PDB Short entry for 2K6M
HEADER    STRUCTURAL PROTEIN                      11-JUL-08   2K6M              
TITLE     SOLUTION STRUCTURE OF HUMAN SUPERVILLIN HEADPIECE                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: SUPERVILLIN;                                               
COMPND   3 CHAIN: S;                                                            
COMPND   4 FRAGMENT: UNP RESIDUES 2149-2214, HP;                                
COMPND   5 SYNONYM: ARCHVILLIN, P205/P250;                                      
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: SVIL;                                                          
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);                                 
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PSVHP(PET24A)                              
KEYWDS    SUPERVILLIN, SVHP, HP, HEADPIECE, VILLIN, ARCHVILLIN, ACTIN CAPPING,  
KEYWDS   2 ACTIN-BINDING, ALTERNATIVE SPLICING, CALCIUM, CYTOPLASM,             
KEYWDS   3 CYTOSKELETON, MEMBRANE, PHOSPHOPROTEIN, POLYMORPHISM, STRUCTURAL     
KEYWDS   4 PROTEIN                                                              
EXPDTA    SOLUTION NMR                                                          
NUMMDL    22                                                                    
AUTHOR    J.W.BROWN,V.DIDEM,C.MCKNIGHT                                          
REVDAT   3   16-MAR-22 2K6M    1       REMARK SEQADV                            
REVDAT   2   27-OCT-09 2K6M    1       JRNL                                     
REVDAT   1   14-JUL-09 2K6M    0                                                
JRNL        AUTH   J.W.BROWN,D.VARDAR-ULU,C.J.MCKNIGHT                          
JRNL        TITL   HOW TO ARM A SUPERVILLIN: DESIGNING F-ACTIN BINDING ACTIVITY 
JRNL        TITL 2 INTO SUPERVILLIN HEADPIECE.                                  
JRNL        REF    J.MOL.BIOL.                   V. 393   608 2009              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   19683541                                                     
JRNL        DOI    10.1016/J.JMB.2009.08.018                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER                                              
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2K6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-08.                  
REMARK 100 THE DEPOSITION ID IS D_1000100741.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 293                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : NULL                               
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.3-2.5 MM [U-13C SUPERVILLIN      
REMARK 210                                   HEADPIECE, 4 MM DTT, 100 MM        
REMARK 210                                   SODIUM CHLORIDE, 500 UM TMSP, 20   
REMARK 210                                   MM SODIUM PHOSPHATE, 95% H2O/5%    
REMARK 210                                   D2O; 1.3-2.5 MM [U-15N]            
REMARK 210                                   SUPERVILLIN HEADPIECE, 20 MM       
REMARK 210                                   SODIUM PHOSPHATE, 500 UM TMSP, 4   
REMARK 210                                   MM DTT, 100 MM SODIUM CHLORIDE,    
REMARK 210                                   95% H2O/5% D2O; 1.3-2.5 MM [U-     
REMARK 210                                   10% 13C] SUPERVILLIN HEADPIECE,    
REMARK 210                                   4 MM DTT, 500 UM TMSP, 100 MM      
REMARK 210                                   SODIUM CHLORIDE, 20 MM SODIUM      
REMARK 210                                   PHOSPHATE, 95% H2O/5% D2O; 1.3-    
REMARK 210                                   2.5 MM SUPERVILLIN HEADPIECE, 4    
REMARK 210                                   MM DTT, 500 UM TMSP, 100 MM        
REMARK 210                                   SODIUM CHLORIDE, 20 MM SODIUM      
REMARK 210                                   PHOSPHATE, 95% H2O/5% D2O; 1.3-    
REMARK 210                                   2.5 MM [U-13C] SUPERVILLIN         
REMARK 210                                   HEADPIECE, 4 MM DTT, 100 MM        
REMARK 210                                   SODIUM CHLORIDE, 20 MM SODIUM      
REMARK 210                                   PHOSPHATE, 500 UM TMSP, 95% H2O/   
REMARK 210                                   5% D2O                             
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC;    
REMARK 210                                   2D 1H-1H TOCSY; 2D 1H-1H COSY;     
REMARK 210                                   3D HNCA; 3D HNCO; 3D HN(C 3D       
REMARK 210                                   HCCH-TOCSY; 3D HCCH-COSY; 3D       
REMARK 210                                   HNHA; 3D HNHB; 3D HN(CA)CO; 2D     
