PDB Short entry for 2KLZ HEADER HYDROLASE 12-JUL-09 2KLZ TITLE SOLUTION STRUCTURE OF THE TANDEM UIM DOMAIN OF ATAXIN-3 COMPLEXED WITH TITLE 2 UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATAXIN-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UIM1 AND UIM 2 DOMAIN, UNP RESIDUES 222-263; COMPND 5 SYNONYM: MACHADO-JOSEPH DISEASE PROTEIN 1, SPINOCEREBELLAR ATAXIA COMPND 6 TYPE 3 PROTEIN; COMPND 7 EC: 3.4.22.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGBTNH KEYWDS UIM, ATAXIN-3, UBIQUITIN-BINDING, HYDROLASE, NEURODEGENERATION, KEYWDS 2 NUCLEUS, PHOSPHOPROTEIN, SPINOCEREBELLAR ATAXIA, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.ZHOU,A.SONG,D.LIN,H.HU REVDAT 3 14-JUN-23 2KLZ 1 REMARK REVDAT 2 26-FEB-20 2KLZ 1 REMARK SEQADV REVDAT 1 28-JUL-10 2KLZ 0 JRNL AUTH A.SONG,C.ZHOU,H.GAO,Z.ZHOU,Q.FU,J.HONG,D.LIN,H.HU JRNL TITL SOLUTION STRUCTURE OF THE TANDEM UIM DOMAIN OF ATAXIN-3 JRNL TITL 2 COMPLEXED WITH UBIQUITIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), LINGE, O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000101286. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 15N] PROTEIN-1, 20 REMARK 210 MM SODIUM PHOSPHATE-2, 100 MM REMARK 210 SODIUM CHLORIDE-3, 0.02 % SODIUM REMARK 210 AZIDE-4, 4 MM UBIQUITIN-5, 90% REMARK 210 H2O/10% D2O; 1 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN-6, 20 MM REMARK 210 SODIUM PHOSPHATE-7, 100 MM REMARK 210 SODIUM CHLORIDE-8, 0.02 % SODIUM REMARK 210 AZIDE-9, 4 MM UBIQUITIN-10, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D H(CCO)NH; 3D C(CO) REMARK 210 NH; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, ARIA, PROCHECKNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 HIS A 52 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 21 -75.56 -79.68 REMARK 500 1 ASP A 22 60.61 36.67 REMARK 500 1 GLU A 24 58.60 -91.84 REMARK 500 1 ASP A 25 -101.30 -138.89 REMARK 500 1 SER A 42 -149.82 -103.49 REMARK 500 2 SER A 2 -42.87 -147.32 REMARK 500 2 ASP A 25 -136.82 -139.62 REMARK 500 2 SER A 41 35.68 -88.88 REMARK 500 2 ASN A 44 -66.96 -167.91 REMARK 500 2 LEU A 45 -54.17 -166.96 REMARK 500 3 LEU A 3 -64.17 -106.82 REMARK 500 3 ILE A 21 79.58 55.08 REMARK 500 3 GLU A 24 -82.34 -173.13 REMARK 500 3 ASP A 25 -76.50 -140.14 REMARK 500 3 ASN A 44 72.97 58.36 REMARK 500 4 ILE A 21 -70.32 -74.92 REMARK 500 4 ASP A 22 -40.63 68.56 REMARK 500 4 MET A 23 108.40 -54.91 REMARK 500 4 GLU A 24 45.49 -87.86 REMARK 500 4 ASP A 25 -114.80 -109.77 REMARK 500 4 ASN A 44 12.61 -150.80 REMARK 500 4 LEU A 45 71.56 -101.30 REMARK 500 5 SER A 2 -86.93 -157.46 REMARK 500 5 LEU A 3 -96.93 -117.96 REMARK 500 5 ASP A 4 -50.58 -149.79 REMARK 500 5 ILE A 21 -78.22 -117.97 REMARK 500 5 ASP A 22 88.06 54.02 REMARK 500 5 ASP A 25 -165.64 -116.58 REMARK 500 5 ARG A 43 21.51 -147.60 REMARK 500 5 ASN A 44 -69.71 -148.99 REMARK 500 6 LEU A 3 -95.03 59.93 REMARK 500 6 ASP A 22 47.83 -108.44 REMARK 500 6 GLU A 24 58.40 -116.42 REMARK 500 6 ASP A 25 -148.56 -103.73 REMARK 500 6 ASN A 44 59.93 -104.27 REMARK 500 7 LEU A 3 -3.52 -148.84 REMARK 500 7 MET A 23 86.88 36.15 REMARK 500 7 ASP A 25 -68.90 -132.84 REMARK 500 7 ASN A 44 59.94 -114.93 REMARK 500 8 ASP A 22 52.66 -108.33 REMARK 500 8 GLU A 26 -18.42 71.22 REMARK 500 8 ASN A 44 -49.44 -167.37 REMARK 500 8 LEU A 45 92.37 70.26 REMARK 500 9 ILE A 21 -77.45 -88.53 REMARK 500 9 ASP A 25 -97.95 -96.90 REMARK 500 9 ARG A 43 -71.84 -59.48 REMARK 500 9 ASN A 44 44.07 -105.51 REMARK 500 10 ILE A 21 -82.34 -78.01 REMARK 500 10 ASP A 22 55.57 37.71 REMARK 500 10 GLU A 26 -18.75 72.71 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16405 RELATED DB: BMRB DBREF 2KLZ A 3 44 UNP P54252 ATX3_HUMAN 222 263 SEQADV 2KLZ GLY A 1 UNP P54252 EXPRESSION TAG SEQADV 2KLZ SER A 2 UNP P54252 EXPRESSION TAG SEQADV 2KLZ LEU A 45 UNP P54252 EXPRESSION TAG SEQADV 2KLZ GLU A 46 UNP P54252 EXPRESSION TAG SEQADV 2KLZ HIS A 47 UNP P54252 EXPRESSION TAG SEQADV 2KLZ HIS A 48 UNP P54252 EXPRESSION TAG SEQADV 2KLZ HIS A 49 UNP P54252 EXPRESSION TAG SEQADV 2KLZ HIS A 50 UNP P54252 EXPRESSION TAG SEQADV 2KLZ HIS A 51 UNP P54252 EXPRESSION TAG SEQADV 2KLZ HIS A 52 UNP P54252 EXPRESSION TAG SEQRES 1 A 52 GLY SER LEU ASP GLU ASP GLU GLU ASP LEU GLN ARG ALA SEQRES 2 A 52 LEU ALA LEU SER ARG GLN GLU ILE ASP MET GLU ASP GLU SEQRES 3 A 52 GLU ALA ASP LEU ARG ARG ALA ILE GLN LEU SER MET GLN SEQRES 4 A 52 GLY SER SER ARG ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 2 ASP A 22 1 21 HELIX 2 2 GLU A 26 GLN A 39 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000