PDB Short entry for 2KN6 HEADER APOPTOSIS 16-AUG-09 2KN6 TITLE STRUCTURE OF FULL-LENGTH HUMAN ASC (APOPTOSIS-ASSOCIATED SPECK-LIKE TITLE 2 PROTEIN CONTAINING A CARD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOPTOSIS-ASSOCIATED SPECK-LIKE PROTEIN CONTAINING A CARD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HASC, PYD AND CARD DOMAIN-CONTAINING PROTEIN, TARGET OF COMPND 5 METHYLATION-INDUCED SILENCING 1, CASPASE RECRUITMENT DOMAIN- COMPND 6 CONTAINING PROTEIN 5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASC, CARD5, PYCARD, TMS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS MULTIDOMAIN MODULAR PROTEIN STRUCTURE, INTERDOMAIN MOBILITY, DEATH KEYWDS 2 DOMAIN, APOPTOSIS, INFLAMMATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.DE ALBA REVDAT 3 16-NOV-11 2KN6 1 JRNL VERSN REVDAT 2 29-SEP-09 2KN6 1 JRNL REVDAT 1 15-SEP-09 2KN6 0 JRNL AUTH E.DE ALBA JRNL TITL STRUCTURE AND INTERDOMAIN DYNAMICS OF APOPTOSIS-ASSOCIATED JRNL TITL 2 SPECK-LIKE PROTEIN CONTAINING A CARD (ASC) JRNL REF J.BIOL.CHEM. V. 284 32932 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19759015 JRNL DOI 10.1074/JBC.M109.024273 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.DE ALBA REMARK 1 TITL 1H, 15N AND 13C BACKBONE AND SIDE CHAIN CHEMICAL SHIFTS OF REMARK 1 TITL 2 HUMAN ASC (APOPTOSIS-ASSOCIATED SPECK-LIKE PROTEIN REMARK 1 TITL 3 CONTAINING A CARD DOMAIN) REMARK 1 REF BIOMOL.NMR ASSIGN. V. 1 135 2007 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 19636848 REMARK 1 DOI 10.1007/S12104-007-9036-X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB101328. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.8 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2MM [U-100% 13C; U-100% 15N] REMARK 210 APOPTOSIS-ASSOCIATED SPECK-LIKE REMARK 210 PROTEIN CONTAINING A CARD-1, REMARK 210 0.1MM SODIUM AZIDE-2, 5MM [U-2H] REMARK 210 TCEP-3, 95% H2O/5% D2O; 0.2MM [U- REMARK 210 15N] APOPTOSIS-ASSOCIATED SPECK- REMARK 210 LIKE PROTEIN CONTAINING A CARD-4, REMARK 210 0.1MM SODIUM AZIDE-5, 5MM TCEP-6, REMARK 210 95% H2O/5% D2O; 0.2MM [U-13C; U- REMARK 210 15N] APOPTOSIS-ASSOCIATED SPECK- REMARK 210 LIKE PROTEIN CONTAINING A CARD-7, REMARK 210 0.1MM SODIUM AZIDE-8, 5MM [U-2H] REMARK 210 TCEP-9, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D HBHA(CO)NH; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 4D HCHC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XWINNMR, PROCHECKNMR, REMARK 210 TOPSPIN, PIPP, SPARKY, TALOS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER WITH CRYOPROBE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 16 H GLU A 19 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 33 -96.75 -62.63 REMARK 500 1 GLU A 34 -76.11 -62.69 REMARK 500 1 TYR A 36 -83.46 31.48 REMARK 500 1 LEU A 61 164.42 64.01 REMARK 500 1 LEU A 78 57.24 -90.55 REMARK 500 1 HIS A 90 89.24 -169.90 REMARK 500 1 SER A 93 -179.11 -69.88 REMARK 500 1 GLN A 101 -177.55 50.05 REMARK 500 1 PHE A 114 -54.79 -170.11 REMARK 500 1 THR A 127 -72.50 61.96 REMARK 500 1 ASN A 128 82.03 -67.54 REMARK 500 1 LYS A 139 -88.43 -82.80 REMARK 500 1 PHE A 165 38.08 -76.72 REMARK 500 1 GLN A 185 114.59 -173.81 REMARK 500 2 ARG A 33 -92.51 -67.17 REMARK 500 2 LEU A 61 162.78 62.73 REMARK 500 2 HIS A 90 83.38 -157.92 REMARK 500 2 PRO A 97 -4.71 -57.18 REMARK 500 2 PHE A 114 -55.26 -168.74 REMARK 500 2 THR A 127 -70.92 60.10 REMARK 500 2 ASN A 128 78.13 -63.71 REMARK 500 2 LYS A 139 -85.76 -116.87 REMARK 500 2 PHE A 165 38.99 -80.39 REMARK 500 2 GLN A 185 104.51 -172.71 REMARK 500 3 ARG A 33 -112.11 -68.83 REMARK 500 3 TYR A 36 -136.32 -134.94 REMARK 500 3 LEU A 61 170.75 61.74 REMARK 500 3 HIS A 90 71.37 41.20 REMARK 500 3 SER A 93 88.56 -69.32 REMARK 500 3 ALA A 98 