PDB Short entry for 2KI5 HEADER TRANSFERASE 12-FEB-99 2KI5 TITLE HERPES SIMPLEX TYPE-1 THYMIDINE KINASE IN COMPLEX WITH THE DRUG TITLE 2 ACICLOVIR AT 1.9A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (THYMIDINE KINASE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TK; COMPND 5 EC: 2.7.1.21; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ACICLOVIR, ANTIVIRAL DRUG AS DEPOSITED IN 1KI5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: HERPES SIMPLEX VIRUS TYPE 1; SOURCE 4 ORGANISM_TAXID: 10298; SOURCE 5 STRAIN: SY211; SOURCE 6 GENE: TK; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SY211; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT7:HSVTK; SOURCE 11 EXPRESSION_SYSTEM_GENE: TK KEYWDS TRANSFERASE (PHOSPHOTRANSFERASE) THYMID, TRANSFERASE KEYWDS 2 (PHOSPHOTRANSFERASE) THYMIDINE KINASE; VIRIDAE; DS-DNA ENVELOPED KEYWDS 3 VIRUSES; HERPESVIRIDAE; ALPHAHERPESVIRINAE ANTIVIRAL DRUG KEYWDS 4 (ACICLOVIR), TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.BENNETT,F.WIEN,J.N.CHAMPNESS,T.BATUWANGALA,T.RUTHERFORD, AUTHOR 2 W.C.SUMMERS,H.SUN,G.WRIGHT,M.R.SANDERSON REVDAT 5 30-AUG-23 2KI5 1 REMARK REVDAT 4 24-FEB-09 2KI5 1 VERSN REVDAT 3 01-APR-03 2KI5 1 JRNL REVDAT 2 17-MAY-99 2KI5 1 TITLE REVDAT 1 04-MAR-99 2KI5 0 SPRSDE 02-MAR-99 2KI5 1KI5 JRNL AUTH M.S.BENNETT,F.WIEN,J.N.CHAMPNESS,T.BATUWANGALA,T.RUTHERFORD, JRNL AUTH 2 W.C.SUMMERS,H.SUN,G.WRIGHT,M.R.SANDERSON JRNL TITL STRUCTURE TO 1.9 A RESOLUTION OF A COMPLEX WITH HERPES JRNL TITL 2 SIMPLEX VIRUS TYPE-1 THYMIDINE KINASE OF A NOVEL, JRNL TITL 3 NON-SUBSTRATE INHIBITOR: X-RAY CRYSTALLOGRAPHIC COMPARISON JRNL TITL 4 WITH BINDING OF ACICLOVIR. JRNL REF FEBS LETT. V. 443 121 1999 JRNL REFN ISSN 0014-5793 JRNL PMID 9989588 JRNL DOI 10.1016/S0014-5793(98)01619-6 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1F REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.0 REMARK 3 NUMBER OF REFLECTIONS : 47727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4766 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3057 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 323 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4627 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.850 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.31 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.474 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : INDIVIDUAL B-FACTOR REFINEMENT REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; 4.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.500 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.000 ; 4.000 REMARK 3 REMARK 3 NCS MODEL : NCS RESTRAINT NOT USED IN FINAL REFT. STAGES. REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : JNC_PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : JNC_PARAM19.SOL REMARK 3 PARAMETER FILE 3 : JNC_SO4.PAR ALSO JNC_GAN. REMARK 3 PARAMETER FILE 4 : JNC_PARNAH1E.DNA REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : JNC_TOPH19.SOL REMARK 3 TOPOLOGY FILE 2 : JNC_TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 3 : JNC_SO4.TOP REMARK 3 TOPOLOGY FILE 4 : ACIC.