PDB Short entry for 2KK0 HEADER TRANSCRIPTION REGULATOR 14-JUN-09 2KK0 TITLE SOLUTION STRUCTURE OF DEAD RINGER-LIKE PROTEIN 1 (AT-RICH INTERACTIVE TITLE 2 DOMAIN-CONTAINING PROTEIN 3A) FROM HOMO SAPIENS, NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM (NESG) TARGET HR4394C COMPND MOL_ID: 1; COMPND 2 MOLECULE: AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ARID DOMAIN; COMPND 5 SYNONYM: ARID DOMAIN-CONTAINING PROTEIN 3A, DEAD RINGER-LIKE PROTEIN COMPND 6 1, B-CELL REGULATOR OF IGH TRANSCRIPTION, BRIGHT, E2F-BINDING PROTEIN COMPND 7 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARID3A, DRIL1, DRIL3, DRX, E2FBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS DEAD RINGER, AT-RICH INTERACTION DOMAIN, NESG, ARID, CYTOPLASM, DNA- KEYWDS 2 BINDING, NUCLEUS, PHOSPHOPROTEIN, POLYMORPHISM, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 4 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 5 TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,D.WANG,C.NWOSU,L.OWENS,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 5 14-JUN-23 2KK0 1 REMARK REVDAT 4 26-FEB-20 2KK0 1 REMARK SEQADV REVDAT 3 23-JUN-10 2KK0 1 JRNL REVDAT 2 16-FEB-10 2KK0 1 REMARK REVDAT 1 14-JUL-09 2KK0 0 JRNL AUTH G.LIU,Y.J.HUANG,R.XIAO,D.WANG,T.B.ACTON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE ARID DOMAIN OF HUMAN AT-RICH JRNL TITL 2 INTERACTIVE DOMAIN-CONTAINING PROTEIN 3A: A HUMAN CANCER JRNL TITL 3 PROTEIN INTERACTION NETWORK TARGET. JRNL REF PROTEINS V. 78 2170 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20455271 JRNL DOI 10.1002/PROT.22718 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, AUTOSTRUCTURE 1.2, CYANA 3.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KK0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101215. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.92 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN 95% H2O/5% D2O; 0.92 MM REMARK 210 [U-100% 13C; U-100% 15N] PROTEIN, REMARK 210 100% D2O; 0.95 MM [U-10% 13C; U- REMARK 210 100% 15N] PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D 1H-13C NOESY; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D 1H-13C-15N SIMUTANEOUS REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 1.2, CYANA 3.0, REMARK 210 AUTOASSIGN 2.1, XEASY 1.3, REMARK 210 NMRPIPE, TOPSPIN, VNMRJ REMARK 210 METHOD USED : MOLECULAR DYNAMICS, DISTANCE REMARK 210 GEOMETRY, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 4 94.78 -64.81 REMARK 500 1 HIS A 5 -71.96 -76.67 REMARK 500 1 HIS A 7 -79.00 -71.30 REMARK 500 1 HIS A 8 -76.11 40.15 REMARK 500 1 GLU A 20 29.97 -77.96 REMARK 500 1 PHE A 23 80.11 -57.93 REMARK 500 1 THR A 51 73.49 -162.08 REMARK 500 1 ASP A 65 90.81 -56.05 REMARK 500 1 LYS A 86 14.78 58.64 REMARK 500 1 THR A 102 -72.90 -50.64 REMARK 500 1 TYR A 117 -57.54 -157.92 REMARK 500 2 PRO A 12 90.26 -55.45 REMARK 500 2 TRP A 17 -72.48 -95.40 REMARK 500 2 GLU A 20 -58.98 -155.21 REMARK 500 2 GLN A 22 43.14 -76.16 REMARK 500 2 THR A 51 84.76 -155.80 REMARK 500 2 ASP A 65 88.25 -54.20 REMARK 500 2 LEU A 87 27.99 -77.75 REMARK 500 2 ARG A 124 -72.64 -125.32 REMARK 500 3 HIS A 4 88.77 -56.28 REMARK 500 3 HIS A 6 -76.89 -80.41 REMARK 500 3 PRO A 12 95.04 -65.63 REMARK 500 