PDB Short entry for 2KFG
HEADER    PROTEIN BINDING                         20-FEB-09   2KFG              
TITLE     STRUCTURE OF THE C-TERMINAL DOMAIN OF EHD1 IN COMPLEX WITH            
TITLE    2 FNYESTDPFTAK                                                         
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: EH DOMAIN-CONTAINING PROTEIN 1;                            
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: EH-DOMAIN, RESIDUES 435-534;                               
COMPND   5 SYNONYM: TESTILIN, HPAST1;                                           
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: RAB11-FIP2 DPF PEPTIDE FNYESTDPFTAK;                       
COMPND   9 CHAIN: B;                                                            
COMPND  10 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: EHD1, PAST, PAST1, CDABP0131;                                  
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_VECTOR: PGEX6P-2;                                  
SOURCE   9 MOL_ID: 2;                                                           
SOURCE  10 SYNTHETIC: YES;                                                      
SOURCE  11 OTHER_DETAILS: THE PEPTIDE HAS BEEN SYNTHESIZED CHEMICALLY           
KEYWDS    EHD1, CALCIUM, CELL MEMBRANE, COILED COIL, ENDOSOME, MEMBRANE,        
KEYWDS   2 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTEIN BINDING                  
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    F.KIEKEN,M.JOVIC,M.TONELLI,N.NASLAVSKY,S.CAPLAN,P.SORGEN              
REVDAT   2   19-FEB-20 2KFG    1       SEQADV                                   
REVDAT   1   22-DEC-09 2KFG    0                                                
JRNL        AUTH   F.KIEKEN,M.JOVIC,M.TONELLI,N.NASLAVSKY,S.CAPLAN,P.L.SORGEN   
JRNL        TITL   STRUCTURAL INSIGHT INTO THE INTERACTION OF PROTEINS          
JRNL        TITL 2 CONTAINING NPF, DPF, AND GPF MOTIFS WITH THE C-TERMINAL      
JRNL        TITL 3 EH-DOMAIN OF EHD1.                                           
JRNL        REF    PROTEIN SCI.                  V.  18  2471 2009              
JRNL        REFN                   ISSN 0961-8368                               
JRNL        PMID   19798736                                                     
JRNL        DOI    10.1002/PRO.258                                              
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : NMRVIEW                                              
REMARK   3   AUTHORS     : JOHNSON, ONE MOON SCIENTIFIC                         
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2KFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000101055.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 0.1                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.6 MM [U-99% 13C; U-99% 15N] EH   
REMARK 210                                   DOMAIN OF EHD1, 3 MM RAB11-FIP2    
REMARK 210                                   DPF PEPTIDE, 90% H2O/10% D2O       
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D 1H-15N HSQC; 2D 1H-13C HSQC;    
REMARK 210                                   3D HNCACB; 3D 1H-15N NOESY; 3D     
REMARK 210                                   1H-13C NOESY; 2D 13CFILTERED-      
REMARK 210                                   13CFILTEREDNOESY; 2D 13C-          
REMARK 210                                   FILTERED-13C EDITEDNOESY; 2D 13C-  
REMARK 210                                   FILTERED-15N EDITEDNOESY; 2D 15N   
REMARK 210                                   FILTERED NOESY                     
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ; 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : VXRS; INOVA                        
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE, PROCHECKNMR, VNMR         
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 30                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HZ1  LYS A    91     OE1  GLU B   146              1.58            
REMARK 500   OD2  ASP A    49     HH   TYR A    53              1.59            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500  5 TYR A  53   CZ    TYR A  53   CE2    -0.079                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 LEU A  37      110.47     72.04                                   
REMARK 500  1 SER A  39      -26.79   -148.49                                   
REMARK 500  1 SER A  61       87.06     69.14                                   
REMARK 500  1 PRO A 133        2.21    -65.66                                   
REMARK 500  1 TYR B 145     -164.76     43.41                                   
REMARK 500  1 GLU B 146       20.73   -155.89                                   
REMARK 500  1 THR B 148       13.00   -140.38                                   
REMARK 500  1 PRO B 150        0.15    -68.71                                   
REMARK 500  2 SER A  61       78.40     61.19                                   
REMARK 500  2 ASN A  64       25.37     48.39                                   
REMARK 500  2 ASN B 144      -74.22    -56.27                                   
REMARK 500  2 GLU B 146       75.45   -101.75                                   
REMARK 500  2 ALA B 153      -36.11     76.30                                   
REMARK 500  3 LEU A  37       81.60     63.96                                   
REMARK 500  3 ASP A  49       36.26   -143.44                                   
REMARK 500  3 SER A  61       86.84     66.34                                   
