PDB Short entry for 2K5B HEADER CHAPERONE 26-JUN-08 2K5B TITLE HUMAN CDC37-HSP90 DOCKING MODEL BASED ON NMR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT SHOCK PROTEIN HSP 90-ALPHA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 14-223; COMPND 5 SYNONYM: HSP 86, RENAL CARCINOMA ANTIGEN NY-REN-38; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HSP90 CO-CHAPERONE CDC37; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: RESIDUES 148-276; COMPND 11 SYNONYM: HSP90 CHAPERONE PROTEIN KINASE-TARGETING SUBUNIT, P50CDC37; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSP90AA1, HSP90A, HSPC1, HSPCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PKM263; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CDC37, CDC37A; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PKM263 KEYWDS CDC37, HSP90, PROTEIN-PROTEIN INTERACTION, HEAT SHOCK PROTEIN, P50, KEYWDS 2 ALTERNATIVE SPLICING, ATP-BINDING, CHAPERONE, CYTOPLASM, NUCLEOTIDE- KEYWDS 3 BINDING, PHOSPHOPROTEIN, STRESS RESPONSE, POLYMORPHISM EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.SREERAMULU,H.R.A.JONKER,C.R.LANCASTER,C.RICHTER,T.LANGER,H.SCHWALBE REVDAT 3 16-MAR-22 2K5B 1 REMARK REVDAT 2 17-MAR-09 2K5B 1 JRNL REVDAT 1 09-DEC-08 2K5B 0 JRNL AUTH S.SREERAMULU,H.R.A.JONKER,T.LANGER,C.RICHTER,C.R.LANCASTER, JRNL AUTH 2 H.SCHWALBE JRNL TITL THE HUMAN CDC37.HSP90 COMPLEX STUDIED BY HETERONUCLEAR NMR JRNL TITL 2 SPECTROSCOPY JRNL REF J.BIOL.CHEM. V. 284 3885 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19073599 JRNL DOI 10.1074/JBC.M806715200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS 1.1, HADDOCK 2.0 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS), DOMINGUEZ, BOELENS REMARK 3 AND BONVIN (HADDOCK) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS CALCULATED USING REMARK 3 HADDOCK DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE REMARK 4 REMARK 4 2K5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1000100694. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM [U-100% 15N] HUMAN HSP90, REMARK 210 0.8MM [U-100% 15N] HUMAN CDC37, REMARK 210 50MM HEPES, 100MM SODIUM REMARK 210 CHLORIDE, 1MM DTT, 90% H2O/10% REMARK 210 D2O; 0.8MM [U-100% 15N, U-100% REMARK 210 2H] HUMAN HSP90, 0.8MM HUMAN REMARK 210 CDC37, 50MM HEPES, 100MM SODIUM REMARK 210 CHLORIDE, 1MM DTT, 90% H2O/10% REMARK 210 D2O; 0.8MM HUMAN HSP90, 0.8MM [U- REMARK 210 100% 15N, U-100% 2H] HUMAN CDC37, REMARK 210 50MM HEPES, 100MM SODIUM REMARK 210 CHLORIDE, 1MM DTT, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 IPAP(1H,15N)HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, SPARKY 3.113, CARA REMARK 210 1.8.3, CNS 1.1, HADDOCK 2.