REMARK 210                                   1H-1H NOESY; 3D 1H-15N NOESY 3D    
REMARK 210                                   1H-13C NOESY; 3D HMQC-J            
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ                            
REMARK 210  SPECTROMETER MODEL             : DMX                                
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : CNS 1.1, NMRPIPE, MOLMOL 2K.2      
REMARK 210                                   2K.2, XWINNMR 3.1, TALOS,          
REMARK 210                                   PREDITOR, NMRVIEW 7.0.16           
REMARK 210   METHOD USED                   : DGSA-DISTANCE GEOMETRY SIMULATED   
REMARK 210                                   ANNEALING                          
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 22                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: DISTANCE RESTRAINTS WERE DETERMINED FROM A NOESY BUILDUP     
REMARK 210  SERIES. MIXING TIMES OF 50, 75, 100, 125 AND 150 US. EXTRA          
REMARK 210  RESTRAINTS FROM 13C AND 15N-EDITTED NOESY BINED AS WEAK             
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: S                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    THR S    43     H    PHE S    47              1.52            
REMARK 500   O    TRP S    64     H    ASN S    68              1.52            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ALA S  26       49.22     96.77                                   
REMARK 500  1 PRO S  28       80.90    -30.68                                   
REMARK 500  1 PRO S  30     -159.53    -80.24                                   
REMARK 500  1 ASP S  44      -34.11    -34.67                                   
REMARK 500  1 LEU S  75      -82.05    -62.85                                   
REMARK 500  2 PRO S  20       98.16    -49.89                                   
REMARK 500  2 LEU S  21      -37.48    -35.99                                   
REMARK 500  2 ALA S  26       40.14    165.87                                   
REMARK 500  2 PRO S  28       67.26    -34.15                                   
REMARK 500  2 PRO S  30     -164.78    -60.67                                   
REMARK 500  2 THR S  43     -169.73    -72.22                                   
REMARK 500  2 MET S  53     -159.15   -123.67                                   
REMARK 500  2 LEU S  75      -83.36    -57.58                                   
REMARK 500  3 ALA S  26       43.05    176.83                                   
REMARK 500  3 PRO S  28       82.78    -48.88                                   
REMARK 500  3 PRO S  30     -162.05    -65.33                                   
REMARK 500  3 LYS S  37       84.79   -158.39                                   
REMARK 500  3 THR S  43     -174.03    -59.88                                   
REMARK 500  3 MET S  53     -167.01   -128.29                                   
REMARK 500  3 LEU S  75      -84.25    -65.45                                   
REMARK 500  4 ALA S  26       37.72    173.25                                   
REMARK 500  4 PRO S  28       75.58    -49.77                                   
REMARK 500  4 PRO S  30     -162.94    -66.28                                   
REMARK 500  4 LYS S  37       96.07   -160.48                                   
REMARK 500  4 GLU S  39      -29.12    -37.12                                   
REMARK 500  4 THR S  43     -170.18    -59.76                                   
REMARK 500  4 MET S  53     -162.67   -122.25                                   
REMARK 500  4 PRO S  62      158.18    -49.48                                   
REMARK 500  4 LEU S  75      -85.53    -51.61                                   
REMARK 500  5 PRO S  20      105.81    -51.21                                   
REMARK 500  5 ALA S  26       19.93    176.42                                   
REMARK 500  5 PRO S  28       76.20    -50.86                                   
REMARK 500  5 PRO S  30     -161.12    -63.44                                   
REMARK 500  5 GLU S  39      -19.90    -49.73                                   
REMARK 500  5 THR S  43     -176.96    -67.10                                   
REMARK 500  5 MET S  53     -159.05   -124.56                                   
REMARK 500  5 LEU S  75      -79.43   -108.40                                   
REMARK 500  6 PRO S  20      100.72    -49.19                                   
REMARK 500  6 LEU S  21      -33.93    -39.02                                   
REMARK 500  6 ALA S  26       48.81    163.38                                   
REMARK 500  6 PRO S  28       71.30    -43.56                                   
