PDB Short entry for 2KBY HEADER TRANSCRIPTION 12-DEC-08 2KBY TITLE THE TETRAMERIZATION DOMAIN OF HUMAN P73 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR PROTEIN P73; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: TETRAMERIZATION DOMAIN, UNP RESIDUES 351-398; COMPND 5 SYNONYM: P53-LIKE TRANSCRIPTION FACTOR, P53-RELATED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P73, TP73; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBH4 KEYWDS TETRAMERIZATION DOMAIN, ACTIVATOR, ALTERNATIVE SPLICING, ANTI- KEYWDS 2 ONCOGENE, APOPTOSIS, CELL CYCLE, DNA-BINDING, METAL-BINDING, KEYWDS 3 NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 4 UBL CONJUGATION, ZINC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.COUTANDIN,T.IKEYA,F.LOEHR,P.GUNTERT,H.D.OU,V.DOETSCH REVDAT 3 16-MAR-22 2KBY 1 REMARK SEQADV REVDAT 2 01-DEC-09 2KBY 1 JRNL SEQADV REVDAT 1 29-SEP-09 2KBY 0 JRNL AUTH D.COUTANDIN,F.LOHR,F.H.NIESEN,T.IKEYA,T.A.WEBER,B.SCHAFER, JRNL AUTH 2 E.M.ZIELONKA,A.N.BULLOCK,A.YANG,P.GUNTERT,S.KNAPP,F.MCKEON, JRNL AUTH 3 H.D.OU,V.DOTSCH JRNL TITL CONFORMATIONAL STABILITY AND ACTIVITY OF P73 REQUIRE A JRNL TITL 2 SECOND HELIX IN THE TETRAMERIZATION DOMAIN. JRNL REF CELL DEATH DIFFER. V. 16 1582 2009 JRNL REFN ISSN 1350-9047 JRNL PMID 19763140 JRNL DOI 10.1038/CDD.2009.139 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.2, ARIA 2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE, NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE, NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-08. REMARK 100 THE DEPOSITION ID IS D_1000100930. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303; 303 REMARK 210 PH : 7.0; NULL; 6.8 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL REMARK 210 PRESSURE : 1 ATM; 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 2.5MM [U-13C; U-15N] P73 TD-1, REMARK 210 20MM SODIUM PHOSPHATE-2, 100MM REMARK 210 SODIUM CHLORIDE-3, 100% D2O; REMARK 210 2.5MM [U-13C; U-15N] P73 TD-4, REMARK 210 20MM SODIUM PHOSPHATE-5, 100MM REMARK 210 SODIUM CHLORIDE-6, 95% H2O/5% REMARK 210 D2O; 2.5MM [U-15N] P73 TD-7, REMARK 210 20MM SODIUM PHOSPHATE-8, 100MM REMARK 210 SODIUM CHLORIDE-9, 95% H2O/5% REMARK 210 D2O; 2.5MM [U-15N] P73 TD-10, REMARK 210 2.5MM [U-13C] P73 TD-11, 20MM REMARK 210 SODIUM PHOSPHATE-12, 100MM REMARK 210 SODIUM CHLORIDE-13, 95% H2O/5% REMARK 210 D2O; 2.5MM [U-15N] P73 TD-14, REMARK 210 2.5MM [U-13C] P73 TD-15, 20MM REMARK 210 SODIUM PHOSPHATE-16, 100MM REMARK 210 