PDB Short entry for 2KKQ
HEADER    STRUCTURAL PROTEIN                      29-JUN-09   2KKQ              
TITLE     SOLUTION NMR STRUCTURE OF THE IG-LIKE C2-TYPE 2 DOMAIN OF HUMAN       
TITLE    2 MYOTILIN. NORTHEAST STRUCTURAL GENOMICS TARGET HR3158.               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: MYOTILIN;                                                  
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: IG-LIKE C2-TYPE 2 DOMAIN;                                  
COMPND   5 SYNONYM: TITIN IMMUNOGLOBULIN DOMAIN PROTEIN, MYOFIBRILLAR TITIN-LIKE
COMPND   6 IG DOMAINS PROTEIN, 57 KDA CYTOSKELETAL PROTEIN;                     
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: MYOT, TTID;                                                    
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC;                           
SOURCE   9 EXPRESSION_SYSTEM_VECTOR: PET 14-15C                                 
KEYWDS    UNKNOWN FUNCTION, ACTIN-BINDING, CELL MEMBRANE, CYTOPLASM,            
KEYWDS   2 CYTOSKELETON, DISEASE MUTATION, IMMUNOGLOBULIN DOMAIN, LIMB-GIRDLE   
KEYWDS   3 MUSCULAR DYSTROPHY, MEMBRANE, MUSCLE PROTEIN, POLYMORPHISM,          
KEYWDS   4 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST  
KEYWDS   5 STRUCTURAL GENOMICS CONSORTIUM, NESG, STRUCTURAL PROTEIN             
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    P.ROSSI,R.SHASTRY,C.CICCOSANTI,K.HAMILTON,R.XIAO,T.B.ACTON,           
AUTHOR   2 G.V.T.SWAPNA,R.NAIR,J.K.EVERETT,B.ROST,G.T.MONTELIONE,NORTHEAST      
AUTHOR   3 STRUCTURAL GENOMICS CONSORTIUM (NESG)                                
REVDAT   2   26-FEB-20 2KKQ    1       REMARK SEQADV                            
REVDAT   1   07-JUL-09 2KKQ    0                                                
JRNL        AUTH   P.ROSSI,G.T.MONTELIONE                                       
JRNL        TITL   SOLUTION NMR STRUCTURE OF THE IG-LIKE C2-TYPE 2 DOMAIN OF    
JRNL        TITL 2 HUMAN MYOTILIN. NORTHEAST STRUCTURAL GENOMICS TARGET HR3158. 
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 3.0, CNS 1.3                                   
REMARK   3   AUTHORS     : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA),           
REMARK   3                 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS)   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: 20 OF 100 STRUCTURES LOWEST TARGET        
REMARK   3  FUNCTION SELECTED WITH CYANA-3.0. SELECTED MODELS ARE FURTHER       
REMARK   3  REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL WITH     
REMARK   3  PARAM19). STRUCTURE BASED ON 2412 NOE, 230 DIHE. MAX NOE            
REMARK   3  VIOLATION: 0.23 A (1MODEL); MAX DIHE VIOLATION: 8.1 DEG. 3 TOTAL    
REMARK   3  CLOSE CONTACTS PER 20 MODELS. STRUCTURE QUALITY FACTOR (PSVS 1.3)   
REMARK   3  : ORDERED RESIDUES RANGES: 11-112 FOR [S(PHI)+S(PSI)] > 1.8.        
REMARK   3  SECONDARY STRUCTURE - BETA STRANDS: 25-28, 31-38, 46-51, 54-55,     
REMARK   3  63-67, 72-80, 86-94, 97-108 RMSD(ANG): BACKBONE 0.4, ALL HEAVY      
REMARK   3  ATOMS 0.7. RAMA. DISTRIBUTION: 94.7/5.1/0.2/0.0. PROCHECK (PSI-     
REMARK   3  PHI): -0.39/-1.22 (RAW/Z), PROCHECK (ALL): -0.23/-1.36 (RAW/Z),     
REMARK   3  MOLPROBITY CLASH: 14.45/-1.01 (RAW/Z). RPF SCORES ALL ASSIGNED      
REMARK   3  RESIDUES (FIT OF NOESY PEAKLISTS TO STRUCTURE): RECALL: 0.892,      
REMARK   3  PRECISION: 0.934, F-MEASURE: 0.913, DP-SCORE: 0.76.                 