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE BEST HADDOCK REMARK 210 SCORING REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 25 HZ2 LYS A 116 1.54 REMARK 500 OE2 GLU B 198 HG CYS B 203 1.58 REMARK 500 OD2 ASP A 66 HZ3 LYS A 69 1.59 REMARK 500 OE1 GLU A 75 HE2 HIS A 77 1.60 REMARK 500 HG1 THR A 99 OD2 ASP A 102 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 42 -2.39 -56.02 REMARK 500 1 VAL A 136 36.39 -87.70 REMARK 500 1 PHE A 138 -48.93 -158.06 REMARK 500 1 GLU A 146 -43.14 -130.46 REMARK 500 1 ASP A 156 41.20 -85.99 REMARK 500 1 SER A 165 56.93 -110.19 REMARK 500 1 ALA A 166 -141.91 60.16 REMARK 500 1 GLN A 194 64.55 -117.25 REMARK 500 1 SER A 211 47.31 -105.10 REMARK 500 1 GLU B 153 24.14 -77.46 REMARK 500 1 MET B 164 45.57 -97.34 REMARK 500 1 ARG B 166 -25.96 -175.54 REMARK 500 1 LYS B 202 47.17 -98.60 REMARK 500 2 SER A 39 -76.21 -102.18 REMARK 500 2 GLU A 42 -8.82 -58.38 REMARK 500 2 LYS A 74 31.16 -93.11 REMARK 500 2 ASN A 83 94.77 -161.80 REMARK 500 2 THR A 94 20.92 -79.94 REMARK 500 2 ALA A 126 -154.70 -91.88 REMARK 500 2 VAL A 136 45.53 -92.73 REMARK 500 2 GLU A 158 -159.62 -88.87 REMARK 500 2 SER A 165 52.53 -98.95 REMARK 500 2 ALA A 166 -144.78 63.02 REMARK 500 2 GLN A 194 62.04 -116.00 REMARK 500 2 LYS A 208 49.96 -85.79 REMARK 500 2 LYS A 209 -66.25 -158.07 REMARK 500 2 SER A 211 51.36 -114.71 REMARK 500 2 MET B 164 39.99 -90.47 REMARK 500 2 ARG B 166 -21.67 -175.90 REMARK 500 2 TRP B 168 -78.03 -68.40 REMARK 500 2 LYS B 202 54.22 -106.69 REMARK 500 2 CYS B 203 9.45 -68.76 REMARK 500 2 LYS B 227 36.76 70.15 REMARK 500 3 TYR A 38 -164.30 -107.83 REMARK 500 3 SER A 39 -61.38 -100.80 REMARK 500 3 GLU A 42 -9.54 -56.37 REMARK 500 3 ASP A 66 97.35 -173.00 REMARK 500 3 ARG A 87 43.35 70.39 REMARK 500 3 ALA A 126 -165.97 -115.70 REMARK 500 3 VAL A 136 40.75 -94.92 REMARK 500 3 PHE A 138 -15.10 -146.90 REMARK 500 3 ALA A 145 -165.26 -105.94 REMARK 500 3 GLU A 146 -38.38 -148.91 REMARK 500 3 ASP A 156 40.98 -93.90 REMARK 500 3 ALA A 166 -155.01 60.38 REMARK 500 3 GLN A 194 62.03 -112.77 REMARK 500 3 GLU A 196 -32.70 -39.78 REMARK 500 3 SER A 211 46.93 -101.49 REMARK 500 3 PHE A 213 38.05 -88.59 REMARK 500 3 PHE B 151 -48.02 -157.55 REMARK 500 REMARK 500 THIS ENTRY HAS 174 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YES RELATED DB: PDB REMARK 900 HUMAN HSP90 GELDANAMYCIN-BINDING DOMAIN, "OPEN" REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS RESIDUE IS UNP DATABASE P07900 REF.1(CAA33259) DBREF 2K5B A 14 223 UNP P07900 HS90A_HUMAN 14 223 DBREF 2K5B B 148 276 UNP Q16543 CDC37_HUMAN 148 276 SEQADV 2K5B THR A 63 UNP P07900 SER 63 SEE REMARK 999 SEQRES 1 A 210 GLU GLU GLU VAL GLU THR PHE ALA PHE GLN ALA GLU ILE SEQRES 2 A 210 ALA GLN LEU MET SER LEU ILE ILE ASN THR PHE TYR SER SEQRES 