PDB Short entry for 2KLL HEADER CYTOKINE 06-JUL-09 2KLL TITLE SOLUTION STRUCTURE OF HUMAN INTERLEUKIN-33 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-33; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 110-270; COMPND 5 SYNONYM: IL-33, INTERLEUKIN-1 FAMILY MEMBER 11, IL-1F11, NUCLEAR COMPND 6 FACTOR FROM HIGH ENDOTHELIAL VENULES, NF-HEV; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IL33, C9ORF26, IL1F11, NFHEV; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET101 KEYWDS INTERLEUKIN, BETA-TREFOIL, CYTOKINE, POLYMORPHISM, SECRETED EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.LINGEL,W.FAIRBROTHER REVDAT 3 14-JUN-23 2KLL 1 DBREF REVDAT 2 26-FEB-20 2KLL 1 REMARK SEQADV REVDAT 1 17-NOV-09 2KLL 0 JRNL AUTH A.LINGEL,T.M.WEISS,M.NIEBUHR,B.PAN,B.A.APPLETON,C.WIESMANN, JRNL AUTH 2 J.F.BAZAN,W.J.FAIRBROTHER JRNL TITL STRUCTURE OF IL-33 AND ITS INTERACTION WITH THE ST2 AND JRNL TITL 2 IL-1RACP RECEPTORS--INSIGHT INTO HETEROTRIMERIC IL-1 JRNL TITL 3 SIGNALING COMPLEXES. JRNL REF STRUCTURE V. 17 1398 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19836339 JRNL DOI 10.1016/J.STR.2009.08.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS REMARK 3 AUTHORS : BRUKER (TOPSPIN), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISTANCE RESTRAINTS WERE DERIVED FROM REMARK 3 15N- OR 13C-RESOLVED 3D NOESY EXPERIMENTS AND A 2D HOMONUCLEAR REMARK 3 1H NOESY EXPERIMENT. RESTRAINTS FOR THE BACKBONE ANGLES PHI AND REMARK 3 PSI WERE DERIVED FROM TALOS. STEREOSPECIFIC ASSIGNMENTS OF LEU, REMARK 3 VAL METHYL GROUPS WERE OBTAINED USING A 10% FRACTIONALLY 13C- REMARK 3 LABELED SAMPLE. FOR THE DEFINITION OF H-BONDS, SLOWLY EXCHANGING REMARK 3 AMIDE PROTONS WERE IDENTIFIED FROM 1H, 15N CORRELATION REMARK 3 EXPERIMENTS AFTER REDISSOLVING LYOPHILIZED PROTEIN IN D2O. REMARK 4 REMARK 4 2KLL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101272. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] INTERLEUKIN REMARK 210 -33, 20 MM SODIUM PHOSPHATE, 100 REMARK 210 MM SODIUM CHLORIDE, 5 MM BETA- REMARK 210 MERCAPTOETHANOL, 95% H2O/5% D2O; REMARK 210 1 MM INTERLEUKIN-33, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM [U-100% 2H] BETA- REMARK 210 MERCAPTOETHANOL, 100% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 INTERLEUKIN-33, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM BETA- REMARK 210 MERCAPTOETHANOL, 95% H2O/5% D2O; REMARK 210 1 MM [U-100% 13C; U-100% 15N] REMARK 210 INTERLEUKIN-33, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM [U-100% 2H] BETA- REMARK 210 MERCAPTOETHANOL, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNHA; 2D 1H-1H NOESY; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 2D 1H-15N HSQC; 2D REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPN, TALOS, ARIA 2.2, CNS, REMARK 210 MOLMOL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 31 6.19 -156.29 REMARK 500 1 LYS A 41 -50.03 -142.80 REMARK 500 1 GLU A 62 -65.24 -165.65 REMARK 500 1 ASP A 68 72.23 57.55 REMARK 500 1 THR A 79 -154.49 -122.09 REMARK 500 1 LYS A 80 -81.19 -90.28 REMARK 500 1 PRO A 101 86.58 -60.97 REMARK 500 1 HIS A 114 -158.90 -122.07 REMARK 500 1 LYS A 133 -89.92 -77.65 REMARK 500 1 ASN A 135 11.22 -162.98 REMARK 500 1 SER A 145 -47.68 -167.34 