3 GLN A 22 110.91 -167.93 REMARK 500 3 PHE A 23 96.29 -42.66 REMARK 500 3 ASP A 65 84.71 -59.21 REMARK 500 3 LYS A 86 15.79 57.85 REMARK 500 3 LEU A 87 33.60 -83.21 REMARK 500 3 ILE A 101 96.90 -62.16 REMARK 500 3 ARG A 124 -43.77 -158.97 REMARK 500 3 ARG A 144 172.17 179.19 REMARK 500 4 HIS A 3 96.49 -55.58 REMARK 500 4 HIS A 4 84.69 -66.15 REMARK 500 4 HIS A 7 94.29 -61.36 REMARK 500 4 PRO A 12 106.35 -48.98 REMARK 500 4 HIS A 14 76.78 -118.22 REMARK 500 4 TRP A 17 -79.87 -135.99 REMARK 500 4 GLU A 21 -172.76 57.98 REMARK 500 4 GLN A 22 98.69 -59.27 REMARK 500 4 ASN A 54 -81.80 -88.71 REMARK 500 4 LYS A 61 -2.27 76.15 REMARK 500 4 LEU A 64 99.13 -69.68 REMARK 500 4 ASP A 65 85.72 -58.91 REMARK 500 4 LEU A 87 32.91 -80.11 REMARK 500 5 HIS A 8 84.32 -173.34 REMARK 500 5 PRO A 12 41.78 -82.13 REMARK 500 5 GLU A 21 -178.53 59.29 REMARK 500 5 LYS A 61 -3.02 72.76 REMARK 500 5 ASP A 65 83.44 -57.98 REMARK 500 5 LEU A 87 32.70 -96.46 REMARK 500 5 THR A 99 5.81 -65.96 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16348 RELATED DB: BMRB REMARK 900 RELATED ID: HR4394C RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT THEIR CONSTRUCT INCLUDES AN 11-RESIDUE N- REMARK 999 TERMINAL HEXAHIS PURIFIATION TAG; RESIDUE NUMBERS 12 145 CORRESPOND REMARK 999 TO RESIDUES 218 TO 351 OF THE FULL-LENGTH HUMAN ARID3 PROTEIN. DBREF 2KK0 A 12 145 UNP Q99856 ARI3A_HUMAN 218 351 SEQADV 2KK0 MET A 1 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 GLY A 2 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 HIS A 3 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 HIS A 4 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 HIS A 5 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 HIS A 6 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 HIS A 7 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 HIS A 8 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 SER A 9 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 HIS A 10 UNP Q99856 EXPRESSION TAG SEQADV 2KK0 MET A 11 UNP Q99856 EXPRESSION TAG SEQRES 1 A 145 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET PRO ASP SEQRES 2 A 145 HIS GLY ASP TRP THR TYR GLU GLU GLN PHE LYS GLN LEU SEQRES 3 A 145 TYR GLU LEU ASP GLY ASP PRO LYS ARG LYS GLU PHE LEU SEQRES 4 A 145 ASP ASP LEU PHE SER PHE MET GLN LYS ARG GLY THR PRO SEQRES 5 A 145 VAL ASN ARG ILE PRO ILE MET ALA LYS GLN VAL LEU ASP SEQRES 6 A 145 LEU PHE MET LEU TYR VAL LEU VAL THR GLU LYS GLY GLY SEQRES 7 A 145 LEU VAL GLU VAL ILE ASN LYS LYS LEU TRP ARG GLU ILE SEQRES 8 A 145 THR LYS GLY LEU ASN LEU PRO THR SER ILE THR SER ALA SEQRES 9 A 145 ALA PHE THR LEU ARG THR GLN TYR MET LYS TYR LEU TYR SEQRES 10 A 145 PRO TYR GLU CYS GLU LYS ARG GLY LEU SER ASN PRO ASN SEQRES 11 A 145 GLU LEU GLN ALA ALA ILE ASP SER ASN ARG ARG GLU GLY SEQRES 12 A 145 ARG ARG HELIX 1 1 LYS A 24 LEU A 29 1 6 HELIX 2 2 ASP A 32 ARG A 49 1 18 HELIX 3 3 ASP A 65 LYS A 76 1 12 HELIX 4 4 GLY A 78 LYS A 86 1 9 HELIX 5 5 LEU A 87 LEU A 95 1 9 HELIX 6 6 SER A 103 LEU A 116 1 14 HELIX 7 7 TYR A 117 LYS A 123 1 7 HELIX 8 8 ASN A 128 ARG A 141 1 14 SHEET 1 A 2 ILE A 58 MET A 59 0 SHEET 2 A 2 GLN A 62 VAL A 63 -1 O GLN A 62 N MET A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000