PDB Short entry for 2KN1 HEADER SIGNALING PROTEIN 11-AUG-09 2KN1 TITLE SOLUTION NMR STRUCTURE OF BCMA CAVEAT 2KN1 IN MODEL 11, RESIDUE A LYS 49 AND RESIDUE A CY1 50 ARE NOT CAVEAT 2 2KN1 PROPERLY LINKED, WITH A C-N BOND DISTANCE OF 6.76 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 17; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-50; COMPND 5 SYNONYM: B-CELL MATURATION PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: SOLID PHASE PEPTIDE SYNTHESIS KEYWDS BCMA, BAFF, TNF RECEPTOR, CRD, APRIL, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH,H.CUERVO, AUTHOR 2 Y.SUN,E.S.DAY,P.SCHNEIDER,T.S.ZHENG REVDAT 3 01-MAY-13 2KN1 1 JRNL REVDAT 2 10-APR-13 2KN1 1 JRNL VERSN REVDAT 1 23-FEB-11 2KN1 0 JRNL AUTH M.PELLEGRINI,L.WILLEN,M.PERROUD,D.KRUSHINSKIE,K.STRAUCH, JRNL AUTH 2 H.CUERVO,E.S.DAY,P.SCHNEIDER,T.S.ZHENG JRNL TITL STRUCTURE OF THE EXTRACELLULAR DOMAINS OF HUMAN AND XENOPUS JRNL TITL 2 FN14: IMPLICATIONS IN THE EVOLUTION OF TWEAK AND FN14 JRNL TITL 3 INTERACTIONS. JRNL REF FEBS J. V. 280 1818 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23438059 JRNL DOI 10.1111/FEBS.12206 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KN1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB101323. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298-318 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 900 UM BCMA, 10 MM SODIUM REMARK 210 PHOSPHATE, 0.02 % SODIUM AZIDE, REMARK 210 95% H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1, SPARKY 3.11 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 LOWEST ENERGY STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H TYR A 12 O ILE A 21 1.54 REMARK 500 O ASP A 14 H HIS A 18 1.56 REMARK 500 O CYS A 36 H CYS A 40 1.59 REMARK 500 O TYR A 12 H ILE A 21 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 3 -2.14 75.76 REMARK 500 1 ALA A 4 73.09 -64.89 REMARK 500 1 GLN A 6 72.67 168.46 REMARK 500 1 ASN A 30 -14.91 76.26 REMARK 500 1 THR A 31 53.35 30.30 REMARK 500 1 THR A 45 146.32 -29.43 REMARK 500 1 SER A 47 146.71 67.78 REMARK 500 1 VAL A 48 93.77 50.67 REMARK 500 1 LYS A 49 158.30 65.08 REMARK 500 2 GLN A 2 139.31 63.71 REMARK 500 2 MET A 3 -7.99 78.50 REMARK 500 2 GLN A 6 73.72 165.28 REMARK 500 2 THR A 31 67.16 11.79 REMARK 500 2 PRO A 32 92.19 -33.48 REMARK 500 2 VAL A 44 55.65 -142.71 REMARK 500 2 THR A 45 171.78 53.37 REMARK 500 2 SER A 47 147.69 62.79 REMARK 500 2 VAL A 48 100.38 168.17 REMARK 500 2 LYS A 49 92.87 56.69 REMARK 500 3 MET A 3 -5.50 77.42 REMARK 500 3 GLN A 6 70.79 176.50 REMARK 500 3 CYS A 23 -21.66 -145.03 REMARK 500 3 THR A 31 75.14 0.32 REMARK 500 3 PRO A 32 94.97 -38.30 REMARK 500 3 VAL A 44 58.01 -141.53 REMARK 500 3 THR A 45 -44.56 82.68 REMARK 500 3 ASN A 46 -164.74 49.29 REMARK 500 3 SER A 47 94.13 74.47 REMARK 500 3 VAL A 48 99.15 168.37 REMARK 500 3 LYS A 49 -167.96 165.31 REMARK 500 4 MET A 3 -6.43 78.93 REMARK 500 4 GLN A 6 71.08 176.36 REMARK 500 4 PRO A 22 167.16 -45.64 REMARK 500 4 CYS A 23 -20.31 -143.01 REMARK 500 4 CYS A 27 -101.23 -34.15 REMARK 500 4 ASN A 30 27.19 47.37 REMARK 500 4 THR A 31 84.13 -176.16 REMARK 500 4 PRO A 32 109.65 -49.84 REMARK 500 4 SER A 43 -37.21 -130.81 REMARK 500 4 THR A 45 -50.18 68.32 REMARK 500 4 ASN A 46 -176.04 50.88 REMARK 500 4 SER A 47 131.54 70.13 REMARK 500 4 VAL A 48 93.51 50.65 REMARK 500 4 LYS A 49 -172.30 55.36 REMARK 500 5 MET A 3 -50.75 159.00 REMARK 500 5 ALA A 4 82.39 -12.07 REMARK 500 5 GLN A 6 70.38 178.48 REMARK 500 5 CYS A 27 -84.57 38.49 REMARK 500 5 SER A 28 55.76 -143.81 REMARK 500 5 THR A 31 77.94 -170.60 REMARK 500 REMARK 500 THIS ENTRY HAS 255 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KMZ RELATED DB: PDB REMARK 900 HUMAN FN14 SOLUTION NMR STRUCTURE REMARK 900 RELATED ID: 2KN0 RELATED DB: PDB REMARK 900 XENOPUS FN14 SOLUTION NMR STRUCTURE DBREF 2KN1 A 1 49 UNP Q02223 TNR17_HUMAN 2 50 SEQADV 2KN1 CY1 A 50 UNP Q02223 INSERTION SEQADV 2KN1 NH2 A 51 UNP Q02223 INSERTION SEQRES 1 A 51 LEU GLN MET ALA GLY GLN CYS SER GLN ASN GLU TYR PHE SEQRES 2 A 51 ASP SER LEU LEU HIS ALA CYS ILE PRO CYS GLN LEU ARG SEQRES 3 A 51 CYS SER SER ASN THR PRO PRO LEU THR CYS GLN ARG TYR SEQRES 4 A 51 CYS ASN ALA SER VAL THR ASN SER VAL LYS CY1 NH2 MODRES 2KN1 CY1 A 50 CYS ACETAMIDOMETHYLCYSTEINE HET CY1 A 50 21 HET NH2 A 51 3 HETNAM CY1 ACETAMIDOMETHYLCYSTEINE HETNAM NH2 AMINO GROUP FORMUL 1 CY1 C6 H12 N2 O3 S FORMUL 1 NH2 H2 N HELIX 1 1 CYS A 23 SER A 28 1 6 HELIX 2 2 CYS A 36 ASN A 41 1 6 SHEET 1 A 2 GLU A 11 PHE A 13 0 SHEET 2 A 2 CYS A 20 PRO A 22 -1 O ILE A 21 N TYR A 12 SSBOND 1 CYS A 7 CYS A 20 1555 1555 2.03 SSBOND 2 CYS A 23 CYS A 36 1555 1555 2.03 SSBOND 3 CYS A 27 CYS A 40 1555 1555 2.03 LINK C LYS A 49 N CY1 A 50 1555 1555 1.33 LINK C CY1 A 50 N NH2 A 51 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000