PDB Short entry for 2KK1 HEADER TRANSFERASE 14-JUN-09 2KK1 TITLE SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF TYROSINE-PROTEIN KINASE TITLE 2 ABL2 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 (NESG) TARGET HR5537A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1058-1182; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 2, ABELSON- COMPND 6 RELATED GENE PROTEIN, TYROSINE KINASE ARG; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL2, ABLL, ARG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS METHODS DEVELOPMENT, TYROSIN PROTEIN KINASE ABL2, F-ACTIN BINDING KEYWDS 2 DOMAIN, NESG, ALTERNATIVE SPLICING, ATP-BINDING, CELL ADHESION, KEYWDS 3 CYTOPLASM, CYTOSKELETON, KINASE, LIPOPROTEIN, MAGNESIUM, MANGANESE, KEYWDS 4 METAL-BINDING, MYRISTATE, NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, KEYWDS 5 POLYMORPHISM, SH2 DOMAIN, SH3 DOMAIN, TRANSFERASE, TYROSINE-PROTEIN KEYWDS 6 KINASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 7 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,D.WANG,C.NWOSU,L.OWENS,R.XIAO,J.LIU,M.C.BARAN,G.SWAPNA, AUTHOR 2 T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 4 13-OCT-21 2KK1 1 SEQADV REVDAT 3 26-FEB-20 2KK1 1 REMARK SEQADV REVDAT 2 02-MAR-10 2KK1 1 JRNL REVDAT 1 11-AUG-09 2KK1 0 JRNL AUTH G.LIU,Y.J.HUANG,R.XIAO,D.WANG,T.B.ACTON,G.T.MONTELIONE JRNL TITL NMR STRUCTURE OF F-ACTIN-BINDING DOMAIN OF ARG/ABL2 FROM JRNL TITL 2 HOMO SAPIENS. JRNL REF PROTEINS V. 78 1326 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20077570 JRNL DOI 10.1002/PROT.22656 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000101216. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 15N] PROTEIN, 95% REMARK 210 H2O/5% D2O; 1.2 MM [U-100% 13C; REMARK 210 U-100% 15N] PROTEIN, 100% D2O; REMARK 210 1.2 MM [U-10% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D 1H-13C NOESY; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C-15N SIMUTANEOUS REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, AUTOSTRUCTURE 2.1, REMARK 210 AUTOASSIGN 2.1, XEASY 1.3, REMARK 210 NMRPIPE 1.3, VNMRJ 1.3, TOPSPIN REMARK 210 1.3 REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING, DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 4 -73.30 -90.91 REMARK 500 1 HIS A 5 59.60 -97.53 REMARK 500 1 ALA A 21 -84.59 -137.41 REMARK 500 1 LYS A 26 -167.77 -106.49 REMARK 500 1 GLN A 27 -51.18 -156.62 REMARK 500 1 ILE A 37 101.71 -55.14 REMARK 500 1 ALA A 108 -74.31 58.87 REMARK 500 1 ALA A 110 -61.00 71.75 REMARK 500 2 ALA A 15 -64.46 70.24 REMARK 500 2 ALA A 108 -39.07 73.19 REMARK 500 3 ALA A 21 -81.60 -65.12 REMARK 500 3 ARG A 23 93.46 -169.59 REMARK 500 3 LYS A 24 -56.97 -130.46 REMARK 500 3 GLN A 27 -85.72 -141.11 REMARK 500 3 ALA A 108 -68.67 63.15 REMARK 500 3 ALA A 110 -56.47 74.04 REMARK 500 4 HIS A 3 99.25 -171.43 REMARK 500 4 HIS A 4 -70.76 -137.17 REMARK 500 4 HIS A 10 118.82 -164.36 REMARK 500 4 ALA A 15 116.29 -167.61 REMARK 500 4 ALA A 21 -76.34 -67.73 REMARK 500 4 GLN A 82 98.11 -68.93 REMARK 500 4 ALA A 108 -68.97 63.17 REMARK 500 4 ALA A 110 -62.03 71.21 REMARK 500 5 HIS A 5 9.22 -69.12 REMARK 500 5 ILE A 37 89.98 -69.11 REMARK 500 6 HIS A 7 27.13 -176.65 REMARK 500 6 MET A 11 91.07 -67.28 REMARK 500 6 ALA A 15 93.15 -59.26 REMARK 500 6 ALA A 16 84.94 -150.67 REMARK 500 6 ALA A 21 -74.57 -56.15 REMARK 500 6 ARG A 23 87.72 60.02 REMARK 500 6 ALA A 108 -68.97 65.93 REMARK 500 6 ALA A 110 -46.12 74.72 REMARK 500 7 ALA A 15 -62.15 -91.72 REMARK 500 7 ALA A 21 -77.14 -141.67 REMARK 500 7 GLN A 27 -53.61 -133.20 REMARK 500 7 ALA A 108 18.09 59.26 REMARK 500 8 ALA A 12 -157.85 -83.51 REMARK 500 8 ASN A 13 -87.17 -102.57 REMARK 500 8 ALA A 16 19.26 59.53 REMARK 500 8 ILE A 37 97.81 -67.86 REMARK 500 8 ALA A 108 -49.73 71.82 REMARK 500 8 ALA A 109 4.85 -69.36 REMARK 500 8 ALA A 110 -59.50 72.22 REMARK 500 9 HIS A 6 77.18 -101.62 REMARK 500 9 SER A 9 88.06 -37.63 REMARK 500 9 GLN A 27 -78.49 -106.66 REMARK 500 9 ALA A 108 -59.31 71.99 REMARK 500 10 HIS A 4 -15.36 67.72 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16349 RELATED DB: BMRB REMARK 900 RELATED ID: HR5537A RELATED DB: TARGETDB DBREF 2KK1 A 11 135 UNP P42684 ABL2_HUMAN 1058 1182 SEQADV 2KK1 MET A 1 UNP P42684 EXPRESSION TAG SEQADV 2KK1 GLY A 2 UNP P42684 EXPRESSION TAG SEQADV 2KK1 HIS A 3 UNP P42684 EXPRESSION TAG SEQADV 2KK1 HIS A 4 UNP P42684 EXPRESSION TAG SEQADV 2KK1 HIS A 5 UNP P42684 EXPRESSION TAG SEQADV 2KK1 HIS A 6 UNP P42684 EXPRESSION TAG SEQADV 2KK1 HIS A 7 UNP P42684 EXPRESSION TAG SEQADV 2KK1 HIS A 8 UNP P42684 EXPRESSION TAG SEQADV 2KK1 SER A 9 UNP P42684 EXPRESSION TAG SEQADV 2KK1 HIS A 10 UNP P42684 EXPRESSION TAG SEQADV 2KK1 ALA A 15 UNP P42684 THR 1062 ENGINEERED MUTATION SEQRES 1 A 135 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA ASN SEQRES 2 A 135 GLY ALA ALA GLY THR LYS VAL ALA LEU ARG LYS THR LYS SEQRES 3 A 135 GLN ALA ALA GLU LYS ILE SER ALA ASP LYS ILE SER LYS SEQRES 4 A 135 GLU ALA LEU LEU GLU CYS ALA ASP LEU LEU SER SER ALA SEQRES 5 A 135 LEU THR GLU PRO VAL PRO ASN SER GLN LEU VAL ASP THR SEQRES 6 A 135 GLY HIS GLN LEU LEU ASP TYR CYS SER GLY TYR VAL ASP SEQRES 7 A 135 CYS ILE PRO GLN THR ARG ASN LYS PHE ALA PHE ARG GLU SEQRES 8 A 135 ALA VAL SER LYS LEU GLU LEU SER LEU GLN GLU LEU GLN SEQRES 9 A 135 VAL SER SER ALA ALA ALA GLY VAL PRO GLY THR ASN PRO SEQRES 10 A 135 VAL LEU ASN ASN LEU LEU SER CYS VAL GLN GLU ILE SER SEQRES 11 A 135 ASP VAL VAL GLN ARG HELIX 1 1 VAL A 20 THR A 25 1 6 HELIX 2 2 SER A 38 GLU A 55 1 18 HELIX 3 3 PRO A 58 VAL A 77 1 20 HELIX 4 4 ASP A 78 ILE A 80 5 3 HELIX 5 5 GLN A 82 SER A 107 1 26 HELIX 6 6 ALA A 108 ALA A 110 5 3 HELIX 7 7 ASN A 116 VAL A 133 1 18 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000