3 A 210 ASN LYS GLU ILE PHE LEU ARG GLU LEU ILE SER ASN SER SEQRES 4 A 210 SER ASP ALA LEU ASP LYS ILE ARG TYR GLU THR LEU THR SEQRES 5 A 210 ASP PRO SER LYS LEU ASP SER GLY LYS GLU LEU HIS ILE SEQRES 6 A 210 ASN LEU ILE PRO ASN LYS GLN ASP ARG THR LEU THR ILE SEQRES 7 A 210 VAL ASP THR GLY ILE GLY MET THR LYS ALA ASP LEU ILE SEQRES 8 A 210 ASN ASN LEU GLY THR ILE ALA LYS SER GLY THR LYS ALA SEQRES 9 A 210 PHE MET GLU ALA LEU GLN ALA GLY ALA ASP ILE SER MET SEQRES 10 A 210 ILE GLY GLN PHE GLY VAL GLY PHE TYR SER ALA TYR LEU SEQRES 11 A 210 VAL ALA GLU LYS VAL THR VAL ILE THR LYS HIS ASN ASP SEQRES 12 A 210 ASP GLU GLN TYR ALA TRP GLU SER SER ALA GLY GLY SER SEQRES 13 A 210 PHE THR VAL ARG THR ASP THR GLY GLU PRO MET GLY ARG SEQRES 14 A 210 GLY THR LYS VAL ILE LEU HIS LEU LYS GLU ASP GLN THR SEQRES 15 A 210 GLU TYR LEU GLU GLU ARG ARG ILE LYS GLU ILE VAL LYS SEQRES 16 A 210 LYS HIS SER GLN PHE ILE GLY TYR PRO ILE THR LEU PHE SEQRES 17 A 210 VAL GLU SEQRES 1 B 129 HIS LYS THR PHE VAL GLU LYS TYR GLU LYS GLN ILE LYS SEQRES 2 B 129 HIS PHE GLY MET LEU ARG ARG TRP ASP ASP SER GLN LYS SEQRES 3 B 129 TYR LEU SER ASP ASN VAL HIS LEU VAL CYS GLU GLU THR SEQRES 4 B 129 ALA ASN TYR LEU VAL ILE TRP CYS ILE ASP LEU GLU VAL SEQRES 5 B 129 GLU GLU LYS CYS ALA LEU MET GLU GLN VAL ALA HIS GLN SEQRES 6 B 129 THR ILE VAL MET GLN PHE ILE LEU GLU LEU ALA LYS SER SEQRES 7 B 129 LEU LYS VAL ASP PRO ARG ALA CYS PHE ARG GLN PHE PHE SEQRES 8 B 129 THR LYS ILE LYS THR ALA ASP ARG GLN TYR MET GLU GLY SEQRES 9 B 129 PHE ASN ASP GLU LEU GLU ALA PHE LYS GLU ARG VAL ARG SEQRES 10 B 129 GLY ARG ALA LYS LEU ARG ILE GLU LYS ALA MET LYS HELIX 1 1 GLN A 23 THR A 36 1 14 HELIX 2 2 GLU A 42 ASP A 66 1 25 HELIX 3 3 PRO A 67 ASP A 71 5 5 HELIX 4 4 THR A 99 LEU A 107 1 9 HELIX 5 5 LYS A 112 GLY A 125 1 14 HELIX 6 6 ASP A 127 ILE A 131 5 5 HELIX 7 7 PHE A 138 LEU A 143 5 6 HELIX 8 8 THR A 195 LEU A 198 5 4 HELIX 9 9 GLU A 199 SER A 211 1 13 HELIX 10 10 HIS B 148 GLY B 163 1 16 HELIX 11 11 ARG B 167 ASN B 178 1 12 HELIX 12 12 VAL B 179 VAL B 182 5 4 HELIX 13 13 CYS B 183 GLU B 200 1 18 HELIX 14 14 LYS B 202 LYS B 227 1 26 HELIX 15 15 ASP B 229 CYS B 233 5 5 HELIX 16 16 ARG B 235 LYS B 240 1 6 HELIX 17 17 ASP B 245 LYS B 276 1 32 SHEET 1 A 8 GLU A 18 ALA A 21 0 SHEET 2 A 8 SER A 169 THR A 174 -1 O VAL A 172 N GLU A 18 SHEET 3 A 8 GLN A 159 SER A 164 -1 N GLU A 163 O THR A 171 SHEET 4 A 8 ALA A 145 LYS A 153 -1 N VAL A 150 O TRP A 162 SHEET 5 A 8 GLY A 183 LEU A 190 -1 O LYS A 185 N ILE A 151 SHEET 6 A 8 THR A 88 ASP A 93 -1 N ILE A 91 O VAL A 186 SHEET 7 A 8 ILE A 78 ASN A 83 -1 N ASN A 79 O VAL A 92 SHEET 8 A 8 ILE A 218 LEU A 220 1 O THR A 219 N LEU A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000