REMARK 500  4 SER A  61       90.82     74.85                                   
REMARK 500  4 ASN A  64       26.95     48.48                                   
REMARK 500  5 LEU A  37      119.83     72.19                                   
REMARK 500  5 SER A  61       80.98     67.08                                   
REMARK 500  5 HIS A 120     -168.99   -121.83                                   
REMARK 500  5 TYR B 145     -169.07     46.16                                   
REMARK 500  6 SER A  61       85.07     69.45                                   
REMARK 500  6 PRO B 150        0.49    -69.57                                   
REMARK 500  7 LEU A  37       39.62    -93.42                                   
REMARK 500  7 SER A  61       88.15     69.65                                   
REMARK 500  7 PRO A 133        2.90    -64.05                                   
REMARK 500  7 GLU B 146       75.84   -110.49                                   
REMARK 500  8 LEU A  37      -77.68     65.23                                   
REMARK 500  8 SER A  61       80.77     66.35                                   
REMARK 500  8 PRO A 133        3.09    -63.41                                   
REMARK 500  8 ASN B 144     -168.64     69.39                                   
REMARK 500  8 THR B 152       21.75    -79.79                                   
REMARK 500  9 PRO A  36     -162.24    -79.68                                   
REMARK 500  9 SER A  61       87.37     66.72                                   
REMARK 500  9 ASN B 144     -154.79   -106.48                                   
REMARK 500  9 PRO B 150        0.22    -63.24                                   
REMARK 500 10 SER A  39      -69.97     71.65                                   
REMARK 500 10 SER A  61       88.12     64.92                                   
REMARK 500 10 GLU B 146     -152.98     50.01                                   
REMARK 500 10 THR B 148       -3.85   -140.35                                   
REMARK 500 10 ALA B 153     -163.40     64.47                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A 141  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 LEU A 100   O                                                      
REMARK 620 2 GLU A 105   OE2 131.3                                              
REMARK 620 3 GLU A 105   OE1  80.9  68.3                                        
REMARK 620 N                    1     2                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 141                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 16180   RELATED DB: BMRB                                 
REMARK 900 RELATED ID: 2KFF   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF THE C-TERMINAL DOMAIN OF EHD1 WITH FNYESTNPFTAK         
REMARK 900 RELATED ID: 2KFH   RELATED DB: PDB                                   
REMARK 900 STRUCTURE OF THE C-TERMINAL DOMAIN OF EHD1 WITH FNYESTGPFTAK         
DBREF  2KFG A   40   139  UNP    Q9H4M9   EHD1_HUMAN     435    534             
DBREF  2KFG B  143   154  PDB    2KFG     2KFG           143    154             
SEQADV 2KFG GLY A   35  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KFG PRO A   36  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KFG LEU A   37  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KFG GLY A   38  UNP  Q9H4M9              EXPRESSION TAG                 
SEQADV 2KFG SER A   39  UNP  Q9H4M9              EXPRESSION TAG                 
SEQRES   1 A  105  GLY PRO LEU GLY SER ASP ASP VAL GLU TRP VAL VAL GLY          
SEQRES   2 A  105  LYS ASP LYS PRO THR TYR ASP GLU ILE PHE TYR THR LEU          
SEQRES   3 A  105  SER PRO VAL ASN GLY LYS ILE THR GLY ALA ASN ALA LYS          
SEQRES   4 A  105  LYS GLU MET VAL LYS SER LYS LEU PRO ASN THR VAL LEU          
SEQRES   5 A  105  GLY LYS ILE TRP LYS LEU ALA ASP VAL ASP LYS ASP GLY          
SEQRES   6 A  105  LEU LEU ASP ASP GLU GLU PHE ALA LEU ALA ASN HIS LEU          
SEQRES   7 A  105  ILE LYS VAL LYS LEU GLU GLY HIS GLU LEU PRO ALA ASP          
SEQRES   8 A  105  LEU PRO PRO HIS LEU VAL PRO PRO SER LYS ARG ARG HIS          
SEQRES   9 A  105  GLU                                                          
SEQRES   1 B   12  PHE ASN TYR GLU SER THR ASP PRO PHE THR ALA LYS              
HET     CA  A 141       1                                                       
HETNAM      CA CALCIUM ION                                                      
FORMUL   3   CA    CA 2+                                                        
HELIX    1   1 TRP A   44  LYS A   48  5                                   5    
HELIX    2   2 ASP A   49  THR A   59  1                                  11    
HELIX    3   3 GLY A   69  SER A   79  1                                  11    
HELIX    4   4 PRO A   82  ASP A   94  1                                  13    
HELIX    5   5 ASP A  102  GLU A  118  1                                  17    
HELIX    6   6 PRO A  132  ARG A  136  5                                   5    
SHEET    1   A 2 ILE A  67  THR A  68  0                                        
SHEET    2   A 2 LEU A 100  LEU A 101 -1  O  LEU A 101   N  ILE A  67           
LINK         O   LEU A 100                CA    CA A 141     1555   1555  2.03  
LINK         OE2 GLU A 105                CA    CA A 141     1555   1555  1.87  
LINK         OE1 GLU A 105                CA    CA A 141     1555   1555  1.92  
SITE     1 AC1  3 LYS A  66  ASP A  94  ASP A  98                               
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000