REMARK 500  6 PRO S  30     -164.25    -54.97                                   
REMARK 500  6 LYS S  37       93.49   -172.55                                   
REMARK 500  6 GLU S  39      -27.85    -39.22                                   
REMARK 500  6 THR S  43     -166.99    -60.04                                   
REMARK 500  6 ALA S  50      -61.42   -100.32                                   
REMARK 500  6 MET S  53     -160.35   -120.65                                   
REMARK 500  6 LEU S  75      -86.75    -58.27                                   
REMARK 500  7 PRO S  20      107.24    -53.47                                   
REMARK 500  7 ALA S  26       40.76    172.01                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     190 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2K6N   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF HUMAN SUPERVILLIN HEADPIECE, MINIMIZED AVERAGE 
REMARK 900 RELATED ID: 1YU5   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN          
REMARK 900 RELATED ID: 1QZP   RELATED DB: PDB                                   
REMARK 900 NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE DOMAIN                  
REMARK 900 RELATED ID: 1ZV6   RELATED DB: PDB                                   
REMARK 900 NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE S74E MUTANT             
REMARK 900 RELATED ID: 1QQV   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN         
REMARK 900 RELATED ID: 1YU7   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE W64A MUTANT OF VILLIN HEADPIECE             
REMARK 900 RELATED ID: 1UNC   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE HUMAN VILLIN C-TERMINAL HEADPIECE          
REMARK 900 SUBDOMAIN                                                            
REMARK 900 RELATED ID: 1UND   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE HUMAN ADVILLIN C-TERMINAL SUBDOMAIN        
REMARK 900 RELATED ID: 1YU8   RELATED DB: PDB                                   
REMARK 900 CRYSTAL STRUCTURE OF THE R37A MUTANT OF VILLIN HEADPIECE             
REMARK 900 RELATED ID: 1VII   RELATED DB: PDB                                   
REMARK 900 THERMOSTABLE SUBDOMAIN FROM CHICKEN VILLIN HEADPIECE, NMR,           
REMARK 900 MINIMIZED AVERAGE STRUCTURE                                          
REMARK 900 RELATED ID: 2PPZ   RELATED DB: PDB                                   
REMARK 900 NMR SOLUTION STRUCTURE OF THE VILLIN HEADPIECE MUTANT G34L           
REMARK 900 RELATED ID: 1UJS   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE VILLIN HEADPIECE DOMAIN OF HUMAN ACTIN-    
REMARK 900 BINDING LIM PROTEIN HOMOLOG                                          
REMARK 900 RELATED ID: 1YRF   RELATED DB: PDB                                   
REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, N68H, PH 6.7                         
REMARK 900 RELATED ID: 1YRI   RELATED DB: PDB                                   
REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, N68H, PH 6.4                         
REMARK 900 RELATED ID: 2JM0   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF CHICKEN VILLIN HEADPIECE SUBDOMAIN CONTAINING  
REMARK 900 A FLUORINATED SIDECHAIN IN THE CORE                                  
REMARK 900 RELATED ID: 1WY3   RELATED DB: PDB                                   
REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, K65(NLE), N68H, PH 7.0               
REMARK 900 RELATED ID: 1WY4   RELATED DB: PDB                                   
REMARK 900 CHICKEN VILLIN SUBDOMAIN HP-35, K65(NLE), N68H, PH 5.1               
DBREF  2K6M S   11    76  UNP    O95425   SVIL_HUMAN    2149   2214             
SEQADV 2K6M MET S   10  UNP  O95425              EXPRESSION TAG                 
SEQRES   1 S   67  MET LEU ALA LYS LEU CYS LYS THR ILE TYR PRO LEU ALA          
SEQRES   2 S   67  ASP LEU LEU ALA ARG PRO LEU PRO GLU GLY VAL ASP PRO          
SEQRES   3 S   67  LEU LYS LEU GLU ILE TYR LEU THR ASP GLU ASP PHE GLU          
SEQRES   4 S   67  PHE ALA LEU ASP MET THR ARG ASP GLU TYR ASN ALA LEU          
SEQRES   5 S   67  PRO ALA TRP LYS GLN VAL ASN LEU LYS LYS ALA LYS GLY          
SEQRES   6 S   67  LEU PHE                                                      
HELIX    1   1 PRO S   20  LEU S   25  1                                   6    
HELIX    2   2 LEU S   38  LEU S   42  5                                   5    
HELIX    3   3 THR S   43  LEU S   51  1                                   9    
HELIX    4   4 THR S   54  ASN S   59  1                                   6    
HELIX    5   5 PRO S   62  GLY S   74  1                                  13    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000