122.36 58.65 REMARK 500 3 ILE A 100 79.69 -66.30 REMARK 500 3 GLN A 101 -6.51 -168.18 REMARK 500 3 THR A 127 -69.73 62.15 REMARK 500 3 ASN A 128 77.61 -62.91 REMARK 500 3 LYS A 139 -98.01 -112.74 REMARK 500 3 PHE A 165 33.49 -97.21 REMARK 500 3 GLN A 185 116.19 -172.80 REMARK 500 3 ARG A 194 43.94 -71.41 REMARK 500 4 LEU A 61 158.04 60.40 REMARK 500 4 HIS A 90 82.60 -159.09 REMARK 500 4 GLN A 91 -88.24 -55.19 REMARK 500 4 PRO A 97 37.84 -67.68 REMARK 500 4 ILE A 100 81.21 -62.98 REMARK 500 4 GLN A 101 -98.86 -131.42 REMARK 500 4 GLN A 105 22.36 -71.91 REMARK 500 4 PHE A 114 -53.74 -169.55 REMARK 500 4 THR A 127 -83.86 54.22 REMARK 500 4 ASN A 128 74.39 -66.28 REMARK 500 4 LYS A 139 -80.22 -76.92 REMARK 500 4 PHE A 165 37.28 -77.20 REMARK 500 REMARK 500 THIS ENTRY HAS 272 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KN6 A 1 195 UNP Q9ULZ3 ASC_HUMAN 1 195 SEQADV 2KN6 MET A -19 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 GLY A -18 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 SER A -17 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 SER A -16 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 HIS A -15 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 HIS A -14 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 HIS A -13 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 HIS A -12 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 HIS A -11 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 HIS A -10 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 SER A -9 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 SER A -8 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 GLY A -7 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 LEU A -6 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 VAL A -5 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 PRO A -4 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 ARG A -3 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 GLY A -2 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 SER A -1 UNP Q9ULZ3 EXPRESSION TAG SEQADV 2KN6 HIS A 0 UNP Q9ULZ3 EXPRESSION TAG SEQRES 1 A 215 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 215 LEU VAL PRO ARG GLY SER HIS MET GLY ARG ALA ARG ASP SEQRES 3 A 215 ALA ILE LEU ASP ALA LEU GLU ASN LEU THR ALA GLU GLU SEQRES 4 A 215 LEU LYS LYS PHE LYS LEU LYS LEU LEU SER VAL PRO LEU SEQRES 5 A 215 ARG GLU GLY TYR GLY ARG ILE PRO ARG GLY ALA LEU LEU SEQRES 6 A 215 SER MET ASP ALA LEU ASP LEU THR ASP LYS LEU VAL SER SEQRES 7 A 215 PHE TYR LEU GLU THR TYR GLY ALA GLU LEU THR ALA ASN SEQRES 8 A 215 VAL LEU ARG ASP MET GLY LEU GLN GLU MET ALA GLY GLN SEQRES 9 A 215 LEU GLN ALA ALA THR HIS GLN GLY SER GLY ALA ALA PRO SEQRES 10 A 215 ALA GLY ILE GLN ALA PRO PRO GLN SER ALA ALA LYS PRO SEQRES 11 A 215 GLY LEU HIS PHE ILE ASP GLN HIS ARG ALA ALA LEU ILE SEQRES 12 A 215 ALA ARG VAL THR ASN VAL GLU TRP LEU LEU ASP ALA LEU SEQRES 13 A 215 TYR GLY LYS VAL LEU THR ASP GLU GLN TYR GLN ALA VAL SEQRES 14 A 215 ARG ALA GLU PRO THR ASN PRO SER LYS MET ARG LYS LEU SEQRES 15 A 215 PHE SER PHE THR PRO ALA TRP ASN TRP THR CYS LYS ASP SEQRES 16 A 215 LEU LEU LEU GLN ALA LEU ARG GLU SER GLN SER TYR LEU SEQRES 17 A 215 VAL GLU ASP LEU GLU ARG SER HELIX 1 1 GLY A 2 LEU A 15 1 14 HELIX 2 2 THR A 16 VAL A 30 1 15 HELIX 3 3 PRO A 40 MET A 47 1 8 HELIX 4 4 ASP A 48 TYR A 60 1 13 HELIX 5 5 LEU A 61 GLY A 77 1 17 HELIX 6 6 LEU A 78 HIS A 90 1 13 HELIX 7 7 ASP A 116 THR A 127 1 12 HELIX 8 8 ASN A 128 LEU A 136 1 9 HELIX 9 9 THR A 142 ALA A 151 1 10 HELIX 10 10 THR A 154 PHE A 165 1 12 HELIX 11 11 THR A 166 TRP A 169 5 4 HELIX 12 12 ASN A 170 GLN A 185 1 16 HELIX 13 13 GLN A 185 ARG A 194 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000