2K2J SER A 4 UNP P16885 EXPRESSION TAG SEQADV 2K2J GLY A 5 UNP P16885 EXPRESSION TAG SEQADV 2K2J GLY A 6 UNP P16885 EXPRESSION TAG SEQADV 2K2J SER A 7 UNP P16885 EXPRESSION TAG SEQADV 2K2J ASP A 94 UNP P16885 TYR 883 VARIANT SEQRES 1 A 124 GLY GLY GLY SER GLY GLY SER LYS LYS ASP GLU HIS LYS SEQRES 2 A 124 GLN GLN GLY GLU LEU TYR MET TRP ASP SER ILE ASP GLN SEQRES 3 A 124 LYS TRP THR ARG HIS TYR CYS ALA ILE ALA ASP ALA LYS SEQRES 4 A 124 LEU SER PHE SER ASP ASP ILE GLU GLN THR MET GLU GLU SEQRES 5 A 124 ASP ASN PRO LEU GLY SER LEU CYS ARG GLY ILE LEU ASP SEQRES 6 A 124 LEU ASN THR TYR ASN VAL VAL LYS ALA PRO GLN GLY LYS SEQRES 7 A 124 ASN GLN LYS SER PHE VAL PHE ILE LEU GLU PRO LYS GLN SEQRES 8 A 124 GLN GLY ASP PRO PRO VAL GLU PHE ALA THR ASP ARG VAL SEQRES 9 A 124 GLU GLU LEU PHE GLU TRP PHE GLN SER ILE ARG GLU ILE SEQRES 10 A 124 THR TRP LYS ILE ASP THR LYS HELIX 1 1 ARG A 103 THR A 118 1 16 SHEET 1 A 7 CYS A 60 LEU A 64 0 SHEET 2 A 7 LYS A 39 SER A 43 -1 N LEU A 40 O LEU A 64 SHEET 3 A 7 LYS A 27 ALA A 36 -1 N ALA A 36 O LYS A 39 SHEET 4 A 7 GLN A 15 ASP A 22 -1 N LEU A 18 O HIS A 31 SHEET 5 A 7 VAL A 97 ALA A 100 -1 O ALA A 100 N TYR A 19 SHEET 6 A 7 VAL A 84 LEU A 87 -1 N LEU A 87 O VAL A 97 SHEET 7 A 7 VAL A 71 ALA A 74 -1 N VAL A 72 O ILE A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000