PDB Short entry for 2KBS HEADER STRUCTURAL PROTEIN/CELL ADHESION 05-DEC-08 2KBS TITLE SOLUTION STRUCTURE OF HARMONIN PDZ2 IN COMPLEX WITH THE CARBOXYL TAIL TITLE 2 PEPTIDE OF CADHERIN23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HARMONIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ2 DOMAIN, UNP RESIDUES 208-299; COMPND 5 SYNONYM: USHER SYNDROME TYPE-1C PROTEIN, AUTOIMMUNE ENTEROPATHY- COMPND 6 RELATED ANTIGEN AIE-75, ANTIGEN NY-CO-38/NY-CO-37, PDZ-73 PROTEIN, COMPND 7 RENAL CARCINOMA ANTIGEN NY-REN-3; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: OCTAMERIC PEPTIDE FROM CADHERIN-23; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: CARBOXYL TAIL, UNP RESIDUES 3347-3354; COMPND 13 SYNONYM: OTOCADHERIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HARMONIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET32A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CADHERIN23; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 20 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS PROTEIN COMPLEX, ALTERNATIVE SPLICING, COILED COIL, DEAFNESS, KEYWDS 2 HEARING, NON-SYNDROMIC DEAFNESS, POLYMORPHISM, RETINITIS PIGMENTOSA, KEYWDS 3 SENSORY TRANSDUCTION, USHER SYNDROME, VISION, CALCIUM, CELL KEYWDS 4 ADHESION, CELL MEMBRANE, DISEASE MUTATION, GLYCOPROTEIN, MEMBRANE, KEYWDS 5 PHOSPHOPROTEIN, TRANSMEMBRANE, STRUCTURAL PROTEIN-CELL ADHESION KEYWDS 6 COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.PAN,J.YAN,L.WU,M.ZHANG REVDAT 3 16-MAR-22 2KBS 1 REMARK REVDAT 2 21-APR-09 2KBS 1 JRNL REVDAT 1 31-MAR-09 2KBS 0 JRNL AUTH L.PAN,J.YAN,L.WU,M.ZHANG JRNL TITL ASSEMBLING STABLE HAIR CELL TIP LINK COMPLEX VIA JRNL TITL 2 MULTIDENTATE INTERACTIONS BETWEEN HARMONIN AND CADHERIN 23 JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 5575 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19297620 JRNL DOI 10.1073/PNAS.0901819106 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG, REMARK 3 KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KBS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100924. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100MM POTASSIUM PHOSPHATE-1, 1MM REMARK 210 DTT-2, 1MM EDTA-3, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 20 43.15 -143.81 REMARK 500 1 PRO A 31 -160.51 -69.55 REMARK 500 1 LYS A 34 70.48 -151.08 REMARK 500 1 SER A 40 -169.68 -106.10 REMARK 500 1 GLU A 54 171.24 179.49 REMARK 500 1 GLU A 61 147.78 -172.37 REMARK 500 1 ALA A 92 -17.49 83.12 REMARK 500 1 MET A 99 72.51 -69.34 REMARK 500 2 GLU A 10 116.53 61.67 REMARK 500 2 LEU A 17 52.50 -90.57 REMARK 500 2 LEU A 23 -66.75 -125.06 REMARK 500 2 PRO A 31 -168.14 -71.21 REMARK 500 2 LYS A 34 76.78 -154.51 REMARK 500 2 SER A 40 -168.98 -106.22 REMARK 500 2 ALA A 92 -19.48 82.75 REMARK 500 3 GLU A 10 124.55 63.45 REMARK 500 3 