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NCS RESTRAINTS NOT USED IN FINAL REMARK 3 CYCLES. REMARK 4 REMARK 4 2KI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-99. REMARK 100 THE DEPOSITION ID IS D_1000000480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : APR-98 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : OTWINOWSKI MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63458 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 16.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1KIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITIONS: PUBLISHED REMARK 280 IN BENNETT, M.S. ET AL. FEBS LETT., VOL.443 (1999) 121-125, PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.40000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.40000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.05000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.90000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.05000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.90000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.40000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.90000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.05000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.90000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 PHE A 13 REMARK 465 ASP A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 22 REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 LEU A 29 REMARK 465 ARG A 30 REMARK 465 PRO A 31 REMARK 465 ARG A 32 REMARK 465 ARG A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 GLU A 39 REMARK 465 VAL A 40 REMARK 465 ARG A 41 REMARK 465 PRO A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 LYS A 45 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 ASP A 76 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 PRO A 153 REMARK 465 THR A 265 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 GLY A 279 REMARK 465 ASN A 376 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 PHE B 13 REMARK 465 ASP B 14 REMARK 465 GLN B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 ARG B 18 REMARK 465 SER B 19 REMARK 465 ARG B 20 REMARK 465 GLY B 21 REMARK 465 HIS B 22 REMARK 465 SER B 23 REMARK 465 ASN B 24 REMARK 465 ARG B 25 REMARK 465 ARG B 26 REMARK 465 THR B 27 REMARK 465 ALA B 28 REMARK 465 LEU B 29 REMARK 465 ARG B 30 REMARK 465 PRO B 31 REMARK 465 ARG B 32 REMARK 465 ARG B 33 REMARK 465 GLN B 34 REMARK 465 GLN B 35 REMARK 465 GLU B 36 REMARK 465 ALA B 37 