PDB Short entry for 2KHX HEADER GENE REGULATION,NUCLEAR PROTEIN 13-APR-09 2KHX TITLE DROSHA DOUBLE-STRANDED RNA BINDING MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1259-1337; COMPND 5 SYNONYM: RIBONUCLEASE III, RNASE III, DROSHA, P241; COMPND 6 EC: 3.1.26.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNASEN, RN3, RNASE3L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21C KEYWDS DROSHA, RNA BINDING DOMAIN, HYDROLASE, GENE REGULATION, NUCLEAR KEYWDS 2 PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR G.A.MUELLER,M.MILLER,M.GHOSH,E.F.DEROSE,R.E.LONDON,T.HALL REVDAT 3 26-FEB-20 2KHX 1 REMARK SEQADV REVDAT 2 21-MAR-12 2KHX 1 JRNL VERSN REVDAT 1 23-FEB-10 2KHX 0 JRNL AUTH G.A.MUELLER,M.T.MILLER,E.F.DEROSE,M.GHOSH,R.E.LONDON, JRNL AUTH 2 T.M.HALL JRNL TITL SOLUTION STRUCTURE OF THE DROSHA DOUBLE-STRANDED RNA-BINDING JRNL TITL 2 DOMAIN. JRNL REF SILENCE V. 1 2 2010 JRNL REFN ESSN 1758-907X JRNL PMID 20226070 JRNL DOI 10.1186/1758-907X-1-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH, REFINE.PY LOOSENED REMARK 3 RESTRAINTS AFTER CYANA CALCULATIONS REMARK 4 REMARK 4 2KHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-09. REMARK 100 THE DEPOSITION ID IS D_1000101142. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 25 MM [U-2H] TRIS, 100 REMARK 210 MM POTASSIUM CHLORIDE, 1 MM [U- REMARK 210 2H] DTT, 1 MM EDTA, 10 UM DSS, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 CN-4D SIMULTANEOUS NOESY; HB-HE/ REMARK 210 HD-AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 HIS A 1338 REMARK 465 HIS A 1339 REMARK 465 HIS A 1340 REMARK 465 HIS A 1341 REMARK 465 HIS A 1342 REMARK 465 HIS A 1343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A1260 -40.83 -172.71 REMARK 500 1 CYS A1311 116.37 -171.35 REMARK 500 1 PRO A1315 -75.08 -69.41 REMARK 500 1 PHE A1334 151.05 -34.99 REMARK 500 1 PRO A1335 -178.90 -69.61 REMARK 500 1 GLN A1336 100.83 -38.10 REMARK 500 2 LYS A1262 9.63 47.38 REMARK 500 2 CYS A1311 144.50 -177.00 REMARK 500 2 LYS A1331 45.39 -146.24 REMARK 500 2 PHE A1334 153.98 -42.48 REMARK 500 2 PRO A1335 174.77 -39.73 REMARK 500 2 GLN A1336 117.49 -36.89 REMARK 500 3 ASP A1260 63.62 -173.07 REMARK 500 3 PRO A1261 -95.14 -75.89 REMARK 500 4 CYS A1311 47.10 -170.80 REMARK 500 4 PHE A1334 -179.56 -49.27 REMARK 500 5 ASP A1260 74.28 -177.02 REMARK 500 5 LYS A1262 31.69 -162.29 REMARK 500 5 LYS A1277 -166.25 -79.17 REMARK 500 5 CYS A1311 126.77 -171.11 REMARK 500 5 PHE A1334 151.10 -41.39 REMARK 500 5 PRO A1335 174.12 -41.49 REMARK 500 6 LYS A1262 59.42 -162.36 REMARK 500 6 LEU A1272 84.04 -69.93 REMARK 500 6 GLU A1275 90.59 -66.65 REMARK 500 6 PRO A1315 -73.03 -68.01 REMARK 500 6 PHE A1334 110.59 -30.39 REMARK 500 6 GLN A1336 117.27 -38.35 REMARK 500 7 LYS A1262 11.42 -62.25 REMARK 500 7 LEU A1272 85.95 -68.19 REMARK 500 7 PHE A1334 154.62 -37.05 REMARK 500 7 GLN A1336 109.90 -37.17 REMARK 500 8 ASP A1260 -43.49 -154.66 REMARK 500 8 HIS A1294 -6.73 -59.93 REMARK 500 8 CYS A1311 105.91 -172.44 REMARK 500 8 PRO A1315 -76.83 -68.78 REMARK 500 8 PHE A1334 150.54 -37.86 REMARK 500 8 GLN A1336 117.82 -39.22 REMARK 500 9 LYS A1262 8.52 52.55 REMARK 500 9 LYS A1305 39.34 39.51 REMARK 500 9 CYS A1311 138.50 -173.60 REMARK 500 9 PRO A1315 -70.79 -63.65 REMARK 500 10 LEU A1287 -169.70 -77.54 REMARK 500 10 CYS A1311 121.42 -174.17 REMARK 500 10 PHE A1334 94.06 -30.68 REMARK 500 10 GLN A1336 159.33 -37.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16256 RELATED DB: BMRB DBREF 2KHX A 1259 1337 UNP Q9NRR4 RNC_HUMAN 1259 1337 SEQADV 2KHX HIS A 1338 UNP Q9NRR4 EXPRESSION TAG SEQADV 2KHX HIS A 1339 UNP Q9NRR4 EXPRESSION TAG SEQADV 2KHX HIS A 1340 UNP Q9NRR4 EXPRESSION TAG SEQADV 2KHX HIS A 1341 UNP Q9NRR4 EXPRESSION TAG SEQADV 2KHX HIS A 1342 UNP Q9NRR4 EXPRESSION TAG SEQADV 2KHX HIS A 1343 UNP Q9NRR4 EXPRESSION TAG SEQRES 1 A 85 ASN ASP PRO LYS SER GLN LEU GLN GLN CYS CYS LEU THR SEQRES 2 A 85 LEU ARG THR GLU GLY LYS GLU PRO ASP ILE PRO LEU TYR SEQRES 3 A 85 LYS THR LEU GLN THR VAL GLY PRO SER HIS ALA ARG THR SEQRES 4 A 85 TYR THR VAL ALA VAL TYR PHE LYS GLY GLU ARG ILE GLY SEQRES 5 A 85 CYS GLY LYS GLY PRO SER ILE GLN GLN ALA GLU MET GLY SEQRES 6 A 85 ALA ALA MET ASP ALA LEU GLU LYS TYR ASN PHE PRO GLN SEQRES 7 A 85 MET HIS HIS HIS HIS HIS HIS HELIX 1 1 LYS A 1262 LEU A 1272 1 11 HELIX 2 2 SER A 1316 GLU A 1330 1 15 SHEET 1 A 3 TYR A1284 THR A1286 0 SHEET 2 A 3 TYR A1298 PHE A1304 -1 O ALA A1301 N LYS A1285 SHEET 3 A 3 GLU A1307 ARG A1308 -1 O GLU A1307 N PHE A1304 SHEET 1 B 3 TYR A1284 THR A1286 0 SHEET 2 B 3 TYR A1298 PHE A1304 -1 O ALA A1301 N LYS A1285 SHEET 3 B 3 GLY A1312 GLY A1314 -1 O GLY A1314 N TYR A1298 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000