PDB Short entry for 2K9G HEADER SIGNALING PROTEIN 10-OCT-08 2K9G TITLE SOLUTION STRUCTURE OF THE THIRD SH3 DOMAIN OF THE CIN85 ADAPTER TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 DOMAIN-CONTAINING KINASE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN C, UNP RESIDUES 262-333; COMPND 5 SYNONYM: CBL-INTERACTING PROTEIN OF 85 KDA, HUMAN SRC FAMILY KINASE- COMPND 6 BINDING PROTEIN 1, HSB-1, CD2-BINDING PROTEIN 3, CD2BP3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CIN85, SH3KBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: BL21(DE3)STAR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PLEICS-01 KEYWDS CIN85, SH3, ADAPTOR PROTEIN, DOWNREGULATION, CBL, APOPTOSIS, CELL KEYWDS 2 JUNCTION, CYTOPLASMIC VESICLE, CYTOSKELETON, ENDOCYTOSIS, MEMBRANE, KEYWDS 3 PHOSPHOPROTEIN, SH3 DOMAIN, SH3-BINDING, SYNAPSE, SYNAPTOSOME, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.L.PHILIPPE,J.E.LADBURY,M.PFUHL REVDAT 2 02-FEB-11 2K9G 1 ATOM REVDAT 1 13-OCT-09 2K9G 0 JRNL AUTH D.L.PHILIPPE JRNL TITL SOLUTION STRUCTURE OF THE SH3-C DOMAIN OF CIN85 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER, WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2K9G COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB100843. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 140 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM CIN85 SH3-C, 20MM SODIUM REMARK 210 PHOSPHATE, 100MM SODIUM CHLORIDE, REMARK 210 1MM DTT, 1MM EDTA, 0.02% SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 1MM [U- REMARK 210 98% 13C; U-98% 15N] CIN85 SH3-C, REMARK 210 20MM SODIUM PHOSPHATE, 100MM REMARK 210 SODIUM CHLORIDE, 1MM DTT, 1MM REMARK 210 EDTA, 0.02% SODIUM AZIDE, 100% REMARK 210 D2O; 1MM [U-99% 15N] CIN85 SH3-C, REMARK 210 20MM SODIUM PHOSPHATE, 100MM REMARK 210 SODIUM CHLORIDE, 1MM DTT, 1MM REMARK 210 EDTA, 0.02% SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O; 1MM [U-99% 13C; U- REMARK 210 99% 15N] CIN85 SH3-C, 20MM SODIUM REMARK 210 PHOSPHATE, 100MM SODIUM CHLORIDE, REMARK 210 1MM DTT, 1MM EDTA, 0.02% SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HCACO; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D C(CO)NH; 3D REMARK 210 HBHANH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 2D 1H-13C TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3 TO 2.1, ANALYSIS REMARK 210 1.0.15, TALOS, CYANA, PSVS, WHATIF REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LYS A 273 O LYS A 324 1.80 REMARK 500 H ASN A 298 O GLU A 308 1.80 REMARK 500 H ALA A 280 OG1 THR A 287 1.80 REMARK 500 O TYR A 278 H ILE A 288 1.81 REMARK 500 O VAL A 274 H GLY A 291 1.86 REMARK 500 O GLY A 305 H ASP A 320 1.86 REMARK 500 H CYS A 272 O VAL A 294 1.88 REMARK 500 H LEU A 286 O VAL A 317 1.89 REMARK 500 H VAL A 274 O ASP A 292 1.89 REMARK 500 O CYS A 272 H VAL A 294 1.90 REMARK 500 O ASN A 282 H GLU A 285 1.91 REMARK 500 O PRO A 319 H PHE A 322 1.92 REMARK 500 H GLN A 281 OE1 GLU A 285 1.94 REMARK 500 O THR A 295 H GLU A 310 1.94 REMARK 500 H TRP A 307 O PHE A 318 1.94 REMARK 500 O GLY A 309 H GLY A 316 1.97 REMARK 500 H LEU A 311 O ARG A 314 1.97 REMARK 500 O LEU A 311 H ARG A 314 1.99 REMARK 500 H THR A 295 O GLU A 310 2.00 REMARK 