SODIUM CHLORIDE-17, 100% D2O; REMARK 210 2.5MM [U-10% 13C] P73 TD-18, REMARK 210 20MM SODIUM PHOSPHATE-19, 100MM REMARK 210 SODIUM CHLORIDE-20, 95% H2O/5% REMARK 210 D2O; 2.5MM [U-13C; U-15N] P73 TD- REMARK 210 21, 16.4 HZ PF1 PHAGE-22, 50MM REMARK 210 ARGININE-23, 50MM GLUTAMATE-24, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D NOESY REMARK 210 -[15N,1H]-TROSY; 3D NOESY-[13C, REMARK 210 1H]-HSQC; 4D-CT-J-RESOLVED 13C- REMARK 210 SEPARATED NOESY; 3D 15N-EDITED/ REMARK 210 13C-SEPARATED NOESY; 3D 15N/13C- REMARK 210 SEPARATED NOESY; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HNCO; 3D H(CCO)NH; REMARK 210 3D C(CO)NH; TOCSY-[15N,1H]-TROSY; REMARK 210 CT-[13C,1H]-HSQC; C-COUPLED REMARK 210 HA(CACO)NH; F2-IPAP-CT-[13C,1H]- REMARK 210 HSQC; [15N,1H]-TROSY/ANTI-TROSY; REMARK 210 HN-TROSY IPAP; C-COUPLED HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.2 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF NOE REMARK 210 AND RESIDUAL DIPOLAR COUPLING DATA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 9.00 -168.77 REMARK 500 1 ASP A 3 -143.44 -77.88 REMARK 500 1 GLU B 2 8.90 -168.74 REMARK 500 1 ASP B 3 -143.38 -77.87 REMARK 500 1 GLU C 2 8.96 -168.81 REMARK 500 1 ASP C 3 -143.52 -77.83 REMARK 500 1 GLU D 2 8.79 -168.77 REMARK 500 1 ASP D 3 -143.54 -77.74 REMARK 500 2 GLU A 2 -150.41 -169.71 REMARK 500 2 ASP A 3 -157.23 70.45 REMARK 500 2 GLN A 47 37.88 -85.07 REMARK 500 2 GLU B 2 -150.49 -169.74 REMARK 500 2 ASP B 3 -157.16 70.56 REMARK 500 2 GLN B 47 38.01 -85.09 REMARK 500 2 GLU C 2 -150.51 -169.78 REMARK 500 2 ASP C 3 -157.20 70.48 REMARK 500 2 GLN C 47 37.97 -85.13 REMARK 500 2 GLU D 2 -150.48 -169.80 REMARK 500 2 ASP D 3 -157.24 70.49 REMARK 500 2 GLN D 47 37.95 -85.08 REMARK 500 3 GLU A 2 11.79 -168.34 REMARK 500 3 ASP A 3 -144.34 -79.43 REMARK 500 3 LEU A 46 -71.37 -115.04 REMARK 500 3 GLU B 2 11.68 -168.38 REMARK 500 3 ASP B 3 -144.38 -79.31 REMARK 500 3 LEU B 46 -71.37 -115.06 REMARK 500 3 GLU C 2 11.75 -168.37 REMARK 500 3 ASP C 3 -144.31 -79.39 REMARK 500 3 LEU C 46 -71.34 -115.06 REMARK 500 3 GLU D 2 11.69 -168.31 REMARK 500 3 ASP D 3 -144.28 -79.33 REMARK 500 3 LEU D 46 -71.37 -115.00 REMARK 500 4 GLU A 2 21.53 -163.11 REMARK 500 4 ASP A 3 -145.12 -80.33 REMARK 500 4 LEU A 46 -67.86 -107.08 REMARK 500 4 GLU B 2 21.51 -163.04 REMARK 500 4 ASP B 3 -145.17 -80.24 REMARK 500 4 LEU B 46 -67.83 -107.20 REMARK 500 4 GLU C 2 21.48 -163.09 REMARK 500 4 ASP C 3 -145.17 -80.24 REMARK 500 4 LEU C 