PDB Short entry for 2K5G HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-JUN-08 2K5G TITLE SOLUTION NMR STRUCTURE OF PROTEIN ENCODED BY GENE BPP1335 FROM TITLE 2 BORDETELLA PARAPERTUSSIS: NORTHEAST STRUCTURAL GENOMICS TARGET BPR195 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA PARAPERTUSSIS; SOURCE 3 ORGANISM_TAXID: 519; SOURCE 4 GENE: BPP1335; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21-23C KEYWDS STRUCTURAL GENOMICCS, PROTEIN STRUCTURE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SINGARAPU,A.ELETSKY,B.SATHYAMOORTHY,D.SUKUMARAN,D.WANG,M.JIANG, AUTHOR 2 C.CICCOSANTI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 4 14-JUN-23 2K5G 1 REMARK REVDAT 3 19-FEB-20 2K5G 1 REMARK SEQADV REVDAT 2 24-FEB-09 2K5G 1 VERSN REVDAT 1 02-SEP-08 2K5G 0 JRNL AUTH K.SINGARAPU,A.ELETSKY,B.SATHYAMOORTHY,D.SUKUMARAN,D.WANG, JRNL AUTH 2 M.JIANG,C.CICCOSANTI,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA, JRNL AUTH 3 T.B.ACTON,B.ROST,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF PROTEIN ENCODED BY GENE BPP1335 JRNL TITL 2 FROM BORDETELLA PARAPERTUSSIS: NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 TARGET BPR195 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOASSIGN, CNS REMARK 3 AUTHORS : ZIMMERMAN, MOSELEY, KULIKOWSKI AND MONTELIONE REMARK 3 (AUTOASSIGN), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K5G COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-08. REMARK 100 THE DEPOSITION ID IS D_1000100699. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.069 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 95% H2O/5% D2O; REMARK 210 1.1 MM U-100%N, 5%C ENTITY, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 4,3D REMARK 210 GFT HCCH COSY; 3D 15N-13C REMARK 210 SIMULTANIOUS NOESY; 3D HNCO; 3D REMARK 210 HCCH-TOCSY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, CYANA, MOLMOL, REMARK 210 NMRPIPE, PSVS, TALOS, VNMRJ, REMARK 210 XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA SER A 20 HD13 LEU A 136 1.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 -64.02 -106.47 REMARK 500 1 LEU A 16 -156.13 60.44 REMARK 500 1 ILE A 31 -41.99 178.00 REMARK 500 1 LEU A 48 -85.31 -154.50 REMARK 500 1 PRO A 54 -164.25 -76.56 REMARK 500 1 ASN A 66 -165.62 -71.79 REMARK 500 1 HIS A 67 105.70 -53.61 REMARK 500 1 LEU A 70 -73.55 -154.52 REMARK 500 1 ALA A 72 -66.24 -136.44 REMARK 500 1 GLU A 73 -54.79 70.16 REMARK 500 1 PRO A 76 5.72 -67.35 REMARK 500 1 TYR A 79 -72.72 -115.80 REMARK 500 1 ALA A 80 -66.99 65.86 REMARK 500 1 LEU A 93 -70.36 -88.79 REMARK 500 1 ARG A 99 -71.24 -158.51 REMARK 500 1 GLU A 111 -168.60 68.98 REMARK 500 1 GLU A 125 -26.30 -179.21 REMARK 500 1 ASP A 138 -167.32 -178.15 REMARK 500 1 ARG A 182 -73.61 -64.39 REMARK 500 1 HIS A 186 74.73 -108.76 REMARK 500 2 PRO A 4 -157.87 -76.53 REMARK 500 2 SER A 5 39.88 -150.68 REMARK 500 2 ASP A 10 -159.38 -147.09 REMARK 500 2 ALA A 14 75.76 -164.06 REMARK 500 2 ARG A 15 90.70 55.93 REMARK 500 2 ILE A 31 -32.50 174.36 REMARK 500 2 LEU A 48 -72.98 -142.11 REMARK 500 2 PRO A 54 -164.50 -75.93 REMARK 500 2 LEU A 70 80.99 65.68 REMARK 500 2 THR A 71 -166.13 66.32 REMARK 500 2 ALA A 77 -73.30 -172.31 REMARK 500 2 ARG A 99 -72.48 -161.41 REMARK 500 2 GLU A 111 -170.57 61.88 REMARK 500 2 GLN A 163 -169.30 -105.76 REMARK 500 2 PRO A 167 109.88 -51.16 REMARK 500 2 GLN A 181 -81.39 -88.97 REMARK 500 2 ARG A 182 86.07 46.39 REMARK 500 