PDB Short entry for 2K3T HEADER STRUCTURAL PROTEIN 16-MAY-08 2K3T TITLE SOLUTION STRUCTURE OF IG-LIKE DOMAIN 23 FROM HUMAN FILAMIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FILAMIN-A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE DOMAIN 23 OF FILAMIN A (UNP RESIDUES 2427-2522); COMPND 5 SYNONYM: ALPHA-FILAMIN, FILAMIN-1, ENDOTHELIAL ACTIN-BINDING PROTEIN, COMPND 6 ACTIN-BINDING PROTEIN 280, ABP-280, NON-MUSCLE FILAMIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLNA, FLN, FLN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI KEYWDS FILAMIN A, IG-LIKE, IMMUNOGLOBULIN, ACETYLATION, ACTIN-BINDING, KEYWDS 2 CYTOPLASM, CYTOSKELETON, DISEASE MUTATION, PHOSPHOPROTEIN, KEYWDS 3 POLYMORPHISM, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.K.HEIKKINEN,J.YLANNE,I.KILPELAINEN,O.KUPIAINEN REVDAT 3 14-JUN-23 2K3T 1 REMARK REVDAT 2 19-FEB-20 2K3T 1 REMARK SEQADV REVDAT 1 31-MAR-09 2K3T 0 JRNL AUTH F.NAKAMURA,O.HEIKKINEN,O.T.PENTIKAINEN,T.M.OSBORN,K.E.KASZA, JRNL AUTH 2 D.A.WEITZ,O.KUPIAINEN,P.PERMI,I.KILPELAINEN,J.YLANNE, JRNL AUTH 3 J.H.HARTWIG,T.P.STOSSEL JRNL TITL MOLECULAR BASIS OF FILAMIN A-FILGAP INTERACTION AND ITS JRNL TITL 2 IMPAIRMENT IN CONGENITAL DISORDERS ASSOCIATED WITH FILAMIN A JRNL TITL 3 MUTATIONS JRNL REF PLOS ONE V. 4 E4928 2009 JRNL REFN ESSN 1932-6203 JRNL PMID 19293932 JRNL DOI 10.1371/JOURNAL.PONE.0004928 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, AMBER 8.0 REMARK 3 AUTHORS : VARIAN (VNMR), CASE, DARDEN, CHEATHAM, III, REMARK 3 SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BORN IMPLICIT SOLVENT MODEL REMARK 4 REMARK 4 2K3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100640. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] FLNA23, 20 REMARK 210 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 2 MM REMARK 210 SODIUM AZIDE, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCACB; 3D HN(CO)CA; 3D C(CO) REMARK 210 NH; 3D HCCH-COSY; IHNCA; IHNCACB; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, SPARKY 3.110, CYANA REMARK 210 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ILE A 2499 HG SER A 2510 1.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A2484 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A2520 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 7 ARG A2484 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A2484 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A2520 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 15 ARG A2484 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 15 ARG A2484 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 16 ARG A2484 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 18 ARG A2484 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A2504 34.57 -81.45 REMARK 500 2 SER A2463 -109.75 -102.24 REMARK 500 2 VAL A2464 123.57 105.31 REMARK 500 3 ALA A2514 93.19 3.17 REMARK 500 4 SER A2463 -100.90 -103.56 REMARK 500 4 VAL A2464 124.45 97.50 REMARK 500 6 ALA A2514 97.65 -3.97 REMARK 500 6 THR A2517 -169.37 -116.66 REMARK 500 