REMARK 465 THR B 38 REMARK 465 GLU B 39 REMARK 465 VAL B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLN B 44 REMARK 465 LYS B 45 REMARK 465 SER B 74 REMARK 465 ARG B 75 REMARK 465 ASP B 76 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 HIS B 151 REMARK 465 ALA B 152 REMARK 465 PRO B 153 REMARK 465 GLY B 264 REMARK 465 THR B 265 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 PRO B 274 REMARK 465 GLN B 275 REMARK 465 SER B 276 REMARK 465 ASN B 277 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 46 CG SD CE REMARK 470 VAL A 70 CA C O CB CG1 CG2 REMARK 470 GLY A 148 CA C O REMARK 470 PRO A 154 CG CD REMARK 470 GLY A 264 CA C O REMARK 470 PRO A 280 CG CD REMARK 470 ALA A 375 CA C O CB REMARK 470 MET B 46 CG SD CE REMARK 470 GLY B 73 CA C O REMARK 470 GLY B 148 CA C O REMARK 470 PRO B 154 CG CD REMARK 470 ARG B 220 CG CD NE CZ NH1 NH2 REMARK 470 SER B 263 CA C O CB OG REMARK 470 ALA B 375 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 AC2 B 2 O HOH B 590 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 47 174.23 -57.00 REMARK 500 ILE A 78 109.73 -167.03 REMARK 500 PRO A 84 50.95 -65.97 REMARK 500 VAL A 90 -49.30 -135.40 REMARK 500 ARG A 163 150.07 84.96 REMARK 500 LEU A 170 -66.44 -145.65 REMARK 500 SER A 263 -25.51 -143.01 REMARK 500 ASP A 330 56.27 -69.29 REMARK 500 GLU A 374 -63.62 -96.71 REMARK 500 VAL B 90 -59.90 -134.08 REMARK 500 GLU B 95 66.87 37.88 REMARK 500 ARG B 163 154.51 83.80 REMARK 500 LEU B 170 -61.69 -152.89 REMARK 500 LEU B 208 118.51 -168.37 REMARK 500 ALA B 218 39.06 -62.08 REMARK 500 LYS B 219 -69.19 -171.21 REMARK 500 ARG B 220 53.70 -64.25 REMARK 500 PHE B 292 32.93 -98.25 REMARK 500 ARG B 293 45.75 -104.76 REMARK 500 GLU B 374 -18.56 171.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AC2 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AC2 B 2 DBREF 2KI5 A 11 376 UNP P03176 KITH_HSV11 11 376 DBREF 2KI5 B 11 376 UNP P03176 KITH_HSV11 11 376 SEQRES 1 A 366 SER ALA PHE ASP GLN ALA ALA ARG SER ARG GLY HIS SER SEQRES 2 A 366 ASN ARG ARG THR ALA LEU ARG PRO ARG ARG GLN GLN GLU SEQRES 3 A 366 ALA THR GLU VAL ARG PRO GLU GLN LYS MET PRO THR LEU SEQRES 4 A 366 LEU ARG VAL TYR ILE ASP GLY PRO HIS GLY MET GLY LYS SEQRES 5 A 366 THR THR THR THR GLN LEU LEU VAL ALA LEU GLY SER ARG SEQRES 6 A 366 ASP ASP ILE VAL TYR VAL PRO GLU PRO MET THR TYR TRP SEQRES 7 A 366 ARG VAL LEU GLY ALA SER GLU THR ILE ALA ASN ILE TYR SEQRES 8 A 366 THR THR GLN HIS ARG LEU ASP GLN GLY GLU ILE SER ALA SEQRES 9 A 366 GLY ASP ALA ALA VAL VAL MET THR SER ALA GLN ILE THR SEQRES 10 A 366 MET GLY MET PRO TYR ALA VAL THR ASP ALA VAL LEU ALA SEQRES 11 A 366 PRO HIS ILE GLY GLY GLU ALA GLY SER SER HIS ALA PRO SEQRES 12 A 366 PRO PRO ALA LEU THR LEU ILE PHE ASP ARG HIS PRO ILE SEQRES 13 A 366 ALA ALA LEU LEU CYS TYR PRO ALA ALA