PDB Short entry for 2KMZ HEADER APOPTOSIS 10-AUG-09 2KMZ TITLE NMR STRUCTURE OF HFN14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 12A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CRD, RESIDUES 28-80; COMPND 5 SYNONYM: FIBROBLAST GROWTH FACTOR-INDUCIBLE IMMEDIATE-EARLY RESPONSE COMPND 6 PROTEIN 14, FGF-INDUCIBLE 14, TWEAK-RECEPTOR, TWEAKR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FN14, TNFRSF12A; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS FN14, TWEAK, TNF RECEPTOR, CRD, TNFRSF12A, ANGIOGENESIS, APOPTOSIS, KEYWDS 2 CELL ADHESION, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, DISULFIDE KEYWDS 3 BOND, MEMBRANE, RECEPTOR, TRANSMEMBRANE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH,H.CUERVO, AUTHOR 2 Y.SUN,E.S.DAY,P.SCHNEIDER,T.S.ZHENG REVDAT 3 01-MAY-13 2KMZ 1 JRNL REVDAT 2 10-APR-13 2KMZ 1 JRNL VERSN REVDAT 1 29-JUN-11 2KMZ 0 JRNL AUTH M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH, JRNL AUTH 2 H.CUERVO,E.S.DAY,P.SCHNEIDER,T.S.ZHENG JRNL TITL STRUCTURE OF THE EXTRACELLULAR DOMAINS OF HUMAN AND XENOPUS JRNL TITL 2 FN14: IMPLICATIONS IN THE EVOLUTION OF TWEAK AND FN14 JRNL TITL 3 INTERACTIONS. JRNL REF FEBS J. V. 280 1818 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23438059 JRNL DOI 10.1111/FEBS.12206 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB101321. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 140 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 700 UM [U-99% 15N] HFN14-1, 10 REMARK 210 MM SODIUM PHOSPHATE-2, 137 MM REMARK 210 SODIUM CHLORIDE-3, 2.7 MM REMARK 210 POTASSIUM CHLORIDE-4, 95% H2O, 5% REMARK 210 D2O; 700 UM HFN14-5, 10 MM SODIUM REMARK 210 PHOSPHATE-6, 137 MM SODIUM REMARK 210 CHLORIDE-7, 2.7 MM POTASSIUM REMARK 210 CHLORIDE-8, 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, SPARKY 3.11 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 LOWEST ENERGY STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 4 77.23 -61.95 REMARK 500 1 THR A 6 104.04 44.36 REMARK 500 1 CYS A 9 96.31 52.17 REMARK 500 1 ARG A 11 91.32 59.16 REMARK 500 1 SER A 13 -171.89 48.13 REMARK 500 1 LEU A 19 21.40 -141.23 REMARK 500 1 ASP A 20 80.67 42.25 REMARK 500 1 LYS A 21 141.92 -172.58 REMARK 500 1 SER A 27 34.98 -175.88 REMARK 500 1 CYS A 28 44.96 -164.91 REMARK 500 1 ALA A 30 -37.00 178.88 REMARK 500 1 HIS A 33 61.41 -157.99 REMARK 500 1 SER A 34 146.14 -174.06 REMARK 500 1 ALA A 41 -173.27 -65.61 REMARK 500 1 ALA A 43 95.29 48.66 REMARK 500 1 PRO A 47 -167.46 -55.69 REMARK 500 1 ARG A 49 -63.72 -143.07 REMARK 500 2 ALA A 3 -62.35 -177.04 REMARK 500 2 THR A 6 38.49 -96.93 REMARK 500 2 ALA A 7 106.84 -166.08 REMARK 500 2 PRO A 8 63.41 -68.81 REMARK 500 2 CYS A 9 71.73 57.45 REMARK 500 2 LEU A 19 21.79 -149.87 REMARK 500 2 ASP A 20 77.81 43.26 REMARK 500 2 LYS A 21 135.42 -177.76 REMARK 500 2 SER A 27 37.11 179.49 REMARK 500 2 CYS A 28 41.35 -160.91 REMARK 500 2 ALA A 30 -33.87 -178.82 REMARK 500 2 HIS A 33 61.46 67.20 REMARK 500 2 ALA A 41 86.64 -165.51 REMARK 500 2 PRO A 44 176.63 -51.76 REMARK 500 2 PHE A 48 -167.28 60.04 REMARK 500 2 ARG A 49 131.83 65.36 REMARK 500 2 LEU A 50 66.07 60.86 REMARK 500 2 TRP A 52 -64.57 -92.34 REMARK 500 3 GLN A 2 -71.92 67.58 REMARK 500 3 ALA A 3 75.18 55.51 REMARK 500 3 SER A 10 28.46 -149.09 REMARK 500 3 ARG A 11 31.22 -163.66 REMARK 500 3 LEU A 19 20.23 -146.70 REMARK 500 3 ASP A 20 80.22 42.33 REMARK 500 3 LYS A 21 142.22 172.36 REMARK 500 3 SER A 27 64.89 -69.82 REMARK 500 3 CYS A 28 39.22 -164.34 REMARK 500 3 HIS A 33 63.75 -162.04 REMARK 500 3 ALA A 41 105.65 56.93 REMARK 500 3 ALA A 42 172.69 60.96 REMARK 500 3 PRO A 45 179.75 -53.04 REMARK 500 3 TRP A 52 79.10 -156.26 REMARK 500 4 ARG A 11 106.96 60.75 REMARK 500 REMARK 500 THIS ENTRY HAS 271 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KMZ A 1 53 UNP Q9NP84 TNR12_HUMAN 28 80 SEQRES 1 A 53 GLU GLN ALA PRO GLY THR ALA PRO CYS SER ARG GLY SER SEQRES 2 A 53 SER TRP SER ALA ASP LEU ASP LYS CYS MET ASP CYS ALA SEQRES 3 A 53 SER CYS ARG ALA ARG PRO HIS SER ASP PHE CYS LEU GLY SEQRES 4 A 53 CYS ALA ALA ALA PRO PRO ALA PRO PHE ARG LEU LEU TRP SEQRES 5 A 53 PRO HELIX 1 1 SER A 34 ALA A 41 1 8 SSBOND 1 CYS A 9 CYS A 22 1555 1555 2.03 SSBOND 2 CYS A 25 CYS A 40 1555 1555 2.03 SSBOND 3 CYS A 28 CYS A 37 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000