500 O LYS A 273 H LYS A 324 2.00 REMARK 500 O TYR A 271 H LEU A 326 2.00 REMARK 500 O TRP A 307 H PHE A 318 2.00 REMARK 500 O LYS A 289 H ASP A 292 2.01 REMARK 500 H TYR A 278 O ILE A 288 2.01 REMARK 500 H ILE A 297 O GLU A 308 2.01 REMARK 500 O ASN A 298 H GLU A 308 2.05 REMARK 500 H GLY A 309 O GLY A 316 2.12 REMARK 500 O LYS A 267 H LYS A 269 2.14 REMARK 500 O ASP A 270 H LEU A 296 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 278 110.39 -176.10 REMARK 500 2 ASP A 263 -65.16 -105.49 REMARK 500 2 TYR A 278 107.42 -173.95 REMARK 500 2 ASP A 300 162.31 -49.92 REMARK 500 2 LYS A 332 -66.14 -95.23 REMARK 500 3 ASP A 263 135.44 -170.21 REMARK 500 3 SER A 268 29.67 -141.13 REMARK 500 3 LYS A 269 176.29 -56.52 REMARK 500 3 TYR A 278 107.96 -173.68 REMARK 500 3 ASP A 300 165.79 -49.74 REMARK 500 4 SER A 264 57.43 -99.67 REMARK 500 4 TYR A 278 109.78 -173.29 REMARK 500 5 SER A 268 109.20 -163.75 REMARK 500 5 TYR A 278 112.22 -170.80 REMARK 500 5 ASP A 300 162.01 -49.77 REMARK 500 6 TYR A 278 107.32 -174.43 REMARK 500 6 ASP A 300 160.15 -49.60 REMARK 500 7 TYR A 278 108.32 -173.43 REMARK 500 7 ASN A 282 -178.47 -175.54 REMARK 500 7 ASP A 300 165.25 -49.94 REMARK 500 8 SER A 268 55.45 -95.61 REMARK 500 8 TYR A 278 113.51 -174.38 REMARK 500 8 ASP A 300 179.78 -56.04 REMARK 500 8 CYS A 301 -69.53 -129.05 REMARK 500 9 MET A 262 41.71 39.44 REMARK 500 9 TYR A 278 106.02 -172.81 REMARK 500 9 ASP A 300 161.77 -49.90 REMARK 500 10 LYS A 267 178.20 -56.65 REMARK 500 10 TYR A 278 108.63 -174.59 REMARK 500 11 ASP A 263 63.52 -116.95 REMARK 500 11 TYR A 278 106.06 -171.17 REMARK 500 11 ASP A 300 160.49 -49.98 REMARK 500 11 LYS A 332 -74.39 -91.70 REMARK 500 12 LYS A 269 176.85 -58.13 REMARK 500 12 TYR A 278 111.74 -172.92 REMARK 500 12 ASP A 300 179.76 -56.00 REMARK 500 12 CYS A 301 -69.41 -128.99 REMARK 500 13 SER A 268 49.83 -90.62 REMARK 500 13 TYR A 278 111.47 -166.41 REMARK 500 13 ASP A 300 160.78 -49.68 REMARK 500 13 LYS A 332 -74.00 -70.87 REMARK 500 14 THR A 266 -72.99 -96.23 REMARK 500 14 TYR A 278 109.64 -174.16 REMARK 500 14 ASP A 300 178.61 -55.49 REMARK 500 14 CYS A 301 -69.36 -128.04 REMARK 500 14 LYS A 332 -74.47 -86.48 REMARK 500 15 ARG A 265 105.33 -55.84 REMARK 500 15 SER A 268 28.18 -144.88 REMARK 500 15 TYR A 278 105.96 -174.38 REMARK 500 15 LYS A 332 -73.73 -60.92 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15984 RELATED DB: BMRB DBREF 2K9G A 262 333 UNP Q96B97 SH3K1_HUMAN 262 333 SEQADV 2K9G SER A 261 UNP Q96B97 EXPRESSION TAG SEQRES 1 A 73 SER MET ASP SER ARG THR LYS SER LYS ASP TYR CYS LYS SEQRES 2 A 73 VAL ILE PHE PRO TYR GLU ALA GLN ASN ASP ASP GLU LEU SEQRES 3 A 73 THR ILE LYS GLU GLY ASP ILE VAL THR LEU ILE ASN LYS SEQRES 4 A 73 ASP CYS ILE ASP VAL GLY TRP TRP GLU GLY GLU LEU ASN SEQRES 5 A 73 GLY ARG ARG GLY VAL PHE PRO ASP ASN PHE VAL LYS LEU SEQRES 6 A 73 LEU PRO PRO ASP PHE GLU LYS GLU SHEET 1 A 5 ARG A 314 PRO A 319 0 SHEET 2 A 5 TRP A 306 LEU A 311 -1 N TRP A 307 O PHE A 318 SHEET 3 A 5 ILE A 293 ASN A 298 -1 N ASN A 298 O GLU A 308 SHEET 4 A 5 ASP A 270 VAL A 274 -1 N CYS A 272 O VAL A 294 SHEET 5 A 5 VAL A 323 LEU A 325 -1 O LYS A 324 N LYS A 273 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000