46 -67.93 -107.09 REMARK 500 4 GLU D 2 21.48 -163.06 REMARK 500 4 ASP D 3 -145.18 -80.28 REMARK 500 4 LEU D 46 -67.84 -107.14 REMARK 500 5 GLU A 2 2.57 -167.54 REMARK 500 5 ASP A 3 -139.91 -73.16 REMARK 500 5 LEU A 46 -72.39 -109.42 REMARK 500 5 GLU B 2 2.63 -167.53 REMARK 500 5 ASP B 3 -139.94 -73.25 REMARK 500 5 LEU B 46 -72.48 -109.40 REMARK 500 REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KBY A 1 48 UNP O15350 P73_HUMAN 351 398 DBREF 2KBY B 1 48 UNP O15350 P73_HUMAN 351 398 DBREF 2KBY C 1 48 UNP O15350 P73_HUMAN 351 398 DBREF 2KBY D 1 48 UNP O15350 P73_HUMAN 351 398 SEQADV 2KBY GLY A -1 UNP O15350 EXPRESSION TAG SEQADV 2KBY SER A 0 UNP O15350 EXPRESSION TAG SEQADV 2KBY GLY B -1 UNP O15350 EXPRESSION TAG SEQADV 2KBY SER B 0 UNP O15350 EXPRESSION TAG SEQADV 2KBY GLY C -1 UNP O15350 EXPRESSION TAG SEQADV 2KBY SER C 0 UNP O15350 EXPRESSION TAG SEQADV 2KBY GLY D -1 UNP O15350 EXPRESSION TAG SEQADV 2KBY SER D 0 UNP O15350 EXPRESSION TAG SEQRES 1 A 50 GLY SER ASP GLU ASP THR TYR TYR LEU GLN VAL ARG GLY SEQRES 2 A 50 ARG GLU ASN PHE GLU ILE LEU MET LYS LEU LYS GLU SER SEQRES 3 A 50 LEU GLU LEU MET GLU LEU VAL PRO GLN PRO LEU VAL ASP SEQRES 4 A 50 SER TYR ARG GLN GLN GLN GLN LEU LEU GLN ARG SEQRES 1 B 50 GLY SER ASP GLU ASP THR TYR TYR LEU GLN VAL ARG GLY SEQRES 2 B 50 ARG GLU ASN PHE GLU ILE LEU MET LYS LEU LYS GLU SER SEQRES 3 B 50 LEU GLU LEU MET GLU LEU VAL PRO GLN PRO LEU VAL ASP SEQRES 4 B 50 SER TYR ARG GLN GLN GLN GLN LEU LEU GLN ARG SEQRES 1 C 50 GLY SER ASP GLU ASP THR TYR TYR LEU GLN VAL ARG GLY SEQRES 2 C 50 ARG GLU ASN PHE GLU ILE LEU MET LYS LEU LYS GLU SER SEQRES 3 C 50 LEU GLU LEU MET GLU LEU VAL PRO GLN PRO LEU VAL ASP SEQRES 4 C 50 SER TYR ARG GLN GLN GLN GLN LEU LEU GLN ARG SEQRES 1 D 50 GLY SER ASP GLU ASP THR TYR TYR LEU GLN VAL ARG GLY SEQRES 2 D 50 ARG GLU ASN PHE GLU ILE LEU MET LYS LEU LYS GLU SER SEQRES 3 D 50 LEU GLU LEU MET GLU LEU VAL PRO GLN PRO LEU VAL ASP SEQRES 4 D 50 SER TYR ARG GLN GLN GLN GLN LEU LEU GLN ARG HELIX 1 1 GLY A 11 MET A 28 1 18 HELIX 2 2 PRO A 32 LEU A 45 1 14 HELIX 3 3 GLY B 11 MET B 28 1 18 HELIX 4 4 PRO B 32 LEU B 45 1 14 HELIX 5 5 GLY C 11 MET C 28 1 18 HELIX 6 6 PRO C 32 LEU C 45 1 14 HELIX 7 7 GLY D 11 MET D 28 1 18 HELIX 8 8 PRO D 32 LEU D 45 1 14 SHEET 1 A 2 THR A 4 ARG A 10 0 SHEET 2 A 2 THR B 4 ARG B 10 -1 O VAL B 9 N TYR A 5 SHEET 1 B 2 THR C 4 ARG C 10 0 SHEET 2 B 2 THR D 4 ARG D 10 -1 O TYR D 5 N VAL C 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000