REMARK   4                                                                      
REMARK   4 2KKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000101241.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 0.2                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 0.87 MM [U-100% 13C; U-100% 15N]   
REMARK 210                                   PROTEIN, 200 MM SODIUM CHLORIDE,   
REMARK 210                                   20 MM MES, 50 UM DSS, 10 MM DTT,   
REMARK 210                                   0.02 % SODIUM AZIDE, 5 MM          
REMARK 210                                   CALCIUM CHLORIDE, 90% H2O/10%      
REMARK 210                                   D2O; 0.68 MM [U-5% 13C] PROTEIN,   
REMARK 210                                   200 MM SODIUM CHLORIDE, 20 MM      
REMARK 210                                   MES, 50 UM DSS, 10 MM DTT, 0.02 %  
REMARK 210                                   SODIUM AZIDE, 5 MM CALCIUM         
REMARK 210                                   CHLORIDE, 90% H2O/10% D2O          
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D CBCA(CO)NH; 3D HNCA; 3D         
REMARK 210                                   HNCACB; 3D HBHA(CO)NH; 3D HCCH-    
REMARK 210                                   COSY; 3D CCH-TOCSY; 3D 1H-15N      
REMARK 210                                   NOESY; 3D 1H-13C NOESY; 3D HNCO;   
REMARK 210                                   3D HN(CA)CO; 2D 1H-15N HSQC; 2D    
REMARK 210                                   1H-13C HSQC; 2D 1H-13C HSQC        
REMARK 210                                   HIRES; 2D 1H-15N HET_NOE; 1D 15N_  
REMARK 210                                   T1 SERIES; 1D 15N_T2 SERIES        
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ; 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : TOPSPIN 2.1, SPARKY 2.113,         
REMARK 210                                   NMRPIPE, PINE, MOLMOL, PSVS 1.3,   
REMARK 210                                   PYMOL, PDBSTAT 5.1                 
REMARK 210   METHOD USED                   : MOLECULAR DYNAMICS                 
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION                    
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK:                                                              
REMARK 210  MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING AND BY    
REMARK 210  NMR. T1/T2(CPMG). CONSISTENT WITH MOLECULAR WEIGHT OF MONOMERIC     
REMARK 210  UNIT. STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR SPECTROSCOPY.    
REMARK 210  NOESY ASSIGNMENTS BY CYANA-3.0.                                     
REMARK 210  ASSIGNMENT STATS (ALL RESIDUES INCLUDED): BACKBONE 90.16%,          
REMARK 210  SIDECHAIN 76.91%, AROMATIC (SC) 100%, STEREOSPECIFIC VL METHYL      
REMARK 210  ASSIGNMENT 100%, UNAMBIGUOUS SIDECHAIN NH2 100%.                    
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 THR A 114      100.40    -58.50                                   
REMARK 500  2 HIS A   4      101.95    -52.11                                   
REMARK 500  2 SER A   9       89.03   -160.77                                   
REMARK 500  2 ASN A  53      -14.21     73.67                                   
REMARK 500  2 LEU A 115      151.06     66.91                                   
REMARK 500  3 HIS A   3      -69.76     65.71                                   
REMARK 500  3 HIS A   4      -79.38     63.58                                   
REMARK 500  3 HIS A   6       47.16    -84.36                                   
REMARK 500  3 HIS A  10       69.59   -152.86                                   
REMARK 500  3 GLU A  29      108.98    -56.83                                   
REMARK 500  3 ASN A  53       -8.02     79.57                                   
REMARK 500  4 HIS A   3       85.29    -56.92                                   
REMARK 500  4 ASN A  53        7.08     80.97                                   
REMARK 500  4 ASN A  59       37.20    -82.41                                   
REMARK 500  4 LEU A 115       95.07     61.06                                   
REMARK 500  5 HIS A   4       -7.30     74.00                                   
REMARK 500  5 HIS A   6       97.96    -53.65                                   
REMARK 500  5 ASN A  53       -2.49     75.89                                   
REMARK 500  5 ASN A  59       37.95    -90.49                                   
REMARK 500  6 HIS A   4      -61.15   -107.03                                   
REMARK 500  6 HIS A   8       85.71    -68.10                                   
REMARK 500  8 SER A   9     -163.26   -122.97                                   
REMARK 500  8 ASN A  53      -12.93     76.36                                   
REMARK 500  8 ASN A  59       45.14    -82.16                                   
REMARK 500  8 LEU A 115       75.74     55.19                                   
REMARK 500  9 HIS A   5       90.88     63.43                                   
REMARK 500  9 LEU A 115       83.73     60.54                                   
REMARK 500 11 HIS A   8     -160.35   -100.46                                   
REMARK 500 12 HIS A  10       10.86   -149.87                                   
REMARK 500 12 ASN A  59       37.18    -84.03                                   
REMARK 500 13 HIS A   3      -60.31     70.22                                   
REMARK 500 13 HIS A   5      147.43   -173.39                                   
REMARK 500 13 HIS A   8     -155.69   -133.23                                   