LEU A 17 -70.58 -54.72 REMARK 500 3 VAL A 18 89.59 40.98 REMARK 500 3 LEU A 23 -56.91 -140.79 REMARK 500 3 PRO A 31 -165.71 -67.65 REMARK 500 3 LYS A 34 59.31 -171.01 REMARK 500 3 SER A 40 -169.35 -106.05 REMARK 500 3 ALA A 92 -19.42 85.54 REMARK 500 3 PRO B 112 -179.48 -65.64 REMARK 500 4 LEU A 17 46.78 -94.51 REMARK 500 4 SER A 20 30.99 -149.53 REMARK 500 4 LEU A 23 -64.49 -148.13 REMARK 500 4 PRO A 31 -167.66 -71.06 REMARK 500 4 GLU A 54 166.27 178.00 REMARK 500 4 GLU A 61 149.89 -177.15 REMARK 500 4 ALA A 92 -22.45 85.68 REMARK 500 4 PRO B 112 -167.97 -75.25 REMARK 500 5 SER A 20 32.03 -145.32 REMARK 500 5 LEU A 23 -56.29 -133.20 REMARK 500 5 PRO A 31 -166.44 -71.37 REMARK 500 5 LYS A 34 65.63 -157.25 REMARK 500 5 SER A 40 -169.45 -106.29 REMARK 500 5 HIS A 41 150.22 -46.23 REMARK 500 5 SER A 46 -166.40 -103.87 REMARK 500 5 ALA A 92 -17.32 83.26 REMARK 500 6 PRO A 31 -159.61 -70.78 REMARK 500 6 LYS A 34 65.43 -175.98 REMARK 500 6 SER A 40 -169.44 -106.06 REMARK 500 6 GLU A 61 146.15 -176.99 REMARK 500 6 ASN A 69 31.44 -144.57 REMARK 500 6 ALA A 92 -17.52 82.06 REMARK 500 7 LEU A 17 -169.08 -59.79 REMARK 500 7 VAL A 18 136.16 64.60 REMARK 500 7 SER A 20 -66.41 -157.73 REMARK 500 7 LEU A 23 -43.56 -141.06 REMARK 500 REMARK 500 THIS ENTRY HAS 140 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KBQ RELATED DB: PDB REMARK 900 HARMONIN N TERMINAL DOMAIN REMARK 900 RELATED ID: 2KBR RELATED DB: PDB REMARK 900 HARMONIN N TERMINAL DOMAIN IN COMPLEX WITH A INTERNAL PEPTIDE OF REMARK 900 CADHERIN23 DBREF 2KBS A 9 100 UNP Q9Y6N9 USH1C_HUMAN 208 299 DBREF 2KBS B 111 118 UNP Q9H251 CAD23_HUMAN 3347 3354 SEQRES 1 A 92 LYS GLU LYS LYS VAL PHE ILE SER LEU VAL GLY SER ARG SEQRES 2 A 92 GLY LEU GLY CYS SER ILE SER SER GLY PRO ILE GLN LYS SEQRES 3 A 92 PRO GLY ILE PHE ILE SER HIS VAL LYS PRO GLY SER LEU SEQRES 4 A 92 SER ALA GLU VAL GLY LEU GLU ILE GLY ASP GLN ILE VAL SEQRES 5 A 92 GLU VAL ASN GLY VAL ASP PHE SER ASN LEU ASP HIS LYS SEQRES 6 A 92 GLU ALA VAL ASN VAL LEU LYS SER SER ARG SER LEU THR SEQRES 7 A 92 ILE SER ILE VAL ALA ALA ALA GLY ARG GLU LEU PHE MET SEQRES 8 A 92 THR SEQRES 1 B 8 THR PRO LEU GLU ILE THR GLU LEU HELIX 1 1 SER A 46 GLY A 52 1 7 HELIX 2 2 ASP A 71 SER A 82 1 12 HELIX 3 3 GLY A 94 MET A 99 1 6 SHEET 1 A 4 GLU A 10 ILE A 15 0 SHEET 2 A 4 LEU A 85 VAL A 90 -1 O ILE A 87 N VAL A 13 SHEET 3 A 4 GLN A 58 VAL A 62 -1 N VAL A 60 O SER A 88 SHEET 4 A 4 VAL A 65 ASP A 66 -1 O VAL A 65 N VAL A 62 SHEET 1 B 6 GLU A 10 ILE A 15 0 SHEET 2 B 6 LEU A 85 VAL A 90 -1 O ILE A 87 N VAL A 13 SHEET 3 B 6 GLN A 58 VAL A 62 -1 N VAL A 60 O SER A 88 SHEET 4 B 6 ILE A 37 VAL A 42 -1 N ILE A 37 O ILE A 59 SHEET 5 B 6 CYS A 25 SER A 29 -1 N SER A 28 O PHE A 38 SHEET 6 B 6 ILE B 115 GLU B 117 -1 O THR B 116 N ILE A 27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000