REMARK 500 2 ILE A 3 -64.63 -127.64 REMARK 500 2 THR A 4 80.36 -161.04 REMARK 500 2 THR A 10 143.47 -170.62 REMARK 500 2 GLU A 31 4.80 -154.86 REMARK 500 2 LYS A 41 -68.40 -106.10 REMARK 500 2 LYS A 42 -75.92 -112.96 REMARK 500 2 SER A 63 176.41 61.31 REMARK 500 2 ASP A 65 91.67 55.67 REMARK 500 2 VAL A 67 43.65 -141.18 REMARK 500 2 ASP A 68 71.40 57.52 REMARK 500 2 THR A 79 -158.98 -120.05 REMARK 500 2 LYS A 80 -85.30 -68.84 REMARK 500 2 PRO A 101 92.30 -54.98 REMARK 500 2 MET A 113 -73.25 -105.42 REMARK 500 2 LYS A 133 -89.84 -87.38 REMARK 500 2 ASN A 135 11.95 -164.27 REMARK 500 3 SER A 2 -85.95 60.06 REMARK 500 3 ILE A 3 -65.82 -108.68 REMARK 500 3 THR A 4 80.14 -170.21 REMARK 500 3 GLU A 31 6.18 -152.53 REMARK 500 3 LYS A 41 -64.30 -137.41 REMARK 500 3 LYS A 42 -77.92 -103.99 REMARK 500 3 ASP A 43 78.02 -158.69 REMARK 500 3 ASP A 65 91.34 58.47 REMARK 500 3 VAL A 67 40.51 -105.22 REMARK 500 3 ASP A 68 89.48 59.00 REMARK 500 3 THR A 79 -156.92 -131.16 REMARK 500 3 LYS A 80 -80.18 -84.78 REMARK 500 3 PRO A 101 87.39 -55.64 REMARK 500 3 HIS A 114 -162.72 -103.86 REMARK 500 3 LYS A 133 -83.36 -85.54 REMARK 500 3 ASN A 135 10.93 -148.64 REMARK 500 3 SER A 145 -62.44 73.21 REMARK 500 4 SER A 1 -62.32 -149.83 REMARK 500 4 SER A 2 -169.03 -109.09 REMARK 500 4 ILE A 3 -71.05 -83.21 REMARK 500 4 THR A 4 80.62 -153.63 REMARK 500 4 GLU A 31 5.62 -162.31 REMARK 500 4 ASN A 61 35.72 -92.23 REMARK 500 REMARK 500 THIS ENTRY HAS 150 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16317 RELATED DB: BMRB DBREF 2KLL A 1 160 UNP O95760 IL33_HUMAN 111 270 SEQADV 2KLL GLY A 0 UNP O95760 EXPRESSION TAG SEQRES 1 A 161 GLY SER SER ILE THR GLY ILE SER PRO ILE THR GLU TYR SEQRES 2 A 161 LEU ALA SER LEU SER THR TYR ASN ASP GLN SER ILE THR SEQRES 3 A 161 PHE ALA LEU GLU ASP GLU SER TYR GLU ILE TYR VAL GLU SEQRES 4 A 161 ASP LEU LYS LYS ASP GLU LYS LYS ASP LYS VAL LEU LEU SEQRES 5 A 161 SER TYR TYR GLU SER GLN HIS PRO SER ASN GLU SER GLY SEQRES 6 A 161 ASP GLY VAL ASP GLY LYS MET LEU MET VAL THR LEU SER SEQRES 7 A 161 PRO THR LYS ASP PHE TRP LEU HIS ALA ASN ASN LYS GLU SEQRES 8 A 161 HIS SER VAL GLU LEU HIS LYS CYS GLU LYS PRO LEU PRO SEQRES 9 A 161 ASP GLN ALA PHE PHE VAL LEU HIS ASN MET HIS SER ASN SEQRES 10 A 161 CYS VAL SER PHE GLU CYS LYS THR ASP PRO GLY VAL PHE SEQRES 11 A 161 ILE GLY VAL LYS ASP ASN HIS LEU ALA LEU ILE LYS VAL SEQRES 12 A 161 ASP SER SER GLU ASN LEU CYS THR GLU ASN ILE LEU PHE SEQRES 13 A 161 LYS LEU SER GLU THR HELIX 1 1 ASP A 104 ALA A 106 1 3 HELIX 2 2 GLU A 151 ILE A 153 5 3 SHEET 1 A 9 TYR A 33 ASP A 39 0 SHEET 2 A 9 GLN A 22 LEU A 28 -1 N SER A 23 O GLU A 38 SHEET 3 A 9 PRO A 8 THR A 18 -1 N LEU A 16 O ILE A 24 SHEET 4 A 9 PHE A 155 SER A 158 -1 O LYS A 156 N SER A 17 SHEET 5 A 9 VAL A 118 CYS A 122 -1 N VAL A 118 O PHE A 155 SHEET 6 A 9 PHE A 108 ASN A 112 -1 N HIS A 111 O SER A 119 SHEET 7 A 9 LEU A 72 SER A 77 -1 N VAL A 74 O PHE A 108 SHEET 8 A 9 VAL A 49 GLU A 55 -1 N TYR A 54 O MET A 73 SHEET 9 A 9 PRO A 8 THR A 18 -1 N ILE A 9 O TYR A 53 SHEET 1 B 2 PHE A 82 ASN A 87 0 SHEET 2 B 2 SER A 92 LYS A 97 -1 O HIS A 96 N TRP A 83 SHEET 1 C 2 VAL A 128 VAL A 132 0 SHEET 2 C 2 LEU A 137 LYS A 141 -1 O ILE A 140 N PHE A 129 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000