3 ALA A 14 -88.56 -82.12 REMARK 500 3 GLN A 19 -1.37 73.47 REMARK 500 3 ILE A 31 -41.22 173.69 REMARK 500 3 ALA A 49 139.66 80.09 REMARK 500 3 ASN A 66 -179.15 -175.93 REMARK 500 3 ALA A 68 -41.29 74.27 REMARK 500 3 LEU A 70 -157.03 -116.20 REMARK 500 3 ALA A 72 91.56 69.45 REMARK 500 3 PRO A 85 97.97 -61.51 REMARK 500 3 LEU A 93 -65.90 -97.20 REMARK 500 3 ARG A 99 -73.94 -159.95 REMARK 500 3 ALA A 109 13.92 -155.24 REMARK 500 3 GLN A 181 -80.40 -85.28 REMARK 500 REMARK 500 THIS ENTRY HAS 330 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BPR195 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15835 RELATED DB: BMRB DBREF 2K5G A 1 183 UNP Q7WAN9 Q7WAN9_BORPA 1 183 SEQADV 2K5G LEU A 184 UNP Q7WAN9 EXPRESSION TAG SEQADV 2K5G GLU A 185 UNP Q7WAN9 EXPRESSION TAG SEQADV 2K5G HIS A 186 UNP Q7WAN9 EXPRESSION TAG SEQADV 2K5G HIS A 187 UNP Q7WAN9 EXPRESSION TAG SEQADV 2K5G HIS A 188 UNP Q7WAN9 EXPRESSION TAG SEQADV 2K5G HIS A 189 UNP Q7WAN9 EXPRESSION TAG SEQADV 2K5G HIS A 190 UNP Q7WAN9 EXPRESSION TAG SEQADV 2K5G HIS A 191 UNP Q7WAN9 EXPRESSION TAG SEQRES 1 A 191 MET THR SER PRO SER SER ALA PHE PRO ASP GLY HIS GLY SEQRES 2 A 191 ALA ARG LEU ASP ALA GLN SER ILE ARG PHE GLU ARG LEU SEQRES 3 A 191 LEU PRO GLY PRO ILE GLU ARG VAL TRP ALA TRP LEU ALA SEQRES 4 A 191 ASP ALA ASP LYS ARG ALA ARG TRP LEU ALA GLY GLY GLU SEQRES 5 A 191 LEU PRO ARG GLN PRO GLY GLN THR PHE GLU LEU HIS PHE SEQRES 6 A 191 ASN HIS ALA ALA LEU THR ALA GLU THR ALA PRO ALA ARG SEQRES 7 A 191 TYR ALA GLN TYR ASP ARG PRO ILE VAL ALA ARG HIS THR SEQRES 8 A 191 LEU LEU ARG CYS GLU PRO PRO ARG VAL LEU ALA LEU THR SEQRES 9 A 191 TRP GLY GLY GLY ALA GLY GLU ALA PRO SER GLU VAL LEU SEQRES 10 A 191 PHE GLU LEU SER GLU ALA GLY GLU GLN VAL ARG LEU VAL SEQRES 11 A 191 LEU THR HIS THR ARG LEU ALA ASP ARG ALA ALA MET LEU SEQRES 12 A 191 ASP VAL ALA GLY GLY TRP HIS ALA HIS LEU ALA VAL LEU SEQRES 13 A 191 ALA GLY LYS LEU ALA GLY GLN ALA PRO PRO PRO PHE TRP SEQRES 14 A 191 THR THR LEU ALA GLN ALA GLU GLN ASP TYR GLU GLN ARG SEQRES 15 A 191 LEU LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ILE A 31 ASP A 40 1 10 HELIX 2 2 ASP A 40 ALA A 45 1 6 HELIX 3 3 ASN A 66 LEU A 70 5 5 HELIX 4 4 ALA A 80 ARG A 84 5 5 HELIX 5 5 ASP A 138 ALA A 146 1 9 HELIX 6 6 ALA A 151 GLY A 162 1 12 HELIX 7 7 PRO A 167 LEU A 183 1 17 SHEET 1 A 6 ILE A 21 LEU A 27 0 SHEET 2 A 6 VAL A 127 THR A 134 -1 O LEU A 131 N PHE A 23 SHEET 3 A 6 GLU A 115 GLU A 122 -1 N SER A 121 O ARG A 128 SHEET 4 A 6 VAL A 100 THR A 104 -1 N LEU A 103 O VAL A 116 SHEET 5 A 6 ILE A 86 GLU A 96 -1 N ARG A 94 O ALA A 102 SHEET 6 A 6 THR A 60 PHE A 65 -1 N PHE A 65 O ILE A 86 CISPEP 1 PRO A 97 PRO A 98 1 -9.53 CISPEP 2 PRO A 97 PRO A 98 2 -6.96 CISPEP 3 PRO A 97 PRO A 98 3 -7.92 CISPEP 4 PRO A 97 PRO A 98 4 -8.12 CISPEP 5 PRO A 97 PRO A 98 5 -6.55 CISPEP 6 PRO A 97 PRO A 98 6 -8.48 CISPEP 7 PRO A 97 PRO A 98 7 -9.02 CISPEP 8 PRO A 97 PRO A 98 8 -5.95 CISPEP 9 PRO A 97 PRO A 98 9 -5.70 CISPEP 10 PRO A 97 PRO A 98 10 -11.10 CISPEP 11 PRO A 97 PRO A 98 11 -7.37 CISPEP 12 PRO A 97 PRO A 98 12 -8.05 CISPEP 13 PRO A 97 PRO A 98 13 -8.07 CISPEP 14 PRO A 97 PRO A 98 14 -9.16 CISPEP 15 PRO A 97 PRO A 98 15 -7.57 CISPEP 16 PRO A 97 PRO A 98 16 -9.70 CISPEP 17 PRO A 97 PRO A 98 17 -5.55 CISPEP 18 PRO A 97 PRO A 98 18 -7.22 CISPEP 19 PRO A 97 PRO A 98 19 -4.49 CISPEP 20 PRO A 97 PRO A 98 20 -5.52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000