REMARK 500 13 SER A   9      127.15     68.07                                   
REMARK 500 13 ASN A  53       -4.92     71.37                                   
REMARK 500 13 LEU A 115      107.90     60.97                                   
REMARK 500 14 HIS A   4        3.11    -69.88                                   
REMARK 500 14 HIS A   5       96.46    -55.47                                   
REMARK 500 14 HIS A   7       78.86    -67.86                                   
REMARK 500 14 ASN A  59       32.08    -95.32                                   
REMARK 500 15 LEU A 115      100.60     61.20                                   
REMARK 500 16 HIS A   4      107.32    -57.50                                   
REMARK 500 16 HIS A   8      143.39   -178.87                                   
REMARK 500 16 GLU A  29      105.65    -57.04                                   
REMARK 500 16 ASN A  53      -13.75     71.80                                   
REMARK 500 16 LEU A 115       80.49     58.20                                   
REMARK 500 17 HIS A   6      -89.18   -131.91                                   
REMARK 500 17 ASN A  53      -12.47     73.61                                   
REMARK 500 17 THR A 114      -55.10   -126.41                                   
REMARK 500 17 LEU A 115       84.33     59.56                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS      55 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 16370   RELATED DB: BMRB                                 
REMARK 900 RELATED ID: HR3158   RELATED DB: TARGETDB                            
DBREF  2KKQ A   11   116  UNP    Q9UBF9   MYOTI_HUMAN    344    449             
SEQADV 2KKQ MET A    1  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ GLY A    2  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ HIS A    3  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ HIS A    4  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ HIS A    5  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ HIS A    6  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ HIS A    7  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ HIS A    8  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ SER A    9  UNP  Q9UBF9              EXPRESSION TAG                 
SEQADV 2KKQ HIS A   10  UNP  Q9UBF9              EXPRESSION TAG                 
SEQRES   1 A  116  MET GLY HIS HIS HIS HIS HIS HIS SER HIS GLU HIS LYS          
SEQRES   2 A  116  ARG ALA PRO MET PHE ILE TYR LYS PRO GLN SER LYS LYS          
SEQRES   3 A  116  VAL LEU GLU GLY ASP SER VAL LYS LEU GLU CYS GLN ILE          
SEQRES   4 A  116  SER ALA ILE PRO PRO PRO LYS LEU PHE TRP LYS ARG ASN          
SEQRES   5 A  116  ASN GLU MET VAL GLN PHE ASN THR ASP ARG ILE SER LEU          
SEQRES   6 A  116  TYR GLN ASP ASN THR GLY ARG VAL THR LEU LEU ILE LYS          
SEQRES   7 A  116  ASP VAL ASN LYS LYS ASP ALA GLY TRP TYR THR VAL SER          
SEQRES   8 A  116  ALA VAL ASN GLU ALA GLY VAL THR THR CYS ASN THR ARG          
SEQRES   9 A  116  LEU ASP VAL THR ALA ARG PRO ASN GLN THR LEU PRO              
HELIX    1   1 ASN A   81  ALA A   85  5                                   5    
SHEET    1   A 5 LYS A  25  LEU A  28  0                                        
SHEET    2   A 5 GLY A  97  THR A 108  1  O  ASP A 106   N  LYS A  25           
SHEET    3   A 5 GLY A  86  ASN A  94 -1  N  TYR A  88   O  THR A 103           
SHEET    4   A 5 LYS A  46  ARG A  51 -1  N  PHE A  48   O  SER A  91           
SHEET    5   A 5 GLU A  54  MET A  55 -1  O  GLU A  54   N  ARG A  51           
SHEET    1   B 3 ASP A  31  GLN A  38  0                                        
SHEET    2   B 3 ARG A  72  VAL A  80 -1  O  LEU A  75   N  LEU A  35           
SHEET    3   B 3 ILE A  63  GLN A  67 -1  N  SER A  64   O  LEU A  76           
CISPEP   1 ILE A   42    PRO A   43          1        -0.83                     
CISPEP   2 ILE A   42    PRO A   43          2        -1.40                     
CISPEP   3 ILE A   42    PRO A   43          3        -3.29                     
CISPEP   4 ILE A   42    PRO A   43          4        -3.18                     
CISPEP   5 ILE A   42    PRO A   43          5        -2.67                     
CISPEP   6 ILE A   42    PRO A   43          6        -2.77                     
CISPEP   7 ILE A   42    PRO A   43          7        -0.61                     
CISPEP   8 ILE A   42    PRO A   43          8        -2.22                     
CISPEP   9 ILE A   42    PRO A   43          9        -1.60                     
CISPEP  10 ILE A   42    PRO A   43         10        -3.82                     
CISPEP  11 ILE A   42    PRO A   43         11        -1.46                     
CISPEP  12 ILE A   42    PRO A   43         12        -3.99                     
CISPEP  13 ILE A   42    PRO A   43         13        -0.77                     
CISPEP  14 ILE A   42    PRO A   43         14        -3.51                     
CISPEP  15 ILE A   42    PRO A   43         15        -2.91                     
CISPEP  16 ILE A   42    PRO A   43         16        -1.30                     
CISPEP  17 ILE A   42    PRO A   43         17        -2.57                     
CISPEP  18 ILE A   42    PRO A   43         18        -3.41                     
CISPEP  19 ILE A   42    PRO A   43         19        -3.90                     
CISPEP  20 ILE A   42    PRO A   43         20        -1.10                     
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000