ARG TYR LEU MET SEQRES 14 A 366 GLY SER MET THR PRO GLN ALA VAL LEU ALA PHE VAL ALA SEQRES 15 A 366 LEU ILE PRO PRO THR LEU PRO GLY THR ASN ILE VAL LEU SEQRES 16 A 366 GLY ALA LEU PRO GLU ASP ARG HIS ILE ASP ARG LEU ALA SEQRES 17 A 366 LYS ARG GLN ARG PRO GLY GLU ARG LEU ASP LEU ALA MET SEQRES 18 A 366 LEU ALA ALA ILE ARG ARG VAL TYR GLY LEU LEU ALA ASN SEQRES 19 A 366 THR VAL ARG TYR LEU GLN CYS GLY GLY SER TRP ARG GLU SEQRES 20 A 366 ASP TRP GLY GLN LEU SER GLY THR ALA VAL PRO PRO GLN SEQRES 21 A 366 GLY ALA GLU PRO GLN SER ASN ALA GLY PRO ARG PRO HIS SEQRES 22 A 366 ILE GLY ASP THR LEU PHE THR LEU PHE ARG ALA PRO GLU SEQRES 23 A 366 LEU LEU ALA PRO ASN GLY ASP LEU TYR ASN VAL PHE ALA SEQRES 24 A 366 TRP ALA LEU ASP VAL LEU ALA LYS ARG LEU ARG SER MET SEQRES 25 A 366 HIS VAL PHE ILE LEU ASP TYR ASP GLN SER PRO ALA GLY SEQRES 26 A 366 CYS ARG ASP ALA LEU LEU GLN LEU THR SER GLY MET VAL SEQRES 27 A 366 GLN THR HIS VAL THR THR PRO GLY SER ILE PRO THR ILE SEQRES 28 A 366 CYS ASP LEU ALA ARG THR PHE ALA ARG GLU MET GLY GLU SEQRES 29 A 366 ALA ASN SEQRES 1 B 366 SER ALA PHE ASP GLN ALA ALA ARG SER ARG GLY HIS SER SEQRES 2 B 366 ASN ARG ARG THR ALA LEU ARG PRO ARG ARG GLN GLN GLU SEQRES 3 B 366 ALA THR GLU VAL ARG PRO GLU GLN LYS MET PRO THR LEU SEQRES 4 B 366 LEU ARG VAL TYR ILE ASP GLY PRO HIS GLY MET GLY LYS SEQRES 5 B 366 THR THR THR THR GLN LEU LEU VAL ALA LEU GLY SER ARG SEQRES 6 B 366 ASP ASP ILE VAL TYR VAL PRO GLU PRO MET THR TYR TRP SEQRES 7 B 366 ARG VAL LEU GLY ALA SER GLU THR ILE ALA ASN ILE TYR SEQRES 8 B 366 THR THR GLN HIS ARG LEU ASP GLN GLY GLU ILE SER ALA SEQRES 9 B 366 GLY ASP ALA ALA VAL VAL MET THR SER ALA GLN ILE THR SEQRES 10 B 366 MET GLY MET PRO TYR ALA VAL THR ASP ALA VAL LEU ALA SEQRES 11 B 366 PRO HIS ILE GLY GLY GLU ALA GLY SER SER HIS ALA PRO SEQRES 12 B 366 PRO PRO ALA LEU THR LEU ILE PHE ASP ARG HIS PRO ILE SEQRES 13 B 366 ALA ALA LEU LEU CYS TYR PRO ALA ALA ARG TYR LEU MET SEQRES 14 B 366 GLY SER MET THR PRO GLN ALA VAL LEU ALA PHE VAL ALA SEQRES 15 B 366 LEU ILE PRO PRO THR LEU PRO GLY THR ASN ILE VAL LEU SEQRES 16 B 366 GLY ALA LEU PRO GLU ASP ARG HIS ILE ASP ARG LEU ALA SEQRES 17 B 366 LYS ARG GLN ARG PRO GLY GLU ARG LEU ASP LEU ALA MET SEQRES 18 B 366 LEU ALA ALA ILE ARG ARG VAL TYR GLY LEU LEU ALA ASN SEQRES 19 B 366 THR VAL ARG TYR LEU GLN CYS GLY GLY SER TRP ARG GLU SEQRES 20 B 366 ASP TRP GLY GLN LEU SER GLY THR ALA VAL PRO PRO GLN SEQRES 21 B 366 GLY ALA GLU PRO GLN SER ASN ALA GLY PRO ARG PRO HIS SEQRES 22 B 366 ILE GLY ASP THR LEU PHE THR LEU PHE ARG ALA PRO GLU SEQRES 23 B 366 LEU LEU ALA PRO ASN GLY ASP LEU TYR ASN VAL PHE ALA SEQRES 24 B 366 TRP ALA LEU ASP VAL LEU ALA LYS ARG LEU ARG SER MET SEQRES 25 B 366 HIS VAL PHE ILE LEU ASP TYR ASP GLN SER PRO ALA GLY SEQRES 26 B 366 CYS ARG ASP ALA LEU LEU GLN LEU