7 SER A2433 -167.91 -127.28 REMARK 500 7 LEU A2521 -55.28 70.24 REMARK 500 8 PRO A2504 34.58 -83.76 REMARK 500 9 ALA A2514 99.45 -7.09 REMARK 500 10 PRO A2504 43.55 -84.02 REMARK 500 11 SER A2433 -169.86 -128.11 REMARK 500 12 PRO A2504 33.88 -84.11 REMARK 500 12 ALA A2514 104.23 -12.78 REMARK 500 13 ALA A2514 114.74 -28.64 REMARK 500 14 SER A2463 68.70 -150.03 REMARK 500 14 ALA A2514 96.99 -2.52 REMARK 500 14 LEU A2521 44.96 -91.28 REMARK 500 15 MET A2490 -3.17 -143.85 REMARK 500 15 PRO A2504 43.97 -82.21 REMARK 500 15 ALA A2514 101.30 -4.00 REMARK 500 16 ALA A2514 108.57 -14.89 REMARK 500 17 PRO A2504 31.77 -82.11 REMARK 500 17 ALA A2514 99.35 -4.78 REMARK 500 18 MET A -1 138.41 79.83 REMARK 500 18 SER A2463 40.29 -140.89 REMARK 500 19 LEU A2521 -40.57 69.96 REMARK 500 20 SER A2463 37.37 -141.06 REMARK 500 20 PRO A2504 33.87 -81.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A2501 0.07 SIDE CHAIN REMARK 500 17 TYR A2501 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15777 RELATED DB: BMRB DBREF 2K3T A 2427 2522 UNP P21333 FLNA_HUMAN 2427 2522 SEQADV 2K3T GLY A -3 UNP P21333 EXPRESSION TAG SEQADV 2K3T ALA A -2 UNP P21333 EXPRESSION TAG SEQADV 2K3T MET A -1 UNP P21333 EXPRESSION TAG SEQRES 1 A 99 GLY ALA MET GLY ASP PRO GLY LEU VAL SER ALA TYR GLY SEQRES 2 A 99 ALA GLY LEU GLU GLY GLY VAL THR GLY ASN PRO ALA GLU SEQRES 3 A 99 PHE VAL VAL ASN THR SER ASN ALA GLY ALA GLY ALA LEU SEQRES 4 A 99 SER VAL THR ILE ASP GLY PRO SER LYS VAL LYS MET ASP SEQRES 5 A 99 CYS GLN GLU CYS PRO GLU GLY TYR ARG VAL THR TYR THR SEQRES 6 A 99 PRO MET ALA PRO GLY SER TYR LEU ILE SER ILE LYS TYR SEQRES 7 A 99 GLY GLY PRO TYR HIS ILE GLY GLY SER PRO PHE LYS ALA SEQRES 8 A 99 LYS VAL THR GLY PRO ARG LEU VAL HELIX 1 1 GLY A 2436 LEU A 2439 5 4 SHEET 1 A 4 SER A2433 TYR A2435 0 SHEET 2 A 4 ALA A2448 ASN A2453 -1 O VAL A2451 N TYR A2435 SHEET 3 A 4 GLY A2482 PRO A2489 -1 O VAL A2485 N PHE A2450 SHEET 4 A 4 VAL A2472 CYS A2479 -1 N ASP A2475 O THR A2486 SHEET 1 B 4 GLY A2441 VAL A2443 0 SHEET 2 B 4 PHE A2512 THR A2517 1 O LYS A2515 N GLY A2442 SHEET 3 B 4 GLY A2493 TYR A2501 -1 N GLY A2493 O VAL A2516 SHEET 4 B 4 LEU A2462 ASP A2467 -1 N ASP A2467 O LEU A2496 CISPEP 1 SER A 2510 PRO A 2511 1 -0.57 CISPEP 2 SER A 2510 PRO A 2511 2 -1.04 CISPEP 3 SER A 2510 PRO A 2511 3 -0.18 CISPEP 4 SER A 2510 PRO A 2511 4 -0.17 CISPEP 5 SER A 2510 PRO A 2511 5 0.73 CISPEP 6 SER A 2510 PRO A 2511 6 -9.56 CISPEP 7 SER A 2510 PRO A 2511 7 0.66 CISPEP 8 SER A 2510 PRO A 2511 8 -0.32 CISPEP 9 SER A 2510 PRO A 2511 9 1.17 CISPEP 10 SER A 2510 PRO A 2511 10 0.67 CISPEP 11 SER A 2510 PRO A 2511 11 -1.11 CISPEP 12 SER A 2510 PRO A 2511 12 0.07 CISPEP 13 SER A 2510 PRO A 2511 13 -1.44 CISPEP 14 SER A 2510 PRO A 2511 14 -1.38 CISPEP 15 SER A 2510 PRO A 2511 15 -0.36 CISPEP 16 SER A 2510 PRO A 2511 16 0.25 CISPEP 17 SER A 2510 PRO A 2511 17 -0.54 CISPEP 18 SER A 2510 PRO A 2511 18 -0.89 CISPEP 19 SER A 2510 PRO A 2511 19 3.21 CISPEP 20 SER A 2510 PRO A 2511 20 -1.67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000