PDB Short entry for 2KLQ HEADER REPLICATION 08-JUL-09 2KLQ TITLE THE SOLUTION STRUCTURE OF CBD OF HUMAN MCM6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPLICATION LICENSING FACTOR MCM6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 708-821; COMPND 5 SYNONYM: CBD, P105MCM; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS DNA REPLICATION, PRE-RC, MCM6, CDT1, CBD STRUCTURE, ATP-BINDING, CELL KEYWDS 2 CYCLE, DNA-BINDING, NUCLEOTIDE-BINDING, NUCLEUS, PHOSPHOPROTEIN, KEYWDS 3 POLYMORPHISM, TRANSCRIPTION, TRANSCRIPTION REGULATION, REPLICATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.LIU REVDAT 3 16-MAR-22 2KLQ 1 REMARK SEQADV REVDAT 2 02-JUN-10 2KLQ 1 JRNL REVDAT 1 02-MAR-10 2KLQ 0 JRNL AUTH Z.WEI,C.LIU,X.WU,N.XU,B.ZHOU,C.LIANG,G.ZHU JRNL TITL CHARACTERIZATION AND STRUCTURE DETERMINATION OF THE CDT1 JRNL TITL 2 BINDING DOMAIN OF HUMAN MINICHROMOSOME MAINTENANCE (MCM) 6 JRNL REF J.BIOL.CHEM. V. 285 12469 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20202939 JRNL DOI 10.1074/JBC.C109.094599 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECALCULATED IN CNS,WATER REFINEMENT REMARK 4 REMARK 4 2KLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101277. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 CBD,MES,EDTA,GLYCEROL,NACL-1, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] CBD,MES,EDTA, REMARK 210 GLYCEROL,NACL-2, 100% D2O; 0.5 REMARK 210 MM CBD,MES,EDTA,GLYCEROL,NACL-3, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : QUALITY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 779 OD2 ASP A 784 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 712 85.21 63.99 REMARK 500 1 ARG A 714 93.39 -61.92 REMARK 500 1 LEU A 715 -44.24 171.24 REMARK 500 1 GLU A 738 -74.31 -125.88 REMARK 500 1 ASP A 739 -86.80 -148.87 REMARK 500 1 GLU A 740 60.69 -166.41 REMARK 500 1 SER A 741 -69.77 68.00 REMARK 500 1 ALA A 742 -162.03 37.13 REMARK 500 1 LEU A 743 -159.41 68.84 REMARK 500 1 LEU A 790 -71.93 -108.64 REMARK 500 1 THR A 791 -93.25 -75.85 REMARK 500 1 GLN A 792 -31.96 177.42 REMARK 500 1 TYR A 810 -107.46 68.32 REMARK 500 2 LEU A 713 90.09 58.85 REMARK 500 2 SER A 802 110.91 67.53 REMARK 500 2 PRO A 809 178.78 -59.10 REMARK 500 2 TYR A 817 -177.93 64.70 REMARK 500 3 ALA A 711 92.75 71.33 REMARK 500 3 ARG A 714 -37.60 -177.62 REMARK 500 3 LEU A 715 -79.60 -107.17 REMARK 500 3 PHE A 717 21.06 -151.82 REMARK 500 3 ASP A 739 -52.89 71.50 REMARK 500 3 ALA A 742 107.12 -161.51 REMARK 500 3 LEU A 790 -90.49 -81.99 REMARK 500 3 LYS A 796 -64.76 -124.57 REMARK 500 3 GLU A 800 -53.16 68.17 REMARK 500 3 GLU A 806 -93.41 -88.85 REMARK 500 3 PRO A 809 -85.77 -46.72 REMARK 500 3 ASN A 816 87.66 66.08 REMARK 500 4 ASP A 739 -38.08 70.06 REMARK 500 4 LEU A 743 -151.93 -108.83 REMARK 500 4 HIS A 782 -75.18 -106.01 REMARK 500 4 ALA A 793 121.69 -175.45 REMARK 500 4 ASN A 816 -41.76 175.64 REMARK 500 4 TYR A 817 -163.87 67.61 REMARK 500 5 LEU A 713 -70.04 64.00 REMARK 500 5 ASP A 739 -50.07 72.09 REMARK 500 5 HIS A 782 -53.97 -135.17 REMARK 500 5 LEU A 795 -70.97 -67.32 REMARK 500 5 GLU A 806 -72.69 -52.29 REMARK 500 5 LEU A 819 -155.64 -95.90 REMARK 500 6 ARG A 714 -47.32 -173.14 REMARK 500 6 PHE A 717 69.83 -109.21 REMARK 500 6 GLU A 738 -73.78 -127.09 REMARK 500 6 ASP A 739 -62.23 171.77 REMARK 500 6 GLU A 740 89.15 -153.25 REMARK 500 6 ALA A 742 107.14 63.24 REMARK 500 6 THR A 799 118.97 79.14 REMARK 500 6 SER A 802 -175.00 64.95 REMARK 500 6 ASN A 816 -77.37 -61.05 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 745 0.09 SIDE CHAIN REMARK 500 4 ARG A 722 0.07 SIDE CHAIN REMARK 500 14 ARG A 722 0.08 SIDE CHAIN REMARK 500 18 ARG A 722 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2KLQ A 708 821 UNP Q14566 MCM6_HUMAN 708 821 SEQADV 2KLQ SER A 721 UNP Q14566 CYS 721 ENGINEERED MUTATION SEQRES 1 A 114 ALA PRO LYS ALA SER LEU ARG LEU GLY PHE SER GLU TYR SEQRES 2 A 114 SER ARG ILE SER ASN LEU ILE VAL LEU HIS LEU ARG LYS SEQRES 3 A 114 VAL GLU GLU GLU GLU ASP GLU SER ALA LEU LYS ARG SER SEQRES 4 A 114 GLU LEU VAL ASN TRP TYR LEU LYS GLU ILE GLU SER GLU SEQRES 5 A 114 ILE ASP SER GLU GLU GLU LEU ILE ASN LYS LYS ARG ILE SEQRES 6 A 114 ILE GLU LYS VAL ILE HIS ARG LEU THR HIS TYR ASP HIS SEQRES 7 A 114 VAL LEU ILE GLU LEU THR GLN ALA GLY LEU LYS GLY SER SEQRES 8 A 114 THR GLU GLY SER GLU SER TYR GLU GLU ASP PRO TYR LEU SEQRES 9 A 114 VAL VAL ASN PRO ASN TYR LEU LEU GLU ASP HELIX 1 1 PHE A 717 GLU A 738 1 22 HELIX 2 2 LYS A 744 GLU A 757 1 14 HELIX 3 3 SER A 762 TYR A 783 1 22 HELIX 4 4 GLN A 792 GLY A 797 1 6 SHEET 1 A 2 LEU A 787 ILE A 788 0 SHEET 2 A 2 VAL A 812 VAL A 813 -1 O VAL A 812 N ILE A 788 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000