THR SER GLY MET VAL SEQRES 27 B 366 GLN THR HIS VAL THR THR PRO GLY SER ILE PRO THR ILE SEQRES 28 B 366 CYS ASP LEU ALA ARG THR PHE ALA ARG GLU MET GLY GLU SEQRES 29 B 366 ALA ASN HET SO4 A 4 5 HET AC2 A 1 21 HET SO4 B 3 5 HET AC2 B 2 16 HETNAM SO4 SULFATE ION HETNAM AC2 9-HYROXYETHOXYMETHYLGUANINE FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 AC2 2(C8 H11 N5 O3) FORMUL 7 HOH *292(H2 O) HELIX 1 1 LYS A 62 GLN A 67 1 6 HELIX 2 2 MET A 85 ARG A 89 1 5 HELIX 3 3 THR A 96 ASP A 108 1 13 HELIX 4 4 ALA A 114 HIS A 142 1 29 HELIX 5 5 PRO A 165 LEU A 169 1 5 HELIX 6 6 CYS A 171 TYR A 177 1 7 HELIX 7 7 PRO A 184 LEU A 193 1 10 HELIX 8 8 GLU A 210 LYS A 219 1 10 HELIX 9 9 LEU A 229 GLN A 250 1 22 HELIX 10 10 TRP A 255 LEU A 262 1 8 HELIX 11 11 ILE A 284 ASP A 286 5 3 HELIX 12 12 LEU A 288 PHE A 292 5 5 HELIX 13 13 PRO A 295 LEU A 297 5 3 HELIX 14 14 ASN A 306 ARG A 320 1 15 HELIX 15 15 PRO A 333 THR A 344 1 12 HELIX 16 16 SER A 357 MET A 372 1 16 HELIX 17 17 LYS B 62 ALA B 71 1 10 HELIX 18 18 MET B 85 ARG B 89 1 5 HELIX 19 19 THR B 96 GLN B 109 1 14 HELIX 20 20 ALA B 114 LEU B 139 1 26 HELIX 21 21 PRO B 165 LEU B 169 1 5 HELIX 22 22 CYS B 171 LEU B 178 1 8 HELIX 23 23 PRO B 184 LEU B 193 1 10 HELIX 24 24 GLU B 210 LEU B 217 1 8 HELIX 25 25 LEU B 229 GLN B 250 1 22 HELIX 26 26 TRP B 255 GLN B 261 1 7 HELIX 27 27 ILE B 284 ASP B 286 5 3 HELIX 28 28 LEU B 288 PHE B 292 5 5 HELIX 29 29 PRO B 295 LEU B 297 5 3 HELIX 30 30 ASN B 306 SER B 321 1 16 HELIX 31 31 PRO B 333 GLY B 346 1 14 HELIX 32 32 SER B 357 MET B 372 1 16 SHEET 1 A 5 HIS A 323 ASP A 328 0 SHEET 2 A 5 ASN A 202 ALA A 207 1 N ILE A 203 O HIS A 323 SHEET 3 A 5 LEU A 49 ILE A 54 1 N TYR A 53 O ASN A 202 SHEET 4 A 5 LEU A 157 ASP A 162 1 N LEU A 157 O LEU A 50 SHEET 5 A 5 ILE A 78 VAL A 81 1 N VAL A 79 O THR A 158 SHEET 1 B 5 HIS B 323 ASP B 328 0 SHEET 2 B 5 ASN B 202 ALA B 207 1 N ILE B 203 O HIS B 323 SHEET 3 B 5 LEU B 49 ASP B 55 1 N TYR B 53 O ASN B 202 SHEET 4 B 5 LEU B 157 ASP B 162 1 N LEU B 157 O LEU B 50 SHEET 5 B 5 ILE B 78 VAL B 81 1 N VAL B 79 O THR B 158 SITE 1 AC1 8 HIS B 58 GLY B 59 MET B 60 GLY B 61 SITE 2 AC1 8 LYS B 62 THR B 63 ARG B 222 HOH B 594 SITE 1 AC2 9 HIS A 58 GLY A 59 MET A 60 GLY A 61 SITE 2 AC2 9 LYS A 62 THR A 63 ARG A 222 HOH A 696 SITE 3 AC2 9 HOH A 783 SITE 1 AC3 17 HIS A 58 GLU A 83 TRP A 88 ILE A 100 SITE 2 AC3 17 TYR A 101 GLN A 125 MET A 128 ARG A 163 SITE 3 AC3 17 TYR A 172 ARG A 176 ARG A 222 GLU A 225 SITE 4 AC3 17 HOH A 586 HOH A 587 HOH A 589 HOH A 776 SITE 5 AC3 17 HOH A 779 SITE 1 AC4 13 GLU B 83 TRP B 88 ILE B 97 TYR B 101 SITE 2 AC4 13 GLN B 125 MET B 128 ARG B 163 TYR B 172 SITE 3 AC4 13 ARG B 222 HOH B 588 HOH B 590 HOH B 778 SITE 4 AC4 13 HOH B 784 CRYST1 114.